6352
R. O. Hughes et al. / Bioorg. Med. Chem. Lett. 21 (2011) 6348–6352
Table 4
PDE6 and PDE11 selectivity data for this set of compounds is
summarized in Table 4. As observed with compound 36, these com-
pounds examined possessed sub-nanomolar PDE5 potency and an
excellent selectivity profile. Interestingly, racemic stereoisomers
49 and 50 displayed somewhat disparate potency and selectivity
profiles. The trans-isomer, 50, was an order of magnitude less potent
(PDE5 IC50 = 0.27 nM) and less PDE6 selective but more PDE11
selective than the cis-isomer. Unfortunately, evaluation of this ser-
ies of compounds in vivo suggested high, non-hepatic clearance.
The rat PK for 48 is representative of the series: clear-
ance = 195 mL/min/kg and %F = 17, following a 2 mpk iv and po
dose. Efforts to improve the PK profile were not successful and the
acidic sub-series was de-emphasized.
Summary of the PDE5 potency and PDE6 and PDE11 selectivity for a series of acidic
analogs
OMe
OPr
O
N
N
N
N
N
NR3R4
X
–NR3R4
PDE5a
0.13
6x/11xb
110/76
O
H
N
Me
46
HO
In summary, we have described the design and synthesis of a
novel series of PDE5 inhibitors which exploited an alternate pro-
jection into the solvent region. Compound 40 was rapidly identi-
fied as an attractive lead molecule and was extensively profiled.
O
H
N
Me
47
48
0.05
0.01
145/129
HO
Me
References and notes
HN
O
172/2090
1. Rashid, A. Clin. Cornerstone 2005, 7, 47.
2. Sandner, P.; Huetter, J.; Tinel, H.; Ziegelbauer, K.; Bischoff, E. Int. J. Impot. Res.
2007, 19, 533.
HO
3. Hughes, R. O.; Walker, J. K.; Cubbage, J. W.; Fobian, Y. M.; Rogier, D. J.; Heasley,
S. E.; Blevis-Bal, R. M.; Benson, A. G.; Owen, D. R.; Jacobsen, E. J.; Freskos, J. N.;
Molyneaux, J. M.; Brown, D. L.; Stallings, W. C.; Acker, B. A.; Maddux, T. M.;
Tollefson, M. B.; Williams, J. M.; Moon, J. B.; Mischke, B. V.; Rumsey, J. M.;
Zheng, Y.; MacInnes, A.; Bond, B. R.; Yu, Y. Bioorg. Med. Chem. Lett. 2009, 19,
4092.
4. Hughes, R. O.; Walker, J. K.; Joseph, R. D.; Heasley, S. E.; Blevis-Bal, R. M.;
Benson, A. G.; Jacobsen, E. J.; Cubbage, J. W.; Fobian, Y. M.; Owen, D. R.; Freskos,
J. N.; Molyneaux, J. M.; Brown, D. L.; Acker, B. A.; Maddux, T. M.; Tollefson, M.
B.; Moon, J. B.; Mischke, B. V.; Rumsey, J. M.; Zheng, Y.; MacInnes, A.; Bond, B.
R.; Yu, Y. Bioorg. Med. Chem. Lett. 2009, 19, 5209.
5. Hughes, R. O.; Rogier, D. J.; Jacobsen, E. J.; Walker, J. K.; MacInnes, A.; Bond, B.
R.; Zhang, L. L.; Yu, Y.; Zheng, Y.; Rumsey, J. M.; Walgren, J. L.; Curtiss, S. W.;
Fobian, Y. M.; Heasley, S. E.; Cubbage, J. W.; Moon, J. B.; Brown, D. L.; Acker, B.
A.; Maddux, T. M.; Tollefson, M. B.; Mischke, B. V.; Owen, D. R.; Freskos, J. N.;
Molyneaux, J. M.; Benson, A. G.; Blevis-Bal, R. M. J. Med. Chem. 2010, 53, 2656.
6. Southern and Southeastern pyridine refer to the location of the Nitrogen in the
right-hand ring (as drawn) system. The propoxy group is on the ‘northern’ side
of the ring system.
NH
49
50
0.27
0.02
47/1390
110/296
COOH
NH
COOH
O
NH
N
51
52
0.02
0.04
246/541
HO
254/1060
HOOC
O
N
53
0.01
119/532
HO
7. Presently, we do not have a compelling structure-based rationale for this
finding.
8. PDB accession codes: 3TGE and 3TGG.
N
9. Data
for
4-[(2-isopropoxyethyl)amino]-7-(6-methoxypyridin-3-yl)-1-(2-
propoxyethyl)pyrido[4,3-d]pyrimidin-2(1H)-one: PDE5 IC50 = 0.1 nM; PDE6/
PDE5 = 450-fold; PDE11/PDE5 = 9560-fold.
10. Hopkins, L. A.; Groome, C. R.; Alex, A. Drug Discovery Today 2004, 9, 430.
11. Ryckmans, T.; Edwards, M. P.; Horne, V. A.; Correia, A. M.; Owen, D. R.;
Thompson, L. R.; Tran, I.; Tutt, M. F.; Young, T. Bioorg. Med. Chem. Lett. 2009, 19,
4406.
12. For the PDE family we determined: PDE1A, PDE1B, PDE1C, PDE2, PDE3A,
PDE3B, PDE4A, PDE4B, PDE4C, PDE7A, PDE7B, PDE8A, PDE8B, PDE9 and PDE10
IC50 >2000 nM. Screening in the CEREP broad screen of >50 off-targets at
10 mM revealed only two weak hits: adenosine A1 IC50 = 440 nM and
acetylcholinesterase IC50 = 5600 nM.
54
55
0.06
0.10
162/297
OH
O
N
143/1330
HOOC
N
a
PDE IC50 (nM).
b
6x = PDE6 IC50/PDE5 IC50; 11x = PDE11 IC50/PDE5 IC50
.
Intrigued by the potency and selectivity profile of 36 we evalu-
ated additional carboxylic acid derivatives. The PDE5 potency and