S. Sidique et al. / Bioorg. Med. Chem. Lett. 19 (2009) 5773–5777
5777
O
ated the in vitro activity of a series of pyrazole derivatives contain-
O
NH2
ing ester isosteres. Of these analogues, the alkene 14 (IC50
=
N
H
N
N
N
Cl
Pyridine, dioxane
N
13.8 M) and amide 15 (IC50 = 16.0 M) derivatives are highly sta-
l
l
ble inhibitors of WNV NS2B-NS3 proteinase. These compounds,
which interact with an allosteric site on the enzyme,10 are promis-
ing leads for additional optimization studies and may find utility in
in vitro studies to elucidate the biochemistry and enzyme kinetics
of WNV NS2B-NS3 proteinase.
3-methyl-1-phenyl-1H-pyrazol-5-amine
15
O
S
O
AcOH
EtOH
H2N
H3C
CN
NHNH2
MeO
N
H2N
N
O
S O
Acknowledgments
O
O
Cl
This work was supported by NIH grants U01 AI078048 and U54
HG005033.
N
N
H
OMe
16
N
Pyridine
dioxane
O
S O
References and notes
17
1. Campbell, G. L.; Marfin, A. A.; Lanciotti, R. S.; Gubler, D. J. Lancet Infect. Dis.
2002, 2, 519.
OMe
2. Van der Meulen, K. M.; Pensaert, M. B.; Nauwynck, H. J. Arch. Virol. 2005, 150,
637.
Scheme 4. Synthetic routes to prepare pyrazole amide analogues.
3. Hayes, C. G. Ann. N. Y. Acad. Sci. 2001, 951, 25.
4. Bera, A. K.; Kuhn, R. J.; Smith, J. L. J. Biol. Chem. 2007, 282, 12883.
5. Ekonomiuk, D.; Su, X.; Ozawa, K.; Bodenreider, C.; Lim, S. P.; Yin, Z.; Keller, T.
H.; Beer, D.; Patel, V.; Otting, G.; Caflisch, A.; Huang, D. PLoS Negl. Trop. Dis.
2009, 3, 356.
6. Tomlinson, S. M.; Watowich, S. J. Biochem 2008, 47, 11763.
7. Stoermer, M. J.; Chappell, K. J.; Liebscher, S.; Jensen, C. M.; Gan, C. H.; Gupta, P.
K.; Xu, W.; Young, P. R.; Fairlie, D. P. J. Med. Chem. 2008, 51, 5714.
8. Mueller, N. H.; Pattabiraman, N.; Ansarah-Sobrinho, C.; Viswanathan, P.;
Pierson, T. C.; Padmanabhan, R. Antimicrob. Agents Chemother 2008, 52, 3385.
9. Chappell, K. J.; Stoermer, M. J.; Fairlie, D. P.; Young, P. R. Curr. Med. Chem 2008,
15, 2771.
10. Johnston, P. A.; Phillips, J.; Shun, T. Y.; Shinde, S.; Lazo, J. S.; Huryn, D. M.;
Myers, M. C.; Ratnikov, B.; Smith, J. W.; Su, Y.; Dahl, R.; Cosford, N. D. P.;
Shiryaev, S. A.; Strongin, A. Y. Assay. Drug Dev. Technol. 2007, 5, 737.
11. Myers, M. C.; Napper, A. N.; Motlekar, N.; Shah, P. P.; Chiu, C.; Beavers, M. P.;
Diamond, S. L.; Huryn, D. M.; Smith, A. B., III Bioorg. Med. Chem. Lett. 2007, 17,
4761.
derivative 14 was accomplished using pTsOH in hot toluene
(Scheme 3).
Treatment of 3-methyl-1-phenyl-1H-pyrazol-5-amine with
benzoyl chloride in the presence of pyridine and dioxane furnished
the amide derivative 15. N-(1-(4-Methoxyphenylsulfonyl)-3-
methyl-1H-pyrazol-5-yl)benzamide (17) was prepared by the
condensation of 3-aminocrotononitrile with 4-methoxybenzene-
sulfonohydrazide to afford pyrazole 16 followed by reaction of
benzoyl chloride (Scheme 4). The in vitro data for some of the tar-
get compounds are shown in Table 4. All of the alcohol derivatives
were inactive up to the highest concentration tested (100 lM)
while the two ketone derivatives exhibited IC50 values in the high
micromolar range. Encouragingly, however, the alkene derivative
12. Synthesis of 10a: a solution of (4-methoxybenzyl)hydrazine (2.0 g, 0.013 mol)
and ethyl acetoacetate (1.8 mL, 0.014 mol) in glacial acetic acid (54.0 mL) was
stirred and heated at 100 °C over night. The solvent was evaporated and the
product purified using automated medium pressure silica gel chromatography
(ISCO) eluting with 20–80% EtOAc/CH2Cl2 to obtain 1-(4-methoxybenzyl)-3-
methyl-1H-pyrazol-5-ol (8) (1.28 g, 46%) as a white solid. 1H NMR (300 MHz,
DMSO-d6): d 7.12 (d, J = 8.70 Hz, 2H), 6.86 (d, J = 8.40 Hz, 2H), 5.15 (s, 1H), 4.86
(s, 2H), 3.71 (s, 3H), 2.00 (s, 3H). A mixture of 8 (53.4 mg, 0.24 mmol), Et3N
(0.2 mL, 1.43 mmol) and benzoyl chloride (0.03 mL, 0.29 mmol) were dissolved
in CHCl3 (2 mL) and allowed to react at room temperature for 5 min. The crude
reaction mixture was dissolved in water (10 mL) and extracted with CH2Cl2
(20 mL). The organic layer was separated and the solvent was removed in
vacuo. The crude residue was purified using preparative HPLC to obtain the
title compound (65.3 mg, 84%) as a white solid. 1H NMR (300 MHz, DMSO-d6):
d 8.09 (d, J = 7.80 Hz, 2H), 7.80–7.75 (m, 1H), 7.64–7.59 (m, 2H), 7.14 (d,
J = 8.40 Hz, 2H), 6.85 (d, J = 8.40 Hz, 2H), 6.07 (s, 1H), 5.14 (s, 2H), 3.69 (s, 3H),
2.16 (s, 3H) 13C NMR (75 MHz, DMSO-d6): d 161.6, 158.6, 146.1, 143.9, 134.6,
130.0, 129.1, 128.9, 128.8, 127.4, 113.9, 94.0, 55.0, 50.2, 14.1. LRMS (ESI):
323.00 (M+1)+.
14 was more potent with IC50 = 13.8
l
M, while the amide deriva-
tives 15 (IC50 = 16.0 M) and 17 (IC50 = 9.2
l
lM) showed activity
in a comparable range in the in vitro enzyme assay. Compounds
14, 15 and 17 were also tested for stability in pH 8 buffer (Table
5). Interestingly, while the alkene (14) and amide 15 were highly
stable, the amide 17 possessed a relatively short half-life of 1.25 h.
In conclusion, we have described the design and synthesis of 3-
substituted pyrazole ester derivatives which are active as allosteric
inhibitors of West Nile Virus NS2B-NS3 proteinase. Two com-
pounds, 7a and 10a, while less potent than the original hits (1.96
and 4.03 lM IC50, respectively) are significantly more stable in
pH 8 buffer. In addition, we have designed, synthesized and evalu-
Table 4
Summary of in vitro data for ester isosteres.
13. WNV NS2B-NS3 proteinase activity assay with Pyr-RTKR-AMC fluorogenic
substrate: the assay for WNV NS2B-NS3 protease activity was performed in
10 mM Tris–HCl buffer, pH 8.0, containing 20% (v/v) glycerol and 0.005% Brij
Compounds
R1
R2
IC50 (lM)
12a
12b
13a
13b
13c
14
H
F
H
F
F
F
H
F
H
F
H
F
>100
>100
>100
23.9
38.8
13.8
35. The substrates and enzyme concentrations were 25 lM and 10 nM,
respectively. The total assay volume was 0.1 mL. Initial reaction velocities
were monitored continuously at kex (excitation wavelength) of 360 nm and kem
(emission wavelength) of 465 nm on a Spectramax Gemini EM fluorescence
spectrophotometer (Molecular Devices). All assays were performed in
triplicate in wells of a 96-well plate. The Km and kcat values were derived
from a double-reciprocal plot of 1/V0 against 1/[S], using the Lineweaver–Burk
transformation: 1/V0 = Km/Vmax  1/[S] + 1/Vmax, where V0 is the initial velocity
of substrate hydrolysis, [S] is the substrate concentration, Vmax is the maximum
rate of hydrolysis, and Km is the Michaelis–Menten constant. The concentration
of the catalytically active proteinase was measured using the fluorescent assay
by titration against a standard aprotinin solution of known concentration. The
concentration of active NS2B-NS3 was close to 100% when compared with the
total protein in the sample. For the determination of the IC50 value of the
inhibitors, NS2B-NS3 proteinase was pre-incubated for 60 min at 18 °C with
increasing concentrations of the inhibitors. Following addition of the Pyr-
Table 5
Time-dependant degradation of pyrazoles.a
Compounds
t1/2 (h)b
14
15
17
13
>96
1.25
RTKR-AMC substrate (25 lM), the rate of substrate hydrolysis was monitored,
and IC50 values were determined using routine kinetics software.
14. Charton, M. J. Am. Chem. Soc. 1969, 91, 619.
15. Charton, M. J. Am. Chem. Soc. 1969, 91, 624.
a
The compounds were dissolved in <10% DMSO, pH
Chlorpromazine (15 mM).
8
buffer (1 mM) and
b
Degradation of compound w.r.t standard.
16. Sviridov, S. I.; Vasil’ev, A. A.; Shorshnev, S. V. Tetrahedron 2007, 63, 12195.