Xiang et al.
JOCArticle
(9aS)-4-Chloro-N-(4-nitrophenyl)-9a,10,11,12-tetrahydro-9H-
pyrimido[4,5-b]dipyrrolo[1,2-d:10,20-g][1,4]diazepin-9-amine (2.5).
Yield: 69%. 1H NMR (2.5a/2.5b, 8.31 ppm/8.28 ppm) indicated
the ratio of two isomers of 2.5 to be 1:1.0 (2.5a/2.5b): 1H NMR δ
8.31 (s, 1.00H), 8.28 (s, 1.00H), 8.10 (d, 2.77H, J = 9.0 Hz), 8.04
(d, 2.68H, J = 9.0 Hz), 7.05-7.04 (m, 1.18H), 6.98-6.96 (m,
1.21H), 6.70-6.64 (m, 6.32H), 6.31-6.29 (m, 1.47H), 6.24-6.20
(m, 2.77H), 6.02-6.01 (m, 1.63H), 4.88 (d, 1.29H, J = 6.3 Hz),
4.71-4.69 (m, 3.12H), 4.30 (d, 1.37H, J = 7.2Hz), 4.16-4.11 (m,
1.74H), 4.02-3.89 (m, 6.72H), 3.77 (dd, 2.28H, J = 12.3, 7.6
Hz), 2.34-2.22 (m, 4.00H), 2.12-1.80 (m, 13.63H); MS (ESI)
m/z 397.1 [M þ Hþ]. Anal. Calcd for C19H17ClN6O2: C, 57.51;
H, 4.32; N, 21.18. Found: C, 57.44; H, 4.31; N, 21.12.
(9aS)-4-Chloro-9a,10,11,12-tetrahydro-9H-pyrimido[4,5-b]di-
pyrrolo[1,2-d:10,20-g][1,4]diazepin-9-ol (6). (S)-(1-(6-Chloro-
5-(1H-pyrrol-1-yl)pyrimidin-4-yl)pyrrolidin-2-yl)methanol (5)
(139 mg, 0.50 mmol) in 6 mL of DMSO-DCM (1:1) was
treated with TEA (0.703 mL, 5.0 mmol). A solution of SO3-
pyridine (481 mg, 3.0 mmol) in 4 mL of DMSO-DCM (3:1)
was added, and the mixture was stirred for 35 min at ambient
temperature. The reaction solution was then diluted with
DCM (20 mL), washed twice with 10% citric acid and brine,
dried over MgSO4, filtered, and concentrated in vacuo to give
crude aldehyde 1. The crude 1 was dissolved in Cl(CH2)2Cl
(18 mL). To the above solution was added TFA (78 μL, 1.05
mmol). The mixture was stirred for 20 min at ambient tem-
perature, washed with saturated aqueous Na2CO3, dried over
MgSO4, and concentrated in vacuo. Purification by flash
chromatography (petroleum ether/EtOAc = 4:1 to 2:1, v/v)
afforded 4 mg (3%) of compound 6a and 114 mg (83%) of
compound 6b.
7.42 (d, 2H, J = 8.7 Hz), 7.36 (d, 2H, J = 8.7 Hz), 6.43 (t, 1H,
J = 3.3 Hz), 6.14-6.13 (m, 1H), 4.79 (d, 1H, J = 4.2 Hz),
3.58-3.52 (m, 1H), 2.74-2.69 (m, 1H), 2.38-2.33 (m, 1H),
1.84-1.74 (m, 1H), 1.54-1.41 (m, 4H); 13C NMR δ 154.2,
151.6, 142.4, 140.6, 132.8, 129.6, 128.9, 125.4, 120.0, 118.2,
111.5, 107.1, 63.5, 61.4, 46.7, 29.0, 25.9; MS (ESI) m/z 386.0
[M þ Hþ]. Compound 2.4 (2.4a/2.4b = 1:2.1) as starting mate-
rial: 3.4a, 69%; mp 110-112 °C; [R]21D þ405.6 (c 1.0, CHCl3);
1H NMR δ 8.09 (s, 1H), 7.97 (dd, H, J = 3.0, 1.5 Hz), 7.42 (d,
2H, J = 8.7 Hz), 7.36 (d, 2H, J = 9.0 Hz), 6.43(t, 1H, J=3.3 Hz),
6.13 (dd, 1H, J = 3.3, 1.2 Hz), 4.79 (d, 1H, J = 4.2 Hz), 3.58-
3.52 (m, 1H), 2.74-2.67 (m, 1H), 2.38-2.31 (m, 1H), 1.83-1.74
(m, 1H), 1.57-1.37 (m, 4H); 13C NMR δ 154.2, 151.6, 142.4,
140.6, 132.8, 129.6, 128.9, 125.3, 120.0, 118.2, 111.5, 107.2, 63.4,
61.4, 46.6, 29.0, 25.9; MS (ESI) m/z 386.0 [M þ Hþ]. Recrys-
tallization of compound 3.4a by slow evaporation from DCM/
hexane/Et2O afforded a colorless crystal for X-ray diffraction
analysis (see the CIF in the Supporting Information).
(Z)-4-Chloro-11,12-dihydro-10H-pyrimido[4,5-b]dipyrrolo[1,2-
1
d:10,20-g][1,4]diazepine (8): 5-8% yield; oil; H NMR δ 8.12 (s,
1H), 6.75 (d, 1H, J = 3.0 Hz), 6.24 (t, 1H, J = 3.3 Hz), 5.91-5.90
(m, 1H), 5.59 (s, 1H), 3.75 (t, 2H, J = 6.9 Hz), 2.50 (t, 2H, J = 7.5
Hz), 1.98-1.89 (m, 2H); MS (ESI) m/z 259.1 [M þ Hþ].
Competition Experiment 1. To a stirred solution of 2.4 (2.4a/
2.4b =1:2.1) (97 mg, 0.25 mmol) in Cl(CH2)2Cl (9 mL) were
added p-methoxyaniline (31 mg, 0.25 mmol) and TFA (40 μL,
0.525 mmol). After the mixture was stirred for 35 h at 60 °C, the
solvent was removed in vacuo, and DCM (40 mL) was added.
The organic layers were washed with saturated aqueous NaH-
CO3 (20 mL), dried over MgSO4, and concentrated in vacuo to
afford a crude mixture of 3.4a and 3.1a (1H NMR of 8.09 ppm/
8.06 ppm indicated the ratio of 3.4a and 3.1a to be 1.25:1). The
residue was purified by flash column chromatography (petro-
leum ether/EtOAc=2:1, v/v) to afford 66 mg (68%) of a mix-
ture of 3.4a and 3.1a (ratio 1.25:1) and 3 mg (5%) of 8.
(9S,9aS)-4-Chloro-9a,10,11,12-tetrahydro-9H-pyrimido[4,5-b]-
dipyrrolo[1,2-d:10,20-g][1,4]diazepin-9-ol (6a): mp 172-174 °C; 1H
NMR δ 8.25 (s, 1H), 7.04-7.02 (m, 1H), 6.27 (t, 1H, J = 3.0 Hz),
6.24-6.22 (m, 1H), 4.71 (d, 1H, J = 8.4 Hz), 3.96-3.86 (m, 1H),
3.75-3.62 (m, 2H), 2.38-2.34 (m, 1H), 2.12-2.03 (m, 1H),
1.90-1.73 (m, 3H); MS (ESI) m/z 277.1 [M þ Hþ].
Synthesis of 5-Benzyl-1-chloro-N-(4-chlorophenyl)-6,7-dihy-
dro-5H-pyrimido[4,5-b]pyrrolo[1,2-d][1,4]diazepin-7-amine (10).
6-[N-Benzyl(2-ethanol)amino]-4-chloro-5-pyrrol-1-yl-pyrimidine4a
(984 mg, 3.0 mmol) in 20 mL of DMSO-DCM (1:1) was treated
with TEA (4.2 mL, 30 mmol). A solution of SO3-pyridine (2.8 g,
18.0 mmol) in 20 mL of DMSO-DCM (1:1) was added, and the
mixture was stirred for 35 min at ambient temperature. The reaction
solution was then diluted with DCM (60 mL), washed twice with
10% citric acid and brine, dried over MgSO4, and filtered to give
crude aldehyde1a in DCM. To the above solution was added
p-chloroaniline (383 mg, 3.0 mmol). The mixture was stirred for
1 h at ambient temperature, washed with saturated aqueous
Na2CO3, dried over MgSO4, and concentrated in vacuo. Purifica-
tion by flash chromatography (petroleum ether/EtOAc = 4:1 to
2:1, v/v) afforded 770 mg (59%) of product 10: mp 203-204 °C;
1H NMR δ 8.35 (s, 1H), 7.31-7.23 (m, 5H), 7.01-6.97 (m, 3H),
6.37 (d, 2H, J = 8.7 Hz), 6.25 (t, 1H, J = 3.3 Hz), 6.12 (dd, 1H,
J = 3.3, 1.2 Hz), 4.94 (br, 1H), 4.87 (br, 1H), 4.69-4.63 (m, 1H),
3.77-3.73 (m, 2H), 3.65-3.58 (m, 1H); 13C NMR (DMSO-d6)
δ 156.8, 153.4, 152.5, 145.8, 136.8, 134.2, 128.42, 128.39, 127.4,
127.1, 123.5, 120.1, 116.5, 114.6, 108.5, 104.8, 58.8, 54.1, 47.1; MS
(ESI): m/z 436.1 [M þ Hþ]. Anal. Calcd for C23H19Cl2N5: C,
63.31; H, 4.39; N, 16.05. Found: C, 63.22; H, 4.38; N, 15.99.
Competition Experiment 2. To a stirred solution of 5-benzyl-
1-chloro-N-(4-chlorophenyl)-6,7-dihydro-5H-pyrimido[4,5-b]-
pyrrolo[1,2-d][1,4]diazepin-7-amine (10) (43.6 mg, 0.1 mmol) in
DCM (3 mL) were added p-methoxyaniline (12.3 mg, 0.1 mmol)
and TFA (13 μL, 0.18 mmol). The mixture was stirred for 36 h at
room temperature (a trace amount with molecular ion corre-
sponding to 1-chloro-5,6-dihydro-6-[(benzylamino)methyl]-5-
(4-methoxyphenyl)pyrrolo[1,2-f]pteridine (12) was detected by
LC-MS) and then washed with saturated aqueous NaHCO3
(1.5 mL), dried over MgSO4, and concentrated in vacuo.
(9R,9aS)-4-Chloro-9a,10,11,12-tetrahydro-9H-pyrimido[4,5-b]-
dipyrrolo[1,2-d:10,20-g][1,4]diazepin-9-ol (6b): mp 238-239 °C;
[R]23D þ459.0 (c 1.0, CHCl3); 1H NMR δ 8.20 (s, 1H), 7.03 (dd,
1H, J = 3.0, 1.8), 6.18 (t, 1H, J = 3.3), 6.14 (dd, 1H, J = 3.6, 1.5),
4.96 (s, 1H), 3.89-3.74 (m, 3H), 2.16-2.00 (m, 4H), 1.86-1.76
(m, 1H);13CNMR (DMSO-d6) δ155.0, 152.9, 150.1, 135.5, 124.8,
116.2, 108.4, 107.0, 67.8, 64.2, 51.4, 30.8, 21.9; MS (ESI) m/z 277.0
[M þ Hþ]. Anal. Calcd for C13H13ClN4O: C, 56.42; H, 4.74; N,
20.25. Found: C, 56.17; H, 4.72; N, 20.27.
General Procedure for the Synthesis of Pyrrolo[1,2-f]pteridine
3.4a via Smiles Rearrangement. To a stirred solution of 2.4a,
2.4b, or 2.4 (2.4a/2.4b = 1:2.1) (193 mg, 0.5 mmol) in Cl(CH2)2Cl
(18 mL) was added TFA (78 μL, 1.05 mmol). After the mixture
was stirred for the corresponding time at 60 °C, the solvent was
removed in vacuo and DCM (30 mL) was added. The organic
layers were washed with saturated aqueous NaHCO3 (15 mL),
dried over MgSO4, concentrated in vacuo, and purified by flash
chromatography (MeOH/DCM=100:1 to 20:1, v/v) toaffordthe
desired products 3.4a and 8.
(S)-1-Chloro-5-(4-chlorophenyl)-6-((S)-pyrrolidin-2-yl)-5,6-di-
hydropyrrolo[1,2-f]pteridine 3.4a. Compound 2.4a as starting
material: 3.4a, 76%; mp 111-113 °C; [R]21 þ423.2 (c 1.0,
D
CHCl3); 1H NMR δ 8.09 (s, 1H), 7.96 (d, 1H, J=1.5 Hz), 7.42
(d, 2H, J = 8.4 Hz), 7.36 (d, 2H, J = 8.1 Hz), 6.43 (t, 1H, J = 2.7
Hz), 6.13 (t, 1H, J = 1.5 Hz), 4.79 (d, 1H, J = 4.2 Hz), 3.58-3.52
(m, 1H), 2.74-2.67 (m, 1H), 2.38-2.31 (m, 1H), 1.83-1.74 (m,
1H), 1.56-1.35 (m, 4H); 13C NMR δ 154.1, 151.5, 142.4, 140.6,
132.8, 129.5, 128.8, 125.3, 119.9, 118.1, 111.5 107.2, 63.4, 61.3,
46.6, 29.0, 25.9; MS (ESI) m/z 386.1 [M þ Hþ]. Compound 2.4b
as starting material: 3.4a, 75%; mp 110-112 °C; [R]21D þ411.8
(c 1.0, CHCl3); 1H NMR δ 8.09 (s, 1H), 7.97 (d, 1H, J = 1.8 Hz),
J. Org. Chem. Vol. 75, No. 23, 2010 8153