Thalidomide Metabolites and Analogues
J ournal of Medicinal Chemistry, 2003, Vol. 46, No. 18 3797
thalidomide 7 as an amorphous white solid. Rf ) ) 0.41
(hexane/ethyl acetate, 1:1). 1H NMR (500 MHz, CDCl3) δ: 7.87
(m, J ) 3.2, 5.5 Hz, 2H), 7.74 (m, J ) 5.2, 5.5 Hz, 2H), 7.31 (d,
J ) 8.6 Hz, 2H), 6.8 (d, J ) 8.6 Hz, 2H), 5.00 (d, J ) 14 Hz,
1H), 4.96 (m, 1H), 4.82 (d, J ) 14 Hz, 1H), 3.76 (s, 3H), 2.96
(m, 1H), 2.76 (m, 2H), 2.08 (m, 1H). 13C NMR (125 MHz,
CDCl3) δ: 170.7, 168.6, 167.4, 159.0, 134.4*, 131.8, 130.4*,
128.9, 123.8*, 113.8*, 55.2*, 50.2*, 43.3, 32.1, 22.0. HRMS m/z
(M+) calcd for C21H18N2O5 378.1216, found 378.1215. IR (KBr)
3-(1-Oxo-1,3-d ih yd r oisoin d ol-2-yl)p ip er id in e-2,6-d i-
on e (1). The N-PMB derivative 10 (66 mg, 0.181 mmol) was
dissolved in acetonitrile (2 mL). Water (400 µL) was added
followed by ceric ammonium nitrate (405 mg, 0.74 mmol). The
bright-orange solution was stirred (2 h) and then quenched
with aqueous sodium bicarbonate (1:1, w/w) and sodium
bisulfite (1:1, w/w) solutions. The volatile components were
removed under vacuum, and the solid residue was suspended
in acetone followed by filtration through a short silica gel (70-
230 mesh) column. Flash-column silica gel was then added to
the solution, the solvent was evaporated, and the silica gel
with the adsorbed compound was applied to a flash-chroma-
tography column and eluted with dichloromethane/acetone (10:
1). Upon elution of all the byproduct 4-methoxybenzaldehyde,
the polarity of the solvent system was increased to 2:1. The
homogeneous fractions were combined to provide 27 mg (61%)
of 1 as a white amorphous solid. Recrystallization of an
analytical sample from methyl cellosolve gave 1 as white
crystals. Mp 237-238 °C. Rf ) 0.22 (dichloromethane/acetone,
1785, 1771, 1726, 1682 cm-1
.
Meth od B. (()-2-Phthalimidoglutaric acid 5 (62 mg, 0.224
mmol) was dissolved in dry acetonitrile (2 mL) and cooled to
0 °C, and triethylamine (78 µL, 0.560 mmol) was added to the
mixture while stirring. To the resultant white suspension was
added 1-hydroxybenzotriazole (123 mg, 0.911 mmol), 4-meth-
oxybenzylamine (35 µL, 0.268 mmol), and 1,3-dicyclohexyl-
carbodiimide (236 mg, 1.14 mmol). The reaction mixture was
allowed to warm to room temperature over 1 h followed by
heating at 50 °C for 15 h. The reaction solvent was removed
under vacuum, and the yellow residue was dissolved in ethyl
acetate and filtered through a short pad of silica gel. Concen-
tration of the filtrate followed by flash-column chromatography
(hexane/ethyl acetate, 2:1) provided 46 mg (54%) of 7 by
trituration of the combined chromatographic fractions with
ethyl acetate. The spectral details were identical to the product
prepared above by method A.
1
5:1). H NMR (500 MHz, methanol-d4) δ: 7.82 (d, J ) 7.3 Hz,
1H), 7.65 (t, J ) 7.3 Hz, 1H), 7.60 (d, J ) 7.3 Hz, 1H), 7.54 (t,
J ) 7.3 Hz, 1H), 5.17 (dd, J ) 5.4 Hz, 13.7, 1H), 4.51 (m, J )
17.0, 27.3 Hz, 2H), 2.92 (ddd, J ) 5.4, 13.7, 18.1 Hz, 1H), 2.79
(ddd, J ) 2.4, 4.4, 13.7 Hz, 1H), 2.51 (ddd, J ) 4.9, 13.2, 26.3
Hz, 1H), 2.08 (m, J ) 2.4, 5.4, 18.1 Hz, 1H). 13C NMR (125
MHz, methanol-d4) δ: 173.5, 171.0, 170.3, 142.5, 132.2*, 131.5,
128.1*, 123.2*, 52.5*, 31.2, 22.9. HRMS m/z (M+) calcd for
1-(4-Met h oxyb en zyl)-3-(1-oxo-1,3-d ih yd r oisoin d ol-2-
yl)p ip er id in e-2,6-d ion e (10). Aluminum amalgam was pre-
pared by rinsing coils of food-grade aluminum foil (68 mg, 2.5
mmol) with diethyl ether. Each coil was immersed in 2%
aqueous mercuric chloride solution while agitating (20 s),
followed by immersing in distilled water (1-2 s) and then
adding to a solution of 7 (1.0 mmol) in THF (5 mL) and distilled
water (250 µL, 13.9 mmol). The reaction mixture was stirred
at room temperature (3 h), during which time evolution of
hydrogen occurred with the formation of a gray suspension.
The reaction mixture was then vacuum-filtered through Celite
while washing with methanol. The clear filtrate was concen-
trated to a syrup under aspirator vacuum followed by further
subjection to high vacuum (12 h) to remove residual water.
The syrupy crude lactam 8 was dissolved in dry dichlo-
romethane (3 mL) followed by addition of thiophenol (190 µL,
2.1 mmol) and p-toluenesulfonic acid (9.0 mg, 0.05 equiv). The
reaction mixture was then stirred under an atmosphere of
nitrogen at room temperature (15 h). Upon completion of the
reaction as determined by TLC analysis, the reaction mixture
was diluted with dichloromethane, washed with 10% aqueous
sodium bicarbonate solution, and dried over anhydrous sodium
sulfate. Removal of the drying agent followed by concentration
and flash-column chromatography (hexane/ethyl acetate, 1:1)
of the residue afforded the sensitive phenylthiolactam 9. The
semipure phenylthiolactam 9 was added to 95% ethanol (10
mL) followed by an aqueous suspension of Raney nickel (2 mL).
The black suspension was stirred at room temperature (5 h)
while monitoring by TLC. After completion of the desulfur-
ization, the reaction mixture was filtered through Celite under
gentle suction while washing the filter cake with methanol to
prevent the excess Raney nickel from drying. The filtrate was
concentrated and flash-column-chromatographed (toluene/
ethyl acetate, 2:1) to furnish 10 (291 mg, 80%) as white
crystals. Mp 68-71 °C. Rf ) 0.36 (hexane/ethyl acetate, 1:1).
1H NMR (500 MHz, CDCl3) δ: 7.88 (d, J ) 7.8 Hz, 1H), 7.51
(dt, J ) 0.98 Hz, 7.3, 1H), 7.47 (m, 2H), 7.32 (d, J ) 8.8 Hz,
2H), 6.80 (d, J ) 8.8 Hz, 2H), 5.20 (dd, J ) 5.4, 13.7 Hz, 1H),
4.88 (s, 2H,), 4.42 (d, J ) 16.1 Hz, 1H), 4.30 (d, J ) 16.1 Hz,
1H), 3.77 (s, 3H), 2.97 (ddd, J ) 2.4, 4.9, 18.1 Hz, 1H), 2.85
(ddd, J ) 5.4, 13.7, 18.1 Hz, 1H), 2.28 (ddd, J ) 4.9, 13.7, 26.3
Hz, 1H), 2.14 (m, J ) 2.4, 5.4, 12.7 Hz, 1H). 13C NMR (125
MHz, CDCl3) δ: 171.2, 170.2, 169.5, 141.7, 132.2*, 131.8,
130.8*, 129.3, 128.4*, 124.3*, 123.2, 114.0*, 55.5*, 52.8*, 47.3,
43.4, 32.4, 22.9. HRMS (FAB) m/z (M + H)+ calcd for
C
H
13H12N2O3 244.0848, found 244.0842. Anal. Calcd for C13
-
12N2O3: C, 63.92; H, 4.95; N, 11.45. Found: C, 63.73; H, 4.73;
N, 11.05. IR (KBr): 3204, 3099, 1732, 1705, 1680 cm-1
.
2-(1-Be n zyl-2,6-d ioxop ip e r id in -3-yl)isoin d ol-1,3-d i-
on e (12). N-Benzylthalidomide (12) was prepared (13%) from
(()-3-phthalimidophthalic anhydride 4 (871 mg, 3.36 mmol)
and benzylamine (370 mg, 3.39 mmol) in a manner analogous
to that of 7 by method A. Rf ) 0.42 (hexane/ethyl acetate, 1:1).
1H NMR (500 MHz, CDCl3) δ: 7.86 (m, J ) 2.9, 5.4 Hz, 2H),
7.75 (m, J ) 2.9, 5.4 Hz, 2H), 7.37 (d, J ) 8.3 Hz, 2H), 7.29 (t,
J ) 7.3 Hz, 2H), 7.23 (t, J ) 7.3 Hz, 1H), 5.08 (d, J ) 14.2 Hz,
1H), 5.03 (m, 1H), 4.91 (d, J ) 14.2 Hz, 1H), 2.97 (dt, J ) 29,
15.6 Hz, 1H), 2.80 (m, 2H), 2.10 (m, 1H). 13C NMR (125 Mz,
CDCl3) δ: 170.1, 168.9, 167.6, 136. 8, 134.6*, 132.0, 128.9*,
128.7*, 127.8*, 124.0*, 50.5*, 44.1, 32.3, 22.2. HRMS m/z (M+)
calcd for C20H16N2O4 348.1110, found 348.1121. IR (KBr):
1772, 1724, 1687, 1610 cm-1
.
1-Ben zyl-3-(1-oxo-1,3-d ih yd r oisoin d ol-2-yl)p ip er id in e-
2,6-d ion e (13). The N-benzyl derivative (13) was prepared in
the same manner as N-PMB derivative (10) starting from 2-(1-
benzyl-2,6-dioxopiperidin-3-yl)isoindol-1,3-dione (N-benzyltha-
lidomide) 12 (102 mg, 0.29 mmol). Flash column chromatog-
raphy (toluene/ethyl acetate, 2:1) provided 73 mg (75%) of 13
as a white amorphous solid. Rf ) 0.15 (hexane/EtOAc, 1:1).
1H NMR (CDCl3) δ: 7.89 (d, J ) 7.8 Hz, 1H), 7.57 (t, J ) 7.8
Hz, 1H), 7.47 (m, 2H), 7.37 (d, J ) 7.8 Hz, 2H), 7.27 (m, 3H),
5.28 (dd, J ) 5.4, 13.7 Hz, 1H), 4.96 (s, 2H), 4.43 (d, J ) 15.6
Hz, 1H), 4.32 (d, J ) 15.6 Hz, 1H), 2.99 (m, 1H), 2.87 (ddd, J
) 5.4, 13.7, 17.6 Hz, 1H), 2.31 (ddd, J ) 4.4, 13.2, 26.3 Hz,
1H), 2.16 (m, 1H). 13C NMR (125 MHz, CDCl3) δ: 171.2, 170.2,
169.5, 141.7, 137.0, 132.2*, 131.8, 129.2*, 128.7*, 128.4*,
127.9*, 124.4*, 123.2*, 52.7*, 47.4, 44.0, 32.4, 23.0. HRMS m/z
(M+) calcd for C20H18N2O3 334.1317, found 334.1322. IR
(KBr): 1770, 1721, 1708, 1662, 1621 cm-1
.
2-(1-Ben zyloxy-2,6-d ioxop ip er id in -3-yl)isoin d ol-1,3-d i-
on e (14). (()-2-Phthalimidoglutaric acid 5 (5.022 g, 18.1 mmol)
was heated with acetic anhydride (25 mL, mmol) and trifluo-
roacetic anhydride (0.5 mL, mmol) under an atmosphere of
nitrogen at 100° C for 13 h. The volatile components were
removed under high vacuum, which left a white residue of
crude anhydride 4. Pyridine (15 mL, mmol) was added, and
then benzyloxyamine hydrochloride (2.89 g, 18.1 mmol) was
added. The mixture was then heated under an atmosphere of
nitrogen at 60 °C (3 h) followed by removal of the pyridine
under high vacuum at room temperature to yield a dark syrupy
residue. To the residue was added acetic anhydride (25 mL,
mmol) and trifluoroacetic anhydride (0.5 mL, mmol) followed
C
21H21N2O4 365.1501, found 365.1495. IR (KBr): 1702, 1686,
1613 cm-1
.