Journal of Medicinal Chemistry
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was evaporated under vacuum, and the residue was purified by flash
ution of 53 (200 mg, 0.42 mmol) in 33% HBr (solution in AcOH, 5
mL) and DCM (10 mL) was stirred under reflux for 24 h. The solvent
was removed under vacuum, and the residue was basified with 28−
30% v/v aq NH4OH and extracted with DCM/2-PrOH (3:1). The
crude material was purified by flash chromatography eluting with 10%
DMA. 54 eluted first as yellow oil (60 mg, 31% yield): 1H NMR (400
MHz, CDCl3): δ 7.20−7.07 (m, 3H), 6.94 (dd, J = 7.6, 1.5 Hz, 1H),
6.91−6.66 (m, 4H), 6.64 (d, J = 1.0 Hz, 1H), 6.64−6.47 (m, 2H),
3.83 (t, J = 7.6 Hz, 1H), 3.73 (s, 3H), 3.01 (br s, 4H), 2.76 (br s + q, J
= 7.5 Hz, 6H), 2.49−2.36 (m, 2H), 2.35−2.15 (m, 2H), 1.36−1.17 (t,
J = 7.5 Hz, 3H). HRMS (C28H33ClN2O2 + H)+: calcd, 465.23033;
found, 465.22945 (error 1.9 ppm). 55 eluted second as a yellow oil
(25 mg, 13% yield): 1H NMR (400 MHz, CDCl3): δ 7.09 (td, J = 7.8,
2.4 Hz, 3H), 6.93 (dd, J = 7.6, 1.5 Hz, 1H), 6.85−6.69 (m, 3H), 6.63
(ddd, J = 8.1, 2.5, 0.9 Hz, 2H), 6.55 (t, J = 1.9 Hz, 2H), 3.75 (q, J =
7.9 Hz, 1H), 2.97 (br s, 4H), 2.75−2.60 (br s + q, J = 7.6 Hz, 6H),
2.43 (br s, 2H), 2.26−2.15 (m, 2H), 1.30−1.16 (t, J = 7.5 Hz, 3H).
HRMS (C27H31ClN2O2 + H)+: calcd, 451.21468; found, 451.21429
(error 0.9 ppm).
chromatography eluting with 5% DMA. The desired product was
1
obtained as colorless oil (550 mg, 88% yield). H NMR (400 MHz,
CDCl3): δ 7.26 (m, 1H), 7.16 (q, J = 7.6 Hz, 2H), 6.90−6.79 (m,
3H), 6.79−6.67 (m, 4H), 6.67−6.60 (m, 1H), 6.20−6.11 (m, 1H),
3.74 (d, J = 5.4 Hz, 6H), 3.38−3.33 (m, 4H), 3.08 (br s, 4H), 2.74
(m, 2H), 2.58 (br s, 2H), 2.42 (m, 2H), 1.47 (m, 2H), 1.28 (m, 2H);
13C NMR (101 MHz, CDCl3): δ 175.73, 159.49, 159.43, 150.75,
142.64, 140.20, 134.01, 129.39, 129.11, 127.48, 127.47, 124.83,
122.01, 119.88, 118.71, 115.22, 113.32, 112.98, 112.85, 57.48, 55.20,
55.16, 53.39, 52.57, 52.48, 51.42, 50.27, 30.90, 23.33, 23.10, 21.27.
HPLC analysis method: Chiralpak AD-H analytical column (4.5 mm
× 250 mm5 μm particle size); mobile phase: isocratic 20% 2-PrOH
in hexanes; flow rate: 1 mL/min; injection volume: 20 μL; sample
concentration: ∼1 mg/mL; multiple DAD λ absorbance signals
measured in the range of 210−280 nm, Rt 6.538 min, purity >95%
(absorbance at 254 nm). HRMS (C31H37N3O2Cl2 + H)+: calcd,
554.23356; found, 554.23390.
3,3′-(3-((4-(4-Phenylpiperazin-1-yl)butyl)amino)propane-1,1-
diyl)diphenol (51). A suspension of 50 (250 mg, 0.45 mmol) and Pd/
C (20% wt wet, 0.05 equiv) in EtOH (10 mL) was shaken in a Parr
apparatus under 50 psi pressure of hydrogen gas for 12 h. The mixture
was filtered through a pad of Celite, the solvent was evaporated under
vacuum, and the residue was purified trough a pad of silica eluting
with 5% DMA. This intermediate was dissolved in 33% HBr (solution
in AcOH, 2 mL) and stirred under reflux for 48 h. The solvent was
removed under vacuum, and the residue was basified with 10% v/v
NH4OH solution in methanol. The crude material was purified by
flash chromatography eluting with 25% DMA. The desired product
was obtained as yellow oil (6.8 mg, 29% yield). 1H NMR (400 MHz,
CDCl3): δ 7.28−7.19 (m, 1H), 7.09 (t, J = 7.8 Hz, 2H), 6.90−6.80
(m, 2H), 6.71−6.60 (m, 4H), 6.55 (s, 2H), 5.44 (br s, 2H), 3.81 (t, J
= 7.9 Hz, 1H), 3.09 (t, J = 5.0 Hz, 4H), 2.61 (s, 2H), 2.49 (dt, J =
11.8, 5.4 Hz, 6H), 2.25 (p, J = 7.5 Hz, 4H), 1.30−1.16 (m, 4H); 13C
NMR (101 MHz, CDCl3): δ 172.49, 157.37, 150.94, 145.43, 129.75,
129.07, 119.90, 119.43, 116.11, 114.54, 114.47, 65.83, 58.11, 52.97,
34.26, 26.57, 25.34, 24.12, 22.59, 15.25. HPLC analysis method:
Chiralpak AD-H analytical column (4.5 mm × 250 mm5 μm
particle size); mobile phase: isocratic 20% 2-PrOH in hexanes + 0.1%
DEA; flow rate: 1 mL/min; injection volume: 20 μL; sample
concentration: ∼1 mg/mL; multiple DAD λ absorbance signals
measured in the range of 210−280 nm, Rt 38.741 min, purity >95%
(absorbance at 254 nm). HRMS (C29H37N3O2 + H)+: found,
460.29628.
trans-Ethyl (Z)-2-((1S,5S)-2-(4-(1H-Indole-2-carboxamido)butyl)-
5-(3-hydroxyphenyl)-2-azabicyclo[3.3.1]nonan-9-ylidene)acetate
(57). A solution of 56 (20 mg, 66 μmol), N-(4-oxobutyl)-1H-indole-
2-carboxamide57 (18 mg, 80 μmol), and catalytic AcOH (0.01 equiv)
in DCE (10 mL) was stirred at RT for 1 h, followed by portionwise
addition of STAB (30 mg, 66 μmol). The reaction mixture was stirred
for additional 30 min and basified with 10% NH4OH solution in
MeOH (10 mL), the solvent was evaporated under vacuum, and the
residue was purified by flash chromatography eluting with 20% DMA.
The desired product was obtained as colorless oil (30 mg, 88% yield).
1H NMR (400 MHz, CDCl3): δ 9.30 (s, 1H), 7.61 (dd, J = 8.0, 1.0
Hz, 1H), 7.46−7.38 (m, 1H), 7.32−7.08 (m, 3H), 6.97−6.78 (m,
4H), 6.78−6.70 (m, 1H), 5.30 (s, 1H), 5.16 (d, J = 17.9 Hz, 2H),
4.13−3.92 (m, 2H), 3.63−3.44 (m, 2H), 3.20 (ddd, J = 13.2, 8.9, 4.8
Hz, 1H), 2.73 (ddt, J = 17.8, 12.3, 5.8 Hz, 3H), 2.46 (ddd, J = 14.4,
8.7, 6.0 Hz, 1H), 2.27−2.00 (m, 5H), 1.90−1.50 (m, 6H), 1.14 (t, J =
7.1 Hz, 3H); 13C NMR (101 MHz, CDCl3): δ 167.91, 166.96, 161.79,
155.61, 148.65, 136.14, 131.04, 129.25, 127.68, 124.33, 121.83,
120.55, 119.46, 115.00, 114.38, 113.60, 111.89, 102.22, 59.92, 55.45,
53.31, 48.76, 45.69, 40.19, 39.34, 38.73, 30.66, 27.22, 24.50, 20.48,
14.13. HPLC analysis method A: Chiralpak AD-H analytical column
(4.5 mm × 250 mm5 μm particle size); mobile phase: isocratic
20% 2-PrOH in hexanes; flow rate: 1 mL/min; injection volume: 20
μL; sample concentration: ∼1 mg/mL; multiple DAD λ absorbance
signals measured in the range of 210−280 nm, Rt 30.677 min, purity
>99%, ee >99% (absorbance at 254 nm). HPLC analysis method B:
Chiralpak AD-H analytical column (4.5 mm × 250 mm5 μm
particle size); mobile phase: isocratic 30% 2-PrOH in hexanes; flow
rate: 1 mL/min; injection volume: 20 μL; sample concentration: ∼1
mg/mL; multiple DAD λ absorbance signals measured in the range of
210−280 nm, Rt 13.495 min, purity >99%, ee >99% (absorbance at
254 nm). HRMS (C31H37O4N3 + H+): calcd, 516.28568; found,
516.28475 (error −1.8 ppm).
trans-Ethyl (Z)-2-((2S,6R)-6-(((2-(2-(1H-Indole-2-carboxamido)-
ethyl)cyclopropyl)methyl)(ethyl)amino)-2-(3-hydroxyphenyl)-2-
methylcyclohexylidene)acetate (58). The reaction was performed
following the same procure described for 57, starting from 56 (20 mg,
66 μmol) and N-(2-(2-formylcyclopropyl)ethyl)-1H-indole-2-carbox-
amide45 (17 mg, 66 μmol). The desired product was obtained as
colorless oil (23 mg, 65% yield). 1H NMR (400 MHz, CDCl3)
mixture of diastereomers observed: δ 9.33 (s, 1H, dr 60:40), 7.62 (dd,
J = 8.1, 3.8 Hz, 1H), 7.47−7.39 (m, 1H), 7.34−7.25 (m, 1H), 7.23−
7.08 (m, 2H), 6.93 (d, J = 10.1 Hz, 1H), 6.89−6.69 (m, 3H), 6.60 (s,
1H), 5.25−5.10 (m, 2H), 4.13−3.95 (m, 2H), 3.72−3.49 (m, 2H),
3.16 (d, J = 12.3 Hz, 1H), 2.96−2.74 (m, 2H), 2.46 (dd, J = 14.2, 6.9
Hz, 1H), 2.37−2.27 (m, 1H), 2.25−1.98 (m, 7H), 1.64−1.49 (m,
4H), 1.38−1.24 (m, 1H), 1.15 (dt, J = 8.2, 7.1 Hz, 3H), 0.89 (d, J =
62.8 Hz, 1H, dr 60:40), 0.69 (d, J = 52.6 Hz, 1H, dr 60:40), 0.32 (dt,
J = 17.8, 5.9 Hz, 1H); 13C NMR (101 MHz, CDCl3): δ 166.85,
166.83, 161.95, 161.69, 156.18, 155.88, 136.29, 136.20, 130.95,
130.50, 129.23, 129.13, 127.69, 127.56, 124.62, 124.40, 121.90,
1-(3,3-Bis(3-methoxyphenyl)allyl)-4-(2-chloro-3-ethylphenyl)-
piperazine (52). The reaction was performed following the same
procure described for 50, starting from 1-(2-chloro-3-ethylphenyl)-
piperazine14 (180 mg, 0.78 mmol). The desired product was obtained
as colorless oil (330 mg, 88% yield). 1H NMR (400 MHz, CDCl3): δ
7.24−7.11 (m, 3H), 7.00−6.66 (m, 8H), 6.31 (t, J = 7.0 Hz, 1H),
3.79 (d, J = 14.0 Hz, 6H), 3.34 (d, J = 6.9 Hz, 2H), 3.14 (br s, 4H),
3.00−2.76 (br s, 4H), 2.76 (q, J = 7.5 Hz, 2H), 1.21 (t, J = 7.5 Hz,
3H).
1-(3,3-Bis(3-methoxyphenyl)propyl)-4-(2-chloro-3-ethylphenyl)-
piperazine (53). A suspension of 52 (330 mg, 0.69 mmol) and Pd/C
(20% wt wet, 0.05 equiv) in EtOAc/EtOH (10:5 mL) was shaken in a
Parr apparatus under 30 psi pressure of H2 for 3 h. The mixture was
filtered through a pad of Celite, the solvent was evaporated under
vacuum, and the desired product was obtained as colorless oil (250
1
mg, 75% yield). H NMR (400 MHz, CDCl3): δ 7.18 (dt, J = 20.9,
7.8 Hz, 3H), 6.94 (ddd, J = 11.1, 7.8, 1.5 Hz, 2H), 6.90−6.67 (m,
6H), 3.96−3.86 (m, 1H), 3.82−3.67 (br s, 6H), 3.10 (br s, 4H), 2.76
(br s + q, J = 7.5 Hz, 6H), 2.50 (dd, J = 9.9, 5.8 Hz, 2H), 2.06 (m,
2H), 1.29−1.15 (t, J = 7.5 Hz, 3H). HRMS (C29H35ClN2O2 + H)+:
calcd, 479.24598; found, 479.24505 (error 1.9 ppm). The free base
(50 mg) was converted into the corresponding oxalate salt. mp: salt
decomposes above 100 °C.
3-(3-(4-(2-Chloro-3-ethylphenyl)piperazin-1-yl)-1-(3-
methoxyphenyl)propyl)phenol (54) and 3,3′-(3-(4-(2-Chloro-3-
ethylphenyl)piperazin-1-yl)propane-1,1-diyl)diphenol (55). A sol-
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J. Med. Chem. 2021, 64, 7778−7808