10.1002/chem.201804505
Chemistry - A European Journal
FULL PAPER
733.3547) [M+H]+ 734.3620, found 734.3623. RP-HPLC: (gradient from
80% to 100% eluent B in 10 min, proceeding at 100% B, 17 min, 25 °C) tR
= 6.1 min, determined purity 98%. Rf = 0.71 (DCM/MeOH (10:1) + droplet
AcOH).
Hz, 2H, Sia-H8), 3.76-3.43 (m, 73H, CH2-O-(CH2)2-O-CH2, N-CH2-CH2-NH,
Fuc-H2, Fuc-H3, Fuc-H4, Sia-H4-H7, Sia-H9), 3.41-3.25 (m, 17H, O=C-
NH-CH2-CH2-O), 3.20 (dt, 3,3J = 18.7, 5.2 Hz, 2H, Fuc-5), 3.16-3.11 (m, 2H,
Sia-H), 2.76-2.70 (m, 4H, O=C-CH2-CH2-C=O), 2.62 (dd, 2,3J = 12.9, 4.6
Hz, 2H, Sia-He3), 2.55-2.47 (m, 21H, O=C-CH2-CH2-C=O), 2.00 (s, 6H,
(NH)CO-CH3 (Sia)), 1.95, 1.95 (s, s, 3H, O=C-CH3), 1.79 (t, 2,3J = 12.4 Hz,
2H, Sia-Ha3), 0.94-0.93 (m, 6H, Fuc-H6). MALDI-TOF-MS: m/z calcd for
C124H193N29O51 [M+Na]+ 2927.34, found 2927.47. HR-ESI-MS: m/z calcd
for C124H193N29O51 (monoisotopic mass 2904.3400): [M+3H]3+ 969.1206,
found 969.1191. RP-HPLC: (gradient from 100% to 50% eluent A in 30 min,
25 °C): tR = 14.6 min, determined purity 99%.
Glycooligomers analysis
1
(Fuc,GalNAc)[2,5]-6 (17): H NMR (600 MHz, D2O): δ [ppm] = 8.50-8.48
(m, 2H, N=N-N-CH), 8.46-8.44 (m, 2H, N=N-N-CH), 8.12-8.09 (m, 2H,
p-HPh), 7.94-7.90 (m, 4H, o-HPh), 4.88 (d, 3J = 3.6 Hz, 2H, Fuc-H1α), 4.84-
4.82 (m, 2H, GalNAc-H1α), 4.75-4.69 (m, 8H, N=N-N-CH2), 4.16 (dt, 2,3J =
10.1, 4.5 Hz, 2H, N=N-N-CH2-CH2), 4.10-4.00 (m, 6H, N=N-N-CH2-CH2
GalNAc-H3), 3.95 (dt, 2,3J = 10.5, 4.8 Hz, 2H, N=N-N-CH2-CH2), 3.87 (d,
3J = 2.9 Hz, 2H, GalNAc-H2), 3.82-3.79 (m, 2H, GalNAc-H4), 3.74-3.44 (m,
62H, CH2-O-(CH2)2-O-CH2, N-CH2-CH2-NH, Fuc-H2, GalNAc-H6, Fuc-H3,
Fuc-H4), 3.40-3.26 (m, 16H, O=C-NH-CH2-CH2-O), 3.22 (dt, 3,3J = 17.7,
5.4 Hz, 2H, Fuc-H5), 3.14-3.09 (m, 2H, GalNAc-H5), 2.76-2.69 (m, 4H,
O=C-CH2-CH2-C=O), 2.55-2.47 (m, 20H, O=C-CH2-CH2-C=O), 1.96, 1.95
(s, s, 3H, (CH2-NH)-(O=)C-CH3), 1.78-1.77 (m, 6H, NH-(O=)C-CH3)
(GalNAc)), 0.93-0.91 (m, 6H, Fuc-H6). MALDI-TOF-MS: m/z calcd. for
C116H181N29O45 [M+Na]+ 2723.28, found 2723.34. HR-ESI-MS: m/z calcd.
for C116H181N29O45 (monoisotopic mass 2700.2766): [M+3H]3+ 901.0995,
found 901.0988. RP-HPLC: (gradient from 100% to 50% eluent A in
30 min, 25 °C): tR = 14.0 min, determined purity 99%.
(Fuc,Sia)[2,5]-6 (20): 1H NMR (300 MHz, D2O): δ [ppm] = 8.46-8.43 (m,
2H, N=N-N-CH), 8.38-8.34 (m, 2H, N=N-N-CH), 8.05-8.01 (m, 2H, p-HPh),
7.89-7.82 (m, 4H, o-HPh), 4.88 (d, 3J = 3.0 Hz, 2H, Fuc-H1α), 4.74-4.60 (m,
8H, N=N-N-CH2), 4.25-4.20 (m, 2H, N=N-N-CH2-CH2), 4.13-3.95 (m, 8H,
N=N-N-CH2-CH2, Sia-H8), 3.85-3.11 (m, 94H, CH2-O-(CH2)2-O-CH2, N-
CH2-CH2-NH, Fuc-H2, Fuc-H3, Fuc-H4, Sia-H4-H7, Sia-H9, O=C-NH-
CH2-CH2-O, Fuc-H-5), 2.77-2.49 (m, 28H, O=C-CH2-CH2-C=O, Sia-H3eq),
2.00 (s, 6H, NC(=O)CH3 (Sia)), 1.95, 1.94 (s, s, 3H, O=C-CH3), 1.75 (t, 2,3
J
= 12.1 Hz, 2H, Sia-H3ax), 0.93 (d, 3J = 6.6 Hz, 6H, Fuc-H6). HR-ESI-MS:
m/z calcd. for C122H189N29O51 (monoisotopic mass 2878.3087): [M+3H]3+
959.7769, found 959.7761. RP-HPLC: (gradient from 100% to 50% eluent
A in 30 min, 25 °C): tR = 13.6 min, 13.8 min, determined purity 96%.
(Fuc,Fuc)[2,5]-6 (21): 1H NMR (600 MHz, D2O): δ [ppm] = 8.39 (s, 4H,
N=N-N-CH), 7.99-7.97 (m, 2H, p-HPh), 7.82-7.79 (m, 4H, o-HPh), 4.78 (d,
3J = 3.1 Hz, 4H, Fuc-H1α), 4.67-4.56 (m, 8H, N=N-N-CH2), 4.04-3.89 (m,
8H, N=N-N-CH2-CH2), 3.63-3.09 (m, 76H, Fuc-H2, Fuc-H3, Fuc-H4, CH2-
O-(CH2)2-O-CH2, N-CH2-CH2-NH, O=C-NH-CH2-CH2-O), 3.06-2.99 (m, 4H,
Fuc-H5), 2.68-2.59 (m, 4H, O=C-CH2-CH2-C=O), 2.47-2.36 (m, 20H, O=C-
CH2-CH2-C=O), 1.86, 1.86 (s, s, 3H, O=C-CH3), 0.82 (d, 3J = 6.5 Hz, 12H,
Fuc-H6). MALDI-TOF-MS: m/z calcd. for C112H175N27O43 [M+Na]+ 2609.2,
found 2609.3. HR-ESI-MS: m/z calcd. for C112H175N27O43 (monoisotopic
mass 2586.2337): [M+3H]3+ 863.0852, found 863.0851. RP-HPLC:
(gradient from 100% to 50% eluent A in 30 min, 25 °C): tR = 14.3 min,
determined purity 99%.
(Fuc,Gal)[2,5]-6 (18): 1H NMR (600 MHz, D2O): δ [ppm] = 8.47-8.44 (m,
4H, N=N-N-CH), 8.05-8.03 (m, 2H, p-HPh), 7.89-7.86 (m, 4H, o-HPh), 4.98
3
(d, J = 3.7 Hz, 2H, Gal-H1α), 4.88 (d, 3J = 3.5 Hz, 2H, Fuc-H1α), 4.75-
4.68 (m, 8H, N=N-N-CH2), 4.17-4.15 (m, 2H, N=N-N-CH2-CH2), 4.10-4.07
(m, 2H, N=N-N-CH2-CH2), 4.02-3.98 (m, 4H, N=N-N-CH2-CH2), 3.83-3.79
(m, 4H, Gal-H2, Gal-H4), 3.76-3.69 (m, 6H, Fuc-H2, Gal-H3, Gal-H6),
3.67-3.43 (m, 55H, CH2-O-(CH2)2-O-CH2, N-CH2-CH2-NH, Fuc-H3, Fuc-
H4), 3.41-3.24 (m, 18H, O=C-NH-CH2-CH2-O, Gal-H6), 3.20 (dt, 3,3J = 19.6,
5.1 Hz, 2H, Fuc-H5), 3.16-3.13 (m, 2H, Gal-H5), 2.75-2.69 (m, 4H, O=C-
CH2-CH2-C=O), 2.54-2.48 (m, 20H, O=C-CH2-CH2-C=O), 1.95, 1.94 (s, s,
3H, O=C-CH3), 0.94-0.92 (m, 6H, Fuc-H6). MALDI-TOF-MS: m/z calcd. for
C
112H175N27O45 [M+Na]+ 2641.2, found 2641.3. HR-ESI-MS: m/z calcd. for
C112H175N27O45 (monoisotopic mass 2618.2235): [M+3H]3+ 873.7485,
found 873.7479. RP-HPLC: (gradient from 100% to 50% eluent A in 30 min,
25 °C): tR = 13.7 min, determined purity 99%.
(Gal,Gal)[2,5]-6 (22): Negative control 22 exhibits galactose units of an
α/β-mixture (3:1). 1H NMR (600 MHz, D2O): δ = 8.38-8.34 (m, 4H, N=N-N-
CH), 7.97-7.91 (m, 2H, p-HPh), 7.81-7.75 (m, 4H, o-HPh), 5.00 (d, 3J =
1.4 Hz, 1H, Gal-H1α), 4.74-4.65 (m, 8H, N=N-N-CH2), 4.45 (d, 3J = 7.4 Hz,
Gal-H1β), 4.39-4.32 (m, 3H, N=N-N-CH2-CH2), 4.19-4.12 (m, 4H, N=N-N-
CH2-CH2), 4.08-4.01 (m, 3H, N=N-N-CH2-CH2, Gal-H2α), 3.92 (d, J = 3.2
Hz, 4H, Gal-H2β), 3.79-3.12 (m, 89H, Gal-H2, Gal-H4, Gal-H5, Gal-H3,
Gal-H6, CH2-O-(CH2)2-O-CH2, N-CH2-CH2-NH, O=C-NH-CH2-CH2-O),
2.76-2.68 (m, 4H, O=C-CH2-CH2-C=O), 2.52-2.47 (m, 20H, O=C-CH2-
CH2-C=O), 1.94-1.92 (m, 3H, O=C-CH3). MALDI-TOF-MS: m/z calcd. for
(Fuc,Lac)[2,5]-6 (19): 1H NMR (600 MHz, D2O): δ [ppm] = 8.58 (s, 2H,
N=N-N-CH), 8.40-8.39 (m, 2H, N=N-N-CH), 8.01-7.09 (m, 2H, p-HPh),
7.88-7.79 (m, 4H, o-HPh), 5.87 (dd, 3,4J = 9.1, 1.7 Hz, 2H, Glc-H1β), 4.87
(d, 3J = 3.4 Hz, 2H, Fuc-H1α), 4.73-4.64 (m, 4H, N=N-N-CH2), 4.57 (d, 3J
= 7.7 Hz, 2H, Gal-H1β), 4.15 (dt, 2,3J = 8.9, 2.0 Hz, 2H, N=N-N-CH2-CH2),
4.08-4.05 (m, 4H, N=N-N-CH2-CH2, Glc-H), 4.00-3.94 (m, 12H, Glc-H, Gal-
H), 3.88-3.84 (m, 2H, Glc-H), 3.82-3.79 (m, 4H, Gal-H2, Gal-H4), 3.74-
3.69 (m, 6H, Fuc-H2, Gal-H3, Gal-H6), 3.64-3.44 (m, 51H, CH2-O-(CH2)2-
O-CH2, N-CH2-CH2-NH, Fuc-H3, Fuc-H4), 3.42-3.27 (m, 17H, O=C-NH-
CH2-CH2-O), 3.24-3.12 (m, 6H, Gal-H6, Fuc-H5, Gal-H5), 2.73-2.68 (m,
4H, O=C-CH2-CH2-C=O), 2.55-2.45 (m, 20H, O=C-CH2-CH2-C=O), 1.94,
1.93 (s, s, 3H, O=C-CH3), 0.95-0.93 (m, 6H, Fuc-H6). MALDI-TOF-MS:
m/z calcd. for C120H187N27O53 [M+Na]+ 2877.3, found 2877.3. HR-ESI-MS:
m/z calcd. for C120H187N27O53 (monoisotopic mass 2854.2768): [M+3H]3+
952.4329, found 952.4325. RP-HPLC: (gradient from 100% to 50% eluent
A in 30 min, 25 °C): tR = 12.8 min, determined purity ≥99%.
C
112H175N27O47 [M+Na]+ 2673.2134, found 2673.294. HR-ESI-MS: m/z
calcd for C112H175N27O47 (monoisotopic mass 2650.2134): [M+3H]3+
884.4117, found 884.4114. RP-HPLC: (gradient from 100% to 50% eluent
A in 30 min, 25 °C): tR = 12.9 min, 13.1 min, 13.3 min, determined purity
99%.
Acknowledgements
The authors would like to thank Mirko Lindic for his help with
(Fuc,Sia(methyl-protected))[2,5]-6 (20-Me): 1H NMR (600 MHz, D2O):
δ [ppm] = 8.48-8.46 (m, 2H, N=N-N-CH), 8.37-8.36 (m, 2H, N=N-N-CH),
8.08-8.06 (m, 2H, p-HPh), 7.92-7.88 (m, 4H, o-HPh), 4.88 (d, J = 3.5 Hz,
synthesizing
azidoethyl-2,3,4,6-tetra-O-acetyl-α-D-
3
galactopyranoside and Mischa Baier for helpful discussions. LH
thanks the DFG for support through the FOR 2327 ViroCarb (HA
5950/5-1) and large equipment grant INST 208/735-1. NLS
2H, Fuc-H1α), 4.76-4.62 (m, 11H, COO-CH3, N=N-N-CH2, overlapping
with HDO-signal), 4.24-4.22 (m, 2H, N=N-N-CH2-CH2), 4.10-4.07 (m, 2H,
3
N=N-N-CH2-CH2), 4.02-3.98 (m, 4H, N=N-N-CH2-CH2), 3.83 (t, J = 10.2
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