522
X. Peng et al. / Bioorg. Med. Chem. Lett. 25 (2015) 519–523
Computational molecular modeling studies were initiated to
begin to define at a molecular level how triazole phenylpiperazines
bind to the D2 or D3 receptors. The Comparative Molecular Similar-
ity Index Analysis (CoMSIA1) for both D2 and D3 provided results in
good agreement with the experimental values for ligand–receptor
affinity (Supplementary Table 2). Because their values only span
one to two orders of magnitude, no statistical analysis was per-
formed. However, (a) the residuals are all reasonably small and
(b) overall trends for the compounds’ predicted affinities agree
with the experimental binding data on both D2 and D3. These mod-
eling studies indicate that the compounds have similar binding
modes at the D2 receptor site as their benzamide counterparts
(WC series), while losing about 10-fold affinity at D3 site.
In the molecular modeling study, both CoMSIA1 models utilized
a combination of steric, electrostatic, hydrophobic and hydrogen
bond donor and acceptor fields. An analysis of the contribution of
each of these components suggests that hydrophobic interactions
and hydrogen binding are the major determinant factors for the
compounds’ binding affinities.
Figure 3. Binding of WC 10 to the human D3 dopamine receptor. The binding of WC
10 and the human D3 receptor model is shown. A stick model is shown for the
backbone atoms of the D3 receptor. Oxygen is depicted in red and the nitrogen
atoms are depicted in blue. The hydrogen bond between the C181 carbonyl and the
amide nitrogen of WC 10 is shown as a dashed green line. This hydrogen bond
appears to be a pivotal interaction for the binding of arylamide phenylpiperazines.
The triazole and isoxazole analogues are unable to make this pivotal hydrogen
bond. Therefore an interaction that is essential for guiding the aryl moiety of the
benzamide towards a second binding pocket has been eliminated.
The replacement of the amide bond in WC series with triazole
was found to reduce both the affinity and selectivity to D3 recep-
tors compared to the WC series (WC 10 vs 4f). A closer examina-
tion of our D3 receptor–ligand binding model reveals that,
besides the salt bridge between the highly conserved residue
Asp3.32 in the transmembrane (TM) 3 helix of the receptor and
the protonated nitrogen on the piperidine scaffold, the benzamide
group on WC 10 potentially forms a critical hydrogen bond with
the D3 receptor (Fig. 3). This hydrogen bond is between the amine
on the benzamide group and the carbonyl of the backbone from
C181 on extracellular loop (EL) 2 of D3. C181 is a highly conserved
cysteine residue, which is involved in the formation of a disulfide
bond between EL2 and the third transmembrane (TM 3) spanning
helix. This disulfide bond plays an important role in the stabiliza-
tion of the GPCR structure. Consequently, the ligand is securely
anchored at the binding site, with its benzamide group extending
toward the extracellular opening of the binding pocket. The exten-
sion of this amine-containing scaffold into a second binding pocket
is crucial for high D3 receptor binding affinity.20
pocket,20 and recently, as a allosteric site for dopamine D3 recep-
tors.23 The four-carbon linker on the ligand scaffold is conforma-
tionally flexible. The benzamide hydrogen bond anchors the
ligand and helps to orient it toward the secondary binding pocket.
Therefore, interactions between the substituents on the benzene
ring with amino acid residues in the secondary binding site
become possible.
The loss of this hydrogen bonding in the triazole analogues
eliminates an important interaction that is essential for guiding
the aryl moiety (of the arylamide) towards a second binding pocket
(Fig. 4). The importance of the carboxamide linker for achieving D3
versus D2 receptor binding affinity and selectivity has been previ-
ously reported.24 The current work further defines the role that this
pivotal pharmacophore plays in the development of dopamine D3
receptor selective ligands.
This second binding pocket is delineated by the residues at the
junction of EL1, EL2 and the interfaces of TM helices 1, 2 and 7 and
opens to the extracellular regions. This region was described in the
dopamine D3 crystal structure paper as a secondary binding
Alignments for the analogues WC 10, 3f, 4f and 5f on the molec-
ular field maps of CoMSIA1 derived for D3 shows that longer car-
bon spacer compounds (4f and 5f) have the aromatic ring
sticking into the hydrophobic favorable regions within the second
Table 2
Intrinsic activity of selected analogues at dopamine D2 and D3 receptorsc
Compound
hD2 HEK
hD3 HEK
Haloperidol
WC 10
WC 44
3c
4b
4c
4f
4g
À0.6 1.6
33.5 3.1
35.3 1.0
53.8 6.1
49.0 3.2
67.8 5.3
38.8 7.6
41.1 8.8
43.1 5.4
31.4 5.0
75.4 5.5
100
4.0 5.5
18.7 2.2
96.2 4.2
50.5 9.9
48.2 5.4
72.4 4.4
107.0 19.3
39.4 5.0
25.9 6.3
67.8 15.6
82.2 10.3
100
5b
5c
5g
Quinpirole
c
The intrinsic activity of the test compounds was evaluated by determining the
percent inhibition of a forskolin-dependent whole cell adenylyl cyclase assay. The
results were normalized to the percent inhibition obtained using the full agonist
quinpirole at human D2 (1 lM) and D3 (100 nM) receptors expressed in stably
transfected HEK 293 cells. For D2 receptors the maximum inhibition was >90% and
for D3 receptors the maximum inhibition ranged from 38% to 53%. The test drug was
used at a concentration equal to approximately 10Â the Ki value that was deter-
mined from the radioligand binding analysis. The mean the SEM values are
reported for n P 3.
Figure 4. Binding modes for triazole analogues of WC 10 with varying carbon
spacer lengths in the human dopamine D3 receptor binding site. A comparison of
the alignments of the triazole analogues (3f, 4f, 5f), with WC 10 in the D3 dopamine
receptor binding site is shown. Oxygen is depicted in red and the nitrogen atoms are
depicted in blue. The hydrogen bond between the carbonyl group of C181 and the
amide nitrogen of WC 10 is shown as a dashed green line. A composite comparison
of the binding 3f, 4f and 5f in the D3 receptor binding site is shown.