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4
groups provides the structural basis for these predictions. The
2S5a skew boat displays most of the bulky groups in pseudo-
equatorial orientations, resulting in a relative low destabilizing
energy value (4.0 kcalmolÀ1).
similar, as expected for the two alternative C1 and 1C4-chair
conformers. The free-energy difference between the two forms
is approximately 0.4 kcalmolÀ1, favouring the C4 chair in the
1
same trend as the energy differences estimated by the calcula-
tions. The energy barrier for interconversion is relatively low
(ca. 11.8 kcalmolÀ1), extremely difficult to access by variable
The conformational behaviour of idose rings and derivatives
thereof has been a matter of investigation for years.[22,42–45] It is
well known that for l-idopyranoses, the theoretically more fa-
vourable 1C4 chair displays three axially oriented hydroxyl
groups, with the corresponding steric consequences. The alter-
1
temperature H NMR spectroscopic experiments in water solu-
tion. The use of 19F NMR spectroscopy has permitted access to
this value, due to the wide accessible chemical shift range.
Indeed, computational chemistry calculations using ab initio
methods (DFT (B3LYP) in vacuum with the different basis sets:
4
native C1 chair places the bulky hydroxymethyl group at the
axial orientation, with the corresponding collapse. Therefore,
alternative skew-boat conformers are also present in the con-
formational equilibrium, depending on the hydroxyl substitu-
tion, chemical environment, and solvent.[46–48] Therefore, the
description of the conformational flexibility of these rings in
terms of thermodynamic parameters as activation free energy,
and entropic and enthalpy contributions to the Gibbs free
energy difference represents a challenge to the experimental
study. Such a description implies access to a detailed and accu-
rate proton-proton coupling constant analysis, which is ham-
pered by signal broadening and or overlapping. In fact, the sit-
uation becomes even more arduous, and most of the times in-
accessible, in cases of fast and medium conformational equili-
bria in the NMR chemical shift timescale, especially when it in-
volves entropically favoured isoforms, such as skew boat
conformers, which is often the case for idose ring derivatives.
As mentioned above, for ido-like sugars, flexibility is intrinsi-
cally related to biological activity. The sulfated l-iduronic rings
represent the paradigmatic example of how plasticity modu-
lates the interaction with biological receptors. From the chemi-
cal perspective, these molecular recognition processes are the
consequence of the balance between enthalpy and entropy
factors and solvation/desolvation effects. In this context, since
conformational entropy becomes an issue, it is essential to
consider that the conformational entropy of chair and skew
boat conformers is intrinsically different. Chair conformers are
defined in well-characterized potential energy wells, while the
conformational entropy of skew boat conformers is larger, due
to the low-energy cost geometry interconversions that con-
duct to basically the same conformer. The energy well for skew
boat conformers is much wider than that for the chairs.
4
1
6-31+ +G, for the C1 and C4 geometries; 6-31+ +G +freq,
for S5a; and 6-31+ +GTS +freq, for 3E and 5aH5), provided
2
energy values fairly similar to those experimentally detected
3
(12.5 kcalmolÀ1 for E and 13.0 for 5aH5).
In contrast, compound 1a shows a unique conformational
behaviour. The chemical shift and coupling constant values
drastically changed upon temperature variation (Figure S14 in
the Supporting Information) indicating that its conformational
distributions depend on the temperature. This observation
strongly suggests that the conformational entropy of the con-
tributing geometries is different. At low temperature, the en-
thalpy-favoured conformer should be predominant, since the
entropy contribution to free energy will be largely attenuated
(DG=DHÀTDS). Fittingly, H2, H3, and H4 shift upfield more
than d=0.1 ppm upon decreasing temperature. Concomitant-
ly, H1 shifted downfield. This fact provides evidence that, at
low temperature, the predominant conformer of 1a displays
H2, H3 and H4 in axial orientation, while H1 shows an equato-
rial arrangement. Therefore, the major and enthalpy-favoured
4
conformer is the C1 chair. The other participating conformer
should display a skew boat geometry since its contribution to
the conformational equilibrium strongly decreases at low tem-
2
perature. Computational chemistry calculations found the S5a
conformer as the most stable skew boat form, with a relative
energy of about 4.0 kcalmolÀ1 with respect to the 4C1 chair.
1
The C4 form was strongly destabilized, by more than 10 kcal
molÀ1. In fact, for the S5a conformer, H2, H3 and H4 display
2
3
3
a quasi-axial orientation, providing large JH2H3 and JH3H4 cou-
plings.
3
3
Since these observed JH2H3 and JH3H4 couplings at room
temperature for both molecules were already rather large
(above 9 Hz), the contribution of the skew boat conformers
would have been clearly neglected from the inspection of the
1H and 13C NMR spectra, unless the 19F NMR spectra would not
have shown dramatically broad signals.
Interestingly, the conformational behaviour of these 19F-con-
taining glycomimetics remarkably resembles the intrinsic flexi-
bility of the natural Ido-configurated sugars (Table S5 in the
Supporting Information). Although this fact might not com-
pletely surprising, as a matter of fact, regular Ido-like carbasu-
gars,[49] with a CH2 group mimicking the endocyclic oxygen
atom, did not show any conformational plasticity (Table S5 in
the Supporting Information). In contrast, the molecules pre-
sented herein, with CF2 moieties resembling the endocyclic
oxygen atom show important conformational plasticity. The
dynamic process has been quantified in terms of energy barri-
Under these premises, the obtained results can now be ac-
counted for in a satisfactory manner. Compound 1b (Glc-like)
4
displays a unique C1 chair conformer with a very well defined
geometry, as in the natural compound. Similarly to the natural
Ido-like molecule, compound 2, displays significant conforma-
tional distortions. There is a clear-cut behaviour for compound
2. 19F-based variable temperature experiments demonstrate
the existence of a conformational equilibrium between two
forms with an approximately 70:30 population distribution.
The observed coupling constants are in fact in agreement with
4
1
a 70:30 distribution between the canonical C1 (minor) and C4
(major) chair forms (Table S4 in the Supporting Information).
No changes in either chemical shifts or coupling constants are
observed with temperature, which indicates that the confor-
mational distribution is temperature-independent. Therefore,
the conformational entropy of the contributing geometries is
Chem. Eur. J. 2015, 21, 10513 – 10521
10519
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