P. Tanui et al. / Tetrahedron 66 (2010) 4961e4964
4963
N3
O
Ura
H2N
O
Ura
MMTHN
O
Ura
hexane/ethyl acetate (4:1 v/v) to give the title compound (4.11 g,
94%) as a colorless oil. 1H NMR (CDCl3, 360 MHz)
1H), 4.67 (m, 1H), 3.98 (m, 1H), 3.75 (m, 2H), 3.62 (dd, J¼3.0,
13.7 Hz, 1H), 3.23 (dd, J¼4.7, 13.7 Hz, 1H), 2.12 (m, 1H), 1.84 (m, 1H),
1.58 (m, 1H), 1.49 (s, 3H), 1.32 (s, 3H). 13C NMR (CDCl3, 90 MHz)
O
O
O
H2S
MMT-Cl
67%
d
5.81 (d, J¼3.1 Hz,
OAc
OAc
OAc
two steps
OH
1
OH
12
OH
13
Scheme 2. Synthesis of uridine 50-amino 30-carboxylic acid.
d
111.7, 104.8, 81.2, 80.4, 60.9, 51.5, 42.5, 27.6, 26.6, 26.3.
give the amino acid 13, suitable for solid phase synthesis of
oligoamides.
4.3. 5-Azido-3,5-dideoxy-3-[2-(tert-butyldiphenylsilyoxy)-
ethyl]-1,2-O-isopropylidene- -ribofuranose (9)
a-D
3. Conclusion
tert-Butyldiphenylsilyl chloride (3.1 mL, 11.8 mmol) was added
to a solution of 8 (2.41 g, 9.9 mmol) and imidazole (1.47 g, 21.6
mmol) in anhydrous DMF (20 mL). The solution was stirred at room
temperature over night. The reaction was then quenched with
water, evaporated in vacuum and the residue was dissolved in
EtOAc (20 mL) and washed once with brine (15 mL) then with
water (3ꢂ15 mL). The organic layer was dried over Na2SO4, filtered
and evaporated in vacuum to give the title compound 9 (3.75 g, 79%)
as a crude colorless oil whose purity was acceptable for the next
In summary, we have developed a new synthesis of uridine 50-
azido 30-carboxylic acid 1 from
D-xylose in 14 steps 7% overall yield.
One step reduction followed by protection of amino group gave the
target 50-amino 30-carboxyl uridine 13 in 67% yield. Although the
yield of the new route is somewhat lower than that of our previous
de novo synthesis (nine steps and 19% to 1),7 the ability to produce
enantiomerically pure material on larger scales is an important
advantage for our current studies on solid phase synthesis of oli-
goamides. While the start of our de novo route was limited to ca.
13 mmol scale in the first step, the new route could be easily started
step. 1H NMR (CDCl3, 360 MHz)
d 7.71 (m, 4H), 7.44 (m, 6H), 5.77 (d,
J¼3.4 Hz, 1H), 4.42 (m, 1H), 3.98 (m, 1H), 3.82 (m, 2H), 3.61 (dd,
J¼3.0, 13.7 Hz, 1H), 3.20 (dd, J¼4.8, 13.2 Hz, 1H), 2.17 (m, 1H), 1.84
(m, 1H), 1.55 (m, 1H), 1.49 (s, 3H), 1.29 (s, 3H), 1.11 (s, 9H). 13C NMR
with 200 mmols (30 g) of D-xylose. We envision that the new route
should allow future preparation of the target nucleoside 50-azido
30-carboxylic acids on a gram scale.
(CDCl3, 90 MHz)
d 135.6, 129.7, 127.6, 111.6, 104.9, 80.9, 61.9, 51.6,
42.3, 27.6, 26.8, 19.1. MS (ESI) calcd for C26H35N3NaO4Si 504.2;
found 504.2.
The route presents formal synthesis of all four ribonucleoside 50-
azido 30-carboxylic acids (1) because it makes the common in-
termediate 3 described in our previous work.7 The key features that
ensure efficiency and ease of operations are chemoselective re-
duction of the ester, minimization of protecting group manipula-
tion and minimization of silica gel column purification steps. The
efficiency may be further increased by optimization of the removal
of the 1,2-isopropylydene protecting group. The new route should
facilitate synthesis and testing of amide-modified siRNAs, which
have shown promising results in initial studies.4
4.4. 5-Azido-3,5-dideoxy-3-[2-(tert-butyldiphenylsilyoxy)-
ethyl]-a-D-ribofuranose (10)
A solution of 9 (1.505 g, 3.12 mmol) in anhydrous CH2Cl2
(40 mL) was cooled to 0 ꢀC and then treated with BCl3 (3.12 mL,
3.12 mmol, 1 M solution in hexanes) for 30 min. The reaction was
quenched with saturated NaHCO3 (50 mL) and brought to room
temperature, the aqueous layer was extracted with CH2Cl2
(3ꢂ50 mL). The organic layers were pooled together, dried over
Na2SO4, filtered, and evaporated in vacuum. The residue was
purified on silica gel column using hexane/ethyl acetate (4:1 v/v)
to give the title compound 10 (0.309 g, 0.718 mmol, 23%) as
a colorless oil. After chromatography 0.624 g, 40% of 9 was re-
covered bringing the yield of 10 to 38% based on the recovered
4. Experimental section
4.1. 3-Deoxy-3-(2-hydroxyethyl)-1,2-O-isopropylidene-5-O-
(methanesulfonyl)-a-D-ribofuranose (7)
DIBAL-H (46.5 mL, 45.6 mmol, 25% in hexanes) was added
slowly to a solution of 6 (7.88 g, 23.2 mmol) in anhydrous CH2Cl2
(120 mL) at 0 ꢀC. The solution was stirred at 0 ꢀC for 1 h. The re-
action was quenched by extracting with diluted HCl (0.2%, 150 mL),
the organic layer was separated, filtered to remove solid particles,
and dried over anhydrous Na2SO4. Evaporation gave the title com-
pound 7 (6.43 g, 94%) as a colorless oil, which could be used in next
starting material. The spectroscopic data are for mixture of
a and
b
diastereomers. 1H NMR (CDCl3, 360 MHz)
d
7.70e7.64 (m, 4H),
7.47e7.39 (m, 6H), 5.48 and 5.38 (d, J¼3.4 Hz, 1H), 4.31e4.25 (m,
1H), 4.10e4.04 (m, 1H), 3.83e3.65 (m, 2H), 3.57e3.48 (m, 1H),
3.31 (dd, J¼5.5, 13.2 Hz), 3.12 and 3.03 (dd, J¼4.3, 13.2 Hz),
2.40e2.30 and 2.23e2.14 (m, 1H), 1.97e1.85 (m, 1H), 1.68e1.50
(m, 1H), 1.07 (s, 9H). 13C NMR (CDCl3, 90 MHz)
d 135.5, 132.5,
step without further purification. 1H NMR (CDCl3, 360 MHz)
d 5.78
130.0, 127.8, 102.8, 98.2, 82.9, 80.0, 71.8, 63.3, 54.2, 52.4, 42.8,
28.0, 26.7, 18.9.
(d, J¼3.6 Hz, 1H), 4.69 (m, 1H), 4.44 and 4.26 (ABX, J¼2.2, 4.3,
11.5 Hz, 2H), 4.03 (m, 1H), 3.74 (m, 2H), 3.04 (s, 3H), 2.13 (m, 1H),
1.91 (s, 1H), 1.86 (m, 1H), 1.63 (m, 1H), 1.47 (s, 3H), 1.30 (s, 3H). 13C
4.5. 5-Azido-3,5-dideoxy-3-[2-(tert-butyldiphenylsilyoxy)-
NMR (CDCl3, 90 MHz) d 111.8, 104.9, 81.0, 79.2, 68.6, 60.6, 41.6, 37.6,
ethyl]-1,2-O-diacetyl-a-D-ribofuranose (3)
29.6, 27.5, 26.4. MS (ESI) calcd for 2ꢂC11H20O7SþNa 615.2; found
614.7.
Compound 10 (0.8 g, 1.81 mmol) was dissolved in pyridine/
acetic anhydride (6 mL,1:1 v/v) and stirred at room temperature for
12 h. The solution was concentrated in vacuum, the residue was
dissolved in EtOAc (50 mL) and washed with saturated aqueous
NaHCO3 (3ꢂ50 mL). The organic layer was dried over anhydrous
Na2SO4, filtered, and evaporated under vacuum to give the title
compound 3 (0.809 g, 1.54 mmol, 85%) as colorless oil of purity ac-
ceptable for the next step. The spectroscopic data are for mixture of
4.2. 5-Azido-3,5-dideoxy-3-(2-hydroxyethyl)-1,2-O-
isopropylidene-a-D-ribofuranose (8)
LiN3 (4.48 g, 89.5 mmol) was added to a solution of 7 (5.30 g,
17.9 mmol) in anhydrous DMF (50 mL). The solution was heated to
60 ꢀC and stirred at this temperature for 14 h. The solution was
concentrated in vacuum, the residue was dissolved in ethyl acetate
(40 mL) and washed with brine (30 mL) and water (3ꢂ30 mL), the
organic layer was dried over Na2SO4, filtered, and evaporated in
vacuum. The crude product was purified on silica gel column using
a
and b d 7.69e7.61 (m,
diastereomers. 1H NMR (CDCl3, 360 MHz)
4H), 7.46e7.36 (m, 6H), 6.38 and 6.08 (d, J¼3.1 Hz, 1H), 5.24e5.16
(m, 1H), 4.24e4.18 and 4.13e4.08 (m, 1H), 3.74e3.58 (m, 3H),
3.27e3.23 and 3.18e3.14 (dd, J¼4.3, 13.7 Hz, 1H), 2.77e2.68 and