Synthesis and antimicrobial evaluation of some new pyridine based heterocycles

Article abstract of DOI:10.3987/COM-10-11999

A facile and convenient synthesis of pyridine, pyridazine, 2(3H)-1,3,4-thiadiazole and pyrazole derivatives incorporating a pyridine-2-ylcarboxamido moiety via the versatile, readily accessible 3-oxo-N-(pyridin-2-yl)butanamide is described. Antimicrobial

Full text of DOI:10.3987/COM-10-11999

HETEROCYCLES, Vol. 81, No. 10, 2010
2247
HETEROCYCLES, Vol. 81, No. 10, 2010, pp. 2247 - 2256. © The Japan Institute of Heterocyclic Chemistry
Received, 24th June, 2010, Accepted, 10th August, 2010, Published online, 11th August, 2010
DOI: 10.3987/COM-10-11999
SYNTHESIS AND ANTIMICROBIAL EVALUATION OF SOME NEW
PYRIDINE BASED HETEROCYCLES
Elham S. Darwish,1 Nabila A. Kheder,1,2 and Ahmad M. Farag1,*
1Department of Chemistry, Faculty of Science, Cairo University, Giza 12613,
2
Egypt; On leave to Department of Pharmaceutical Chemistry, Faculty of
Pharmacy, King Khalid University, Abha, Saudi Arabia
E-mail: afarag49@yahoo.com
Abstract – A facile and convenient synthesis of pyridine, pyridazine,
2(3H)-1,3,4-thiadiazole and pyrazole derivatives incorporating a pyridine-2-
ylcarboxamido moiety via the versatile, readily accessible 3-oxo-N-(pyridin-
2-yl)butanamide is described. Antimicrobial evaluation of some selected
examples from the synthesized products was carried out and showed moderate
activity.
INTRODUCTION
Recently, we have been involved in a program aiming at the synthesis of a variety of functionally
substituted heterocyclic compounds of potential biological activity from laboratory available starting
material.1-16 During the present phase of our research program, we have found that acetamido derivatives
can possess fungicidal,17 and herbicidal18 activities. A perusal of these finding reveals that heterocyclic
substituted carboxamido derivatives may be of significant biological importance. On the other hand, the
pyridine ring is an essential part of naturally occurring alkaloids with significant biological and
pharmacological properties. In addition, several synthetic pyridine derivatives have been developed as
pharmaceuticals. These include anti-inflammatory, anti-anginal and as clinically useful antihypertensive
agents.19 They are also reported as cyclooxygenase (COX-2/COX-1) inhibitors,20 HMG-CoA reductase
inhibitors21 and as potential antimicrobial agents.22 Hence, it was thought that pyridin-2-ylcarboxamido
moiety, if introduced to a heterocyclic ring system; the resulting compound may have considerable
potency. Considering all these factors, it was thought worthwhile to synthesize some
pyridin-2-ylcarboxamido
derivatives
and
test
their
antimicrobial
activity.
3-Oxo-N-(pyrid-2-yl)butanamide (1)23 seemed to be a good precursor to fulfill our objective.

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HETEROCYCLES, Vol. 81, No. 10, 2010
RESULTS AND DISCUSSION
During our literature search, we have found that the butanamide 1 was reported to react with N,N-
dimethylformamide dimethyl acetal (DMF-DMA) in 1,2-dimethoxyethane to produce 2-
[(dimethylamino)methylene]-3-oxo-N-(pyridin-2-yl)butanamide (2)24 (Scheme 1). When we repeated this
reaction in dry xylene or DMF, we obtained a single product which was identified as 5-acetyl-2-methyl-
6-oxo-N,1-di(pyridin-2-yl)-1,6-dihydropyridine-3-carboxamide (5) (Scheme 1). The IR spectrum of the
isolated product exhibted absorption bands at 1655, 1674 and 3244 due to two carbonyl groups and NH
function, respectively. Its 1H NMR spectrum revealed signals at δ 2.12, 2.53 and 11.06 due to two methyl
groups and NH protons, respectively in addition to an aromatic multiplet in the region δ 7.15-8.70,
13
whereas its C NMR showed 19 carbon signals. Its mass spectrum showed a molecular ion peak at m/z
348. To account for the formation of this product we suggested that the non-isolable intermediate 2
reacted with another molecule of the butanamide 1 and afforded the final product 5 which was identical in
all respects to an authentic sample obtained from the reaction between triethyl orthoformate and the
butanamide 1 using zinc chloride as a catalyst25 (Scheme 1).
OMe
Me2NHC
O
O
MeO
O
O
-2MeOH
N
N Me
+
HN
Me
N
H
N
O
Me
Me
2
1
1
Me
H
Me
O
H
O
O
NMe2
NMe2
H
H
H
H
N
N
NH
O
N
Me
N HO
O
N
N
O
Me
N
4
3
O
Me
O
H
N
-NHMe2
-H2O
N
N
CH(OEt)3 + 1
Me
O
N
5 (80%)
Scheme 1

HETEROCYCLES, Vol. 81, No. 10, 2010
2249
The butanamide 1 was found to couple smoothly with the diazonium chloride 6 (generated from 4-
aminobenzene sulfonamide) in EtOH buffered with sodium acetate, to afford 3-oxo-N-(pyridin-2-yl)-2-[2-
1
(4-sulfamoylphenyl)hydrazono]butanamide (7) (Scheme 2). The H NMR spectrum of the product 7
revealed signal at  2.49 due to CH3 and three D2O-exchangeable signals at  7.34, 11.54 and 13.78 due to
NH2 and two NH protons, respectively in addition to an aromatic multiplet in the region  7.17-8.38. In
addition, its mass spectrum revealed a molecular ion peak at m/z 361. Treatment of the latter compound
with malononitrile furnished 5-cyano-6-imino-4-methyl-N-(pyridin-2-yl)-1-(4-sulfamoylphenyl)-1,6-
dihydropyridazine-3-carboxamide (8) (Scheme 2). The IR spectrum of compound 8 showed an absorption
band at 1668 cm-1 due to amide group, in addition to absorption bands at 2203, 3200 and 3280 cm-1 due to
a nitrile function, NH2 and NH groups, respectively. Its 1H NMR spectrum revealed a signal at  2.49 due
to CH3 and three D2O-exchangeable signals at  7.0, 7.17 and 7.34 due to two NH and NH2 protons,
respectively in addition to an aromatic multiplet in the region  7.73-7.99.
+ -
N2Cl
Me
O
H
O
O
O
N
N
+
N
N
Me
NH
SO2NH2
H
N
1
SO2NH2
7 (82%)
6
O
Me
CN
NH
NC
CN
N
N
H
N
-H2O
N
SO2NH2
8 (66%)
Scheme 2
The nucleophilic addition of the butanamide 1 to phenyl isothiocyanate in DMF, in the presence of
potassium hydroxide, afforded the corresponding potassium salt 9. Heterocyclisation of the intermediate 9
with an equimolar amount of the hydrazonoyl chlorides 10a26 or 10b,27 furnished in each case, one
isolable product (as tested by TLC). The reaction products were identified as 1,3,4-thiadiazole structures
1
13a and 13b, respectively (Scheme 3) as confirmed by the elemental analyses, IR, H NMR and mass
spectral data of the isolated products. For example, the IR spectrum of compound 13b, revealed
absorption bands at 1638, 1657 and 3154 due to two carbonyl groups and NH function, respectively. Its
1H NMR spectrum showed signals at  2.39 due to two CH3 and D2O-exchangeable at  11.02 due to NH

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HETEROCYCLES, Vol. 81, No. 10, 2010
proton, in addition to an aromatic multiplet in the region  7.09-7.47. The forementioned results indicate
that the reaction of the intermediate 9 with compounds 10a and 10b proceeds via loss of aniline molecule
from the non-isolable intermediates 12a and 12b, respectively (Scheme 3).
Treatment of the butanamide 1 with the 2-oxo-N'-(4-sulfamoylphenyl)propanehydrazonoyl chloride
(15),28 in ethanolic sodium ethoxide solution, furnished, one isolable product. The isolated product was
assigned the 3-acetyl-5-methyl-N-(pyridin-2-yl)-1-(4-sulfamoylphenyl)-1H-pyrazole-4-carboxamide (18)
(Scheme 4). The IR spectrum of compound 18 showed absorption bands at 1655, 1672 and 3260-3381
cm-1 corresponding to two carbonyl groups, amino and NH functions, respectively. Its 1H NMR spectrum
revealed signals at δ 2.11, 2.56, 8.30 and 11.06 due to two methyl groups, amino and NH protons,
respectively in addition to an aromatic multiplet in the region δ 7.14-8.71.
O
O
O
Me
- +
N
Ar
O
O
Me
N
PhNCS
H
Cl
K
NH
PhHN
S
N
N
Me KOH
10a,b
H
N
1
9
-KCl
O
O
S
O
O
H
N
N
H
Me
N
N
H
Me
S
N
PhHN
COMe
PhHN
Ar
N
HN N
Ar
COMe
12a,b
11a,b
-PhNH2
O
O
Me
10-13 a
: : Ar = Ph
b
: Ar = 3-ClC6H4
NH
Ar
S
N
N
COMe
N
13a (52%),13b (55%)
Scheme 3
CONCLUSION
In conclusion, the reactivity of 3-oxo-N-(pyridin-2-yl)butanamide (1) was investigated as a versatile and

HETEROCYCLES, Vol. 81, No. 10, 2010
2251
readily accessible building block for the synthesis of new pyridine-based heterocycles of biological and
pharmaceutical importance.
O
O
N
Me
N
H
1
NaOEt
Cl
CH3
H
N
H
N
Me
O
NH
O
O
N
N
HN
Me
O
N
Me
+
N
SO2NH2
H2NO2S
O
O
14
15
16
SO2NH2
O
Me
N
Me
HO
SO2NH2
-H2O
NH
N
N
N
N
H
N
N
O H
O
Me
O
Me
18 (48%)
17
Scheme 4
EXPERIMENTAL
All melting points were measured on a Gallenkamp melting point apparatus. The infrared spectra were
recorded in potassium bromide disks on a Pye Unicam SP 3300 and Shimadzu FT IR 8101 PC infrared
spectrophotometers. The NMR spectra were recorded on a Varian Mercury VX-300 NMR spectrometer.
1H spectra were run at 300 MHz and 13C spectra were run at 75.46 MHz in deuterated chloroform
(CDCl3) or dimethyl sulfoxide (DMSO-d6). Chemical shifts were related to that of the solvent. Mass
spectra were recorded on a Shimadzu GCMS-QP 1000 EX mass spectrometer at 70 e.V. Elemental
analyses and the biological evaluation of the selected newly synthesized heterocyclic compounds were
carried
out
at
the
Microanalytical
Center
of
Cairo
University,
Giza,
Egypt.
3-oxo-N-(pyridin-2-yl)butanamid (1)23 and hydrazonoyl chlorides 10a,26 10b,27 15,28 were prepared
following the literature procedure.
5-Acetyl-2-methyl-6-oxo-N,1-di(pyridin-2-yl)-1,6-dihydropyridine-3-carboxamide (5).
Method A: A mixture of butanamide 1 (1.78 g, 10 mmol) and N,N-dimethylformamide dimethyl acetal
(DMF-DMA) (1.33 mL, 10 mmol) in dry xylene (30 mL) was refluxed for 3 h, then left to cool. The

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HETEROCYCLES, Vol. 81, No. 10, 2010
precipitated product was filtered off, washed with EtOH and dried. Recrystallization from dioxane/ EtOH
o
gave compound 5 in 80% yield, mp. 228-229 oC [lit.,25 mp. 228-230 C]; IR (KBr) v 3244 (NH), 1674
(C=O), 1655 (C=O) cm-1; 1H NMR (DMSO-d6) δ 2.12 (s, 3H, CH3), 2.53 (s, 3H, CH3), 7.15-8.70 (m, 9H,
ArH), 11.06 (s, 1H, D2O-exchangeable NH); 13C NMR (DMSO-d6) δ 18.96, 30.54, 114.69, 119.88,
120.68, 122.94, 123.74, 124.80, 138.17, 139.51, 143.22, 147.99, 149.90, 151.20, 151.96, 154.29, 160.74,
165.15, 195.42; MS m/z (%) 349 (1.61), 348 (M+, 5.48), 347 (1.19), 255 (30.06), 227 (100), 155 (10.17),
121 (6.95), 92 (2.04), 78(74). Anal. Calcd for C19H16N4O3: C, 65.51; H, 4.63; N, 16.08. Found: C, 65.59;
H, 4.69; N, 16.15%.
Method B: A mixture of butanamide 1 (1.78 g, 10 mmol) and DMF-DMA (4.0 mL, 30 mmol) was heated
on a water bath for 1 h, then left to cool. The yellow precipitated product was filtered off, washed with
EtOH and dried. Recrystallization from dioxane/ EtOH gave yellow compound identical in all respects to
compound 5.
Method C: A mixture of butanamide 1 (1.78 g, 10 mmol) and DMF-DMA (1.33 mL, 10 mmol) in DMF (5
mL) was heated on a water bath for 1 h, then left to cool. The yellow precipitated product was filtered off,
washed with EtOH and dried. Recrystallization from dioxane/ EtOH gave compound identical in all
respects to compound 5.
3-Oxo-N-(pyrid-2-yl)-2-(2-(4-sulfamoylphenyl)hydrazono)butanamide (7).
To a cold solution of the butanamide 1 (0.36 g, 2 mmol) in EtOH (50 mL), buffered with sodium acetate
trihydrate (3 g), was added the diazonium chloride
6
[prepared by diazotizing
4-aminobenzenesulfonamide (0.34 g, 2 mmol) in hydrochloric acid (6M, 1.2 mL) with sodium nitrite
solution (0.14 g, 2 mmol) in water (0.5 mL)]. The addition was carried out portionwise with stirring at 0-5
ºC over a period of 30 min. After complete addition, the reaction mixture was stirred for further 4 h, then
kept in an ice chest for 12 h, and finally diluted with water. The precipitated solid was collected by
filtration, washed with water, dried and finally recrystallized from EtOH to afford hydrazone 7 in 82%
o
1
yield, mp 234 C; IR (KBr) v 3337(NH), 3186-3200 (NH2), 1666 (C=O) cm-1; H NMR (DMSO-d6) δ
2.49 (s, 3H), 7.17-7.20 (m, 2H), 7.34 (s, 2H, D2O-exchangeable NH2), 7.67 (d, 2H), 7.84 (d, 2H), 8.15 (d,
1H), 8.38 (m, 1H), 11.54 (s, 1H, D2O-exchangeable NH), 13.78 (s, 1H, D2O-exchangeable NH); 13C
NMR (DMSO-d6) δ 22.49, 114.20, 119.34, 120.87, 127.20, 130.15, 138.07, 138.23, 139.34, 147.33,
151.16, 161.19, 197.75; MS m/z (%) 361 (M+, 15.1), 318 (74.2), 240 (19.4), 176 (14.5), 139 (33.3), 121
(30.6), 120 (10.2), 107 (31.7), 93 (27.4), 92 (7.5), 78 (100), 64 (75.3). Anal. Calcd for C15H15N5O4S: C,
49.85; H, 4.18; N, 19.38. Found: C, 49.78; H, 4.10; N, 19.30%.
5-Cyano-6-imino-4-methyl-N-(pyridin-2-yl)-1-(4-sulfamoylphenyl)-1,6-dihydropyridazine-3-carbox-
amide (8).

HETEROCYCLES, Vol. 81, No. 10, 2010
2253
To an ethanolic solution of hydrazone 7 (0.72 g, 2 mmol) and malononitrile (0.13 g, 2 mmol) was added
few drops of piperidine and the reaction mixture was refluxed for 4 h. The solvent was evaporated under
reduced pressure and the residue was triturated with EtOH, filtered off, washed with EtOH and finally
purified by recrystallization from DMF to afford pyridazine 8 in 66% yield, mp > 300 oC; IR (KBr) v
1
3200-3280 (NH) and (NH2), 2203 (C≡N), 1668 (C=O) cm-1; H NMR (DMSO-d6) δ 2.49 (s, 3H, CH3),
7.0 (s, 1H, D2O-exchangeable NH), 7.17 (s, 1H, D2O-exchangeable NH), 7.34 (s, 1H, D2O- exchangeable
NH2), 7.73-7.99 (m, 8H, ArH); MS m/z (%) 409 (M+, 3.05), 288 (18.41), 156 (11.66), 132 (9.21), 121
(100), 93 (30.5), 78 (70.00). Anal. Calcd for C18H15N7O3S: C, 52.80; H, 3.69; N, 23.95. Found: C, 52.73;
H, 3.60; N, 23.90%.
2-(5-Acetyl-3-(substituted)-1,3,4-thiadiazol-2(3H)-ylidene)-3-oxo-N-(pyridin-2-yl)butanamide (13a,b).
General procedure
To a stirred solution of potassium hydroxide (0.11 g, 2 mmol) in 20 mL DMF was added the butanamide
1 (0.36 g, 2 mmol). After stirring for 30 min, phenyl isothiocyanate (0.27 g, 2 mmol) was added to the
resulting mixture. Stirring was continued for 6 h, and then the appropriate hydrazonoyl chlorides 10a or
10b (2 mmol) was added portionwise over a period of 30 min. After the addition was complete, the
reaction mixture was stirred for additional 12 h, during which the hydrazonoyl chloride went into solution
and a yellow product precipitated. The solid product was filtered off, washed with EtOH and dried,
Recrystallization from EtOH afforded the corresponding products 13a and 13b, respectively.
13a: Yield (52%), mp 170 oC; IR (KBr) v 3424 (NH), 1662 (C=O), 1623 (C=O) cm-1; 1H NMR (CDCl3) δ
2.47 (s, 3H, CH3), 2.49 (s, 3H, CH3), 7.28-7.59 (m,10H, ArH+NH). Anal. Calcd for C19H16N4O3S: C,
59.99; H, 4.24; N, 14.73. Found: C, 60.07; H, 4.29; N, 14.79%.
13b: Yield (55%), mp. 147 oC; IR (KBr) v 3154 (NH), 1657 (C=O), 1638 (C=O) cm-1; 1H NMR (CDCl3)
δ 2.39 (s, 6H, 2CH3), 7.09-7.1 (m, 3H), 7.39-7.47 (m, 5H), 11.02 (s, 1H, D2O-exchangeable NH); MS m/z
(%) 416 (2.01), 415 (3.22), 414 (M+, 14.2), 282 (39.3), 281 (100), 239 (6.20), 227 (21.4), 152 (10.9), 126
(37.3), 99 (25.5), 77 (3.80), 63 (15.1). Anal. Calcd for C19H15ClN4O3S: C, 55.01; H, 3.64; N, 13.50.
Found: C, 55.09; H, 3.69; N, 13.45%.
3-Acetyl-5-methyl-N-(pyridin-2-yl)-1-(4-sulfamoylphenyl)-1H-pyrazole-4-carboxamide (18).
Butanamide 1 (1.78 g, 10 mmol) was added to an ethanolic sodium ethoxide solution [prepared from
sodium metal (0.23 g, 10 mmol) and absolute EtOH (20 mL)] with stirring. After stirring the resulting
solution for 15 min., the 2-oxo-N'-(4-sulfamoylphenyl)propanehydrazonoyl chloride (15) (2.75 g, 10
mmol) was added portionwise and the reaction mixture was stirred further for 12 h at room temperature.
The solid that formed was filtered off, washed with water and dried. Recrystallization from EtOH/dioxane
afforded 18 in 48% yield, mp 220 oC; IR (KBr)  3260-3381 (NH2 + NH), 1672 (C=O), 1655 (C=O) cm-1;
1H NMR (DMSO-d6) δ 2.11 (s, 3H, CH3), 2.56 (s, 3H, CH3), 7.14-7.18 (m, 1H), 7.57-7.63 (m, 2H),

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HETEROCYCLES, Vol. 81, No. 10, 2010
7.82-7.86 (m, 1H), 8.12-8.15 (m, 2H), 8.30 (s, 2H, D2O-exchangeable, NH2), 8.35-8.38 (d, 1H, J = 6.6
Hz), 8.69-8.71 (d, 1H, J = 6.6 Hz), 11.06 (s, br., 1H, D2O-exchangeable, NH). Anal. Calcd for
C18H17N5O4S: C, 54.13; H, 4.29; N, 17.53. Found: C, C, 54.19; H, 4.22; N, 17.58%.
ANTIMICROBIAL EVALUATION
The antibacterial and antifungal activities were carried out in the Microbiology Division of
Microanalytical Center of Cairo University, using the diffusion plate method29-31 a bottomless cylinder
containing a measured quantity (1 mL, mg/mL) of the sample is placed on a dish (9 cm diameter)
containing a solid bacterial medium (nutrient agar broth) or fungal medium (Dox,s medium) which has
been heavily seeded with the spore suspensions of the test organism. After incubation (24 h for bacteria
and 5 days for fungi), the diameter of the clear zone of inhibition surrounding the sample is taken as
measure of the inhibitory power of the sample against the particular test organism. Most of the
compounds were tested against gram negative bacteria [Escherichia coli (EC) in an anaerobic condition],
gram positive bacteria [Staphylococcus albus (SA)] and antifungal activity against Candida albicans (CA)
and Aspergillus flavus (AF). Tetracycline and Amphotericin B were used as references to evaluate the
potency of the tested compounds under the same condition. The results are depicted in Table 1.
Table 1. Antibacterial and Antifungal Activities of the Synthesized Compounds
Inhibition Zone Diameter (IZD)
(mm/mg Compound Tested)
Gram (-)
(EC)
Gram (+)
(SA)
Fungi
Compound No.
(AF)
(CA)
(anaerobic)
0.0
Control: DMSO
0.0
0.0
0.0
5
0
13
++
14
++
14
++
13
++
11
++
0
0
--
--
0
--
0
7
0
--
--
0
--
0
8
0
--
--
0
--
12
++
0
13a
13b
14
++
12
++
--
0
--
--

HETEROCYCLES, Vol. 81, No. 10, 2010
2255
18
12
++
33
+++
--
13
++
31
+++
--
0
11
++
--
--
--
Tetracycline
Amphotericin B
16
19
++
++
Solvent used: dimethylformamide.
Concentration of the sample in 100 µg/mL.
IZD = 2-10 mm beyond control = + (low activity).
IZD = 11-24 mm beyond control = ++ (moderate activity).
IZD = 25-35 mm beyond control = +++ (high activity)
The results revealed that all compounds exhibited moderate activity against Staphylococcus albus (SA).
Compounds 13a,b and 18 exhibited also a moderate activity against Escherichia coli (EC) in an anaerobic
condition. Compounds 13a and 18 exhibited a moderate activity against Candida albicans (CA), and all
compound exhibited almost no activity against Aspergillus fumigatus (AF).
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