4128
S. Ueda et al. / Bioorg. Med. Chem. Lett. 18 (2008) 4124–4129
Figure 3. Ligand binding dose response of the compounds (a) having two guanidino pharmacophores and (b) having a phenol pharmacophore, and (c) the comparison of the
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Figure 4. Overlay of a low-energy structure of (S)-10g (green) and 2 (gray). The
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Acknowledgments
This work was supported by Grant-in-Aid for Scientific Re-
search and Targeted Proteins Research Program from the Ministry
of Education, Culture, Sports, Science, and Technology of Japan, and
Health and Labour Sciences Research Grants (Research on HIV/
AIDS). Computation time was provided by the Supercomputer Lab-
oratory, Institute for Chemical Research, Kyoto University. S.U. and
S.I. are grateful to the JSPS Research Fellowships for Young
Scientists.
References and notes
12. Distances (Å) between b-carbons of
2 during 1000 ps MD calculation; D-
Tyr1–Arg3: 8.0–9.2, -Tyr1–Nal4: 7.9–9.1, Arg3–Nal4: 4.7–5.4, Arg2–Arg3: 4.5–
D
1. Müller, A.; Homey, B.; Soto, H.; Ge, N.; Catron, D.; Buchanan, M. E.; Mcclanahan,
T.; Murphy, E.; Yuan, W.; Wagner, S. M.; Barrera, J. L.; Mohar, A.; Verástegui, E.;
Zlotnik, A. Nature 2001, 410, 50.
5.3, Arg2-Nal4: 7.3–8.4, Arg3–Nal4: 4.7–5.4. Distances (Å) between two key
atoms of energy-minimized 5-acetamido-1-methylindole-2-carboxamide: