Angewandte
Chemie
DOI: 10.1002/anie.201407448
Biosynthesis Very Important Paper
Chemical Probes for the Functionalization of Polyketide
Intermediates**
Elena Riva, Ina Wilkening, Silvia Gazzola, W. M. Ariel Li, Luke Smith, Peter F. Leadlay, and
Manuela Tosin*
Abstract: A library of functionalized chemical probes capable
of reacting with ketosynthase-bound biosynthetic intermediates
was prepared and utilized to explore in vivo polyketide
diversification. Fermentation of ACP mutants of S. lasaliensis
in the presence of the probes generated a range of unnatural
polyketide derivatives, including novel putative lasalocid A
derivatives characterized by variable aryl ketone moieties and
linear polyketide chains (bearing alkyne/azide handles and
fluorine) flanking the polyether scaffold. By providing direct
information on microorganism tolerance and enzyme process-
ing of unnatural malonyl-ACP analogues, as well as on the
amenability of unnatural polyketides to further structural
modifications, the chemical probes constitute invaluable tools
for the development of novel mutasynthesis and synthetic
biology.
enzymes. PKSs utilize a wide range of bioavailable acyl
building blocks (e.g. acetate, propionate, butyrate, etc.) and
iterative decarboxylative Claisen condensation to generate
stereoenriched enzyme-bound polyketide chains, which are
eventually released from PKSs and can be further enzymati-
cally tailored to yield the final bioactive products.[2] Natural
product structural diversification is highly desirable to obtain
novel molecules of increased efficiency and/or novel bioac-
tivity.[3] Synthetic biology is currently seen as a highly
promising avenue to generate novel polyketide derivatives,
especially in the context of modular PKSs.[4] This potential
arises because of the relative amenability of these assembly
lines to genetic manipulation by domain swap and other
redesign.[5–7] Current approaches towards the generation of
unnatural polyketides (compounds which are still made by
enzymatic assembly but are structurally different from the
original products) include semisynthesis, precursor-directed
biosynthesis, mutasynthesis, combinatorial biosynthesis, and
chemogenetics.[8] Chemical synthesis as well as enzyme and
metabolic engineering can be utilized to provide polyketide
machineries with unnatural building blocks. Recent efforts in
these directions have highlighted both the innate and
engineered chemical flexibility of PKSs in accepting a variety
of non-native substrates to generate novel polyketide deriv-
atives in vitro and in vivo, thus opening up the exploitation of
novel chemical spaces and bioactivities for this class of natural
products.[9] We have recently developed synthetic chain
terminators capable of capturing polyketide biosynthetic
intermediates in vitro[10] and in vivo.[11] These chemical
probes (e.g., the b-ketoacids 1a,b; Scheme 1; generated
in situ from the hydrolysis of the corresponding methyl
esters)[11] compete with ACP-bound malonate units for
polyketide chain extension. By reacting with enzyme-bound
biosynthetic intermediates, intermediate-like species (2a,b)
are off-loaded from PKSs and become available for LC-MS
characterization. Further, the use of these molecules in vivo
has allowed us to reveal relatively inaccessible features of
polyketide assembly, such as the timing of ring formation in
the biosynthesis of the polyether antibiotic lasalocid A.[11b]
In characterizing the captured biosynthetic intermediate
species, it occurred to us that it might be possible, by utilizing
further derivatized chemical probes together with suitably
engineered bacterial strains, to rapidly generate a variety of
novel polyketide intermediates and products bearing bioor-
thogonal chemical handles for site-specific modifications,
such as alkyne and azide moieties,[12] as well as pharmaceuti-
cally relevant motifs, such as fluorine.[13] To test our hypoth-
esis, we prepared a small library of second-generation methyl
ester probes characterized by the variation of the N-acyl
A
s direct outcomes of millions of years of structural and
functional evolution, natural products remain at the forefront
of drug discovery and development.[1] Polyketides in partic-
ular constitute a highly diverse family including important
pharmaceuticals and agrochemicals such as the antibiotic
erythromycin A, the cholesterol-lowering agent lovastatin,
the antiparasitic ivermectin, and the immunosuppressant
rapamycin.[2] Polyketides are biosynthesized in microorgan-
isms and plants by the polyketide synthase (PKS) multi-
[*] Dr. E. Riva,[+] Dr. I. Wilkening,[+] S. Gazzola,[$] Dr. M. Tosin
Department of Chemistry, University of Warwick
Library Road, Coventry CV4 7AL (UK)
E-mail: m.tosin@warwick.ac.uk
W. M. A. Li
Department of Chemistry, University of Cambridge
Lensfield Road, Cambridge CB2 1EW (UK)
Dr. L. Smith, Prof. P. F. Leadlay
Department of Biochemistry, University of Cambridge
80 Tennis Court Road, Cambridge CB2 1GA (UK)
[$] Current address: Dipartimento di Scienza e Alta Tecnologia,
Universitꢀ dell’Insubria, 22100 Como (Italy)
[+] These authors contributed equally to this work.
[**] We gratefully acknowledge BBSRC (project grant BB/J007250/1 to
M.T.), the Institute of Advanced Studies at Warwick (Postdoctoral
Research Fellowship to E. R.), the European Commission (Marie
Curie Intra-European Fellowship to I. W.), Dr. Lijiang Song, Philip
Aston, Dr. Rebecca Wills, Dr. Yuki Inahashi, and Prof. Greg Challis
(Warwick Chemistry) for UPLC-MS analyses (Bruker Maxis Impact).
Supporting information for this article (synthesis of probes 3–13
and their use in the fermentation of S. lasaliensis strains, as well as
detailed LC-HR-MSn analysis of all the newly generated polyketide
intermediates and products (24–43, 45, 47–48)) is available on the
Angew. Chem. Int. Ed. 2014, 53, 1 – 7
ꢀ 2014 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
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