Inactivation of S-Adenosyl-L-homocysteine Hydrolase
J ournal of Medicinal Chemistry, 1998, Vol. 41, No. 20 3861
and distillation from CaH2 (except THF/potassium) under
argon. Sonication was performed with a 300 Ultrasonik unit.
stirred at ∼0 °C for 2 h and then at ambient temperature
overnight. The solution was washed (NaHCO3/H2O, brine) and
dried (MgSO4), and volatiles were evaporated. Chromatogra-
phy (EtOAc/hexanes, 2:3) of the residue gave 5 (4.99 g, 58%)
as a solidified syrup: 1H NMR δ 1.38 and 1.60 (2 × s, 2 × 3,
2 × Me), 2.47 (d, J ) 11.0 Hz, 1, OH3), 3.75-3.88 (m, 1, H3),
4.45 (t, J ) 8.6 Hz, 1, H4), 4.56 (t, J ) 4.4 Hz, 1, H2), 5.79 (d,
J ) 3.6 Hz, 1, H1), 6.42 (d, J ) 8.4 Hz, 1, H5); HRMS (CI) m/z
346.9135 (3, MH+ [C9H1381Br2O4] ) 346.9140), 344.9153 (6,
6-N-Ben zoyl-9-(5,6-d id eoxy-2,3-O-isop r op ylid en e-â-D-
r ibo-h ex-5-yn ofu r a n osyl)a d en in e (2). BuLi/hexane (1.6 M;
1.25 mL, 2 mmol) was added dropwise to a solution of 6-N-
benzoyl-9-(6,6-dibromo-5,6-dideoxy-2,3-O-isopropylidene-â-D-
ribo-hex-5-enofuranosyl)adenine1,11 (1; 282 mg, 0.5 mmol) in
THF (20 mL) at -78 °C under Ar, and stirring was continued
for 2 h (TLC indicated conversion to a more polar product and
minor fluorescent byproducts). The mixture was neutralized
(HOAc, pH ∼6) and evaporated, and the residue was parti-
tioned (NaHCO3/H2O//CHCl3). The organic layer was washed
(brine), dried (MgSO4), and evaporated. Chromatography
(hexanes/EtOAc, 1:4) of the residue gave 214 (107 mg, 53%):
1H NMR δ 1.42 and 1.62 (2 × s, 2 × 3, 2 × Me), 2.48 (d, J )
2.0 Hz, 1, H6′), 5.10 (br s, 1, H4′), 5.16 (d, J ) 5.9 Hz, 1, H3′),
5.77 (d, J ) 5.9 Hz, 1, H2′), 6.31 (s, 1, H1′), 7.48-8.10 (m, 5,
Arom), 8.35 (s, 1, H2), 8.84 (s, 1, H8), 9.30 (s, 1, NH); HRMS
(CI) m/z 406.1519 (50, MH+ [C21H20N5O4] ) 406.1515).
MH+ 81/79Br2] ) 344.9160), 342.9162 (3, MH+ [79Br2] )
[
342.9181).
Analogous treatment of the 3-O-benzoyl derivative of 422c
gave the 3-O-benzoyl derivative of 5 (71%).
5,6-Did eoxy-1,2-O-isop r op ylid en e-r-D-r ibo-h ex-5-yn o-
fu r a n ose (6). BuLi/hexane (2.5 M; 28 mL, 70 mmol) was
added dropwise to a solution of 5 (3.44 g, 10 mmoL) in dried
THF (50 mL) at -78 °C, and stirring was continued for 3 h.
The mixture was neutralized (AcOH, pH ∼6.5), concentrated
(∼10 mL, <25 °C), and partitioned (NaHCO3/H2O//CHCl3). The
aqueous layer was extracted (CHCl3, 2×), the combined organic
phase was washed (brine) and dried (MgSO4), and volatiles
were evaporated. The residue was chromatographed (CHCl3
f 2% MeOH/CHCl3) to give 6 (1.49, 81%) as a white solid: 1H
NMR δ 1.36 and 1.57 (2 × s, 2 × 3, 2 × Me), 2.51 (d, J ) 2.0
Hz, 1, H6), 2.60 (d, J ) 9.2 Hz, 1, OH3), 3.98-4.10 (m, 1, H3),
4.36 (dd, J ) 1.6, 8.6 Hz, 1, H4), 4.59 (t, J ) 4.4 Hz, 1, H2),
5.84 (d, J ) 4.0 Hz, 1, H1); HRMS (CI) m/z 185.0815 (100,
MH+ [C9H13O4] ) 185.0814).
3-O-Ben zoyl-5,6-dideoxy-1,2-O-isopr opyliden e-r-D-r ibo-
h ex-5-yn ofu r a n ose (7). Treatment of 6 (276 mg, 1.5 mmol)
with BzCl (0.3 mL, 363 mg, 2.58 mmol) at ∼0 °C for 2 h and
30 min at ambient temperature, and chromatography (as
described for 9a ) gave 7 (380 mg, 88%) as an amorphous
solid: 1H NMR δ 1.30 and 1.57 (2 × s, 2 × 3, 2 × Me), 2.54 (d,
J ) 1.8 Hz, 1, H6), 4.88 (dd, J ) 1.6, 9.0 Hz, 1, H4), 4.94-5.07
(m, 2, H2,3), 5.92 (d, J ) 3.8 Hz, 1, H1), 7.40-8.10 (m, 5,
Arom); HRMS (CI) m/z 289.1069 (100, MH+ [C16H17O5] )
289.1076).
6-Ch lor o-5,6-d id eoxy-1,2-O-isop r op ylid en e-r-D-r ibo-
h ex-5-yn ofu r a n ose (8a ). A suspension of 6 (276 mg, 1.5
mmol) in NaOCl/H2O (5.25% commercial laundry bleach, 50
mL) was stirred at ambient temperature for 16 h (the reaction
mixture became homogeneous within 30 min). The solution
was partitioned (NaHCO3/H2O//CHCl3), the organic layer was
washed (H2O, brine) and dried (MgSO4), and volatiles were
evaporated. The residue was chromatographed (CHCl3 f 1.5%
MeOH/CHCl3) to give 8a (289 mg, 87%) as a syrup: 1H NMR
δ 1.37 and 1.58 (2 × s, 2 × 3, 2 × Me), 2.57 (d, J ) 10.6 Hz, 1,
OH3), 3.95-4.07 (m, 1, H3), 4.36 (d, J ) 8.6 Hz, 1, H4), 4.57
(t, J ) 4.4 Hz, 1, H2), 5.82 (d, J ) 4.0 Hz, 1, H1); HRMS (CI)
m/z 221.0390 (10, MH+ [C9H1237ClO4] ) 221.0395), 219.0421
(36, MH+ [35Cl] ) 219.0424).
3-O-Ben zoyl-6-ch lor o-5,6-dideoxy-1,2-O-isopr opyliden e-
r-D-r ibo-h ex-5-yn ofu r a n ose (9a ). BzCl (0.2 mL, 239 mg, 1.7
mmol) was added via syringe into a solution of 8a (219 mg, 1
mmol) in dried pyridine (5 mL) at ∼0 °C (ice bath) under N2,
and stirring was continued for 4 h. NaHCO3/H2O (2 mL) was
added, stirring was continued for 10 min, and volatiles were
evaporated. The residue was partitioned (H2O/CHCl3), the
organic layer was washed (HCl/H2O, NaHCO3/H2O, brine),
dried (MgSO4), and volatiles were evaporated. The residue
was chromatographed (EtOAc/hexane, 1:4) to give 9a (264 mg,
82%) as a solidified syrup: 1H NMR δ 1.31 and 1.53 (2 × s, 2
× 3, 2 × Me), 4.87-5.04 (m, 3, H2,3,4), 5.91 (d, J ) 3.6 Hz, 1,
H1), 7.42-8.10 (m, 5, Arom); HRMS (CI) m/z 325.0677 (40,
MH+ [C16H1637ClO5] ) 325.0657), 323.0703 (100, MH+ [35Cl]
) 323.0686).
9-(5,6-Did e oxy-6-iod o-â-D-r ibo-h e x-5-yn ofu r a n osyl)-
a d en in e (3c). A solution of 2 (102 mg, 0.25 mmol) in Me2CO
(7 mL) was added dropwise to a stirred solution of AgNO3 (65
mg, 0.38 mmol) in H2O (3 mL, to which “1 drop” of diluted
NH3/H2O had been added). Separation of the silver acetylide
salt began almost immediately, and after 5 min NIS (90 mg,
0.4 mmol) was added. Stirring was continued for 30 min (the
reaction mixture became homogeneous after ∼5 min and then
became turbid again), and volatiles were evaporated. The
residue was partitioned (NaHCO3/H2O//CHCl3), and the or-
ganic layer was washed (H2O) and dried (MgSO4). Volatiles
were evaporated to give the protected iodoalkyne (∼90%) [MS
(CI) m/z 532 (10, MH+), 406 (100), 240 (45), 135 (50)]. This
material was stirred overnight with NH3/MeOH (20 mL) at
ambient temperature, and volatiles were evaporated. Chro-
matography of the residue (EtOAc f 2% MeOH/EtOAc) gave
the 2′,3′-O-isopropylidene compound (76 mg, 71% from 2): 1H
NMR (CD3OD/CDCl3, ∼4:1) δ 1.32 and 1.48 (2 × s, 2 × 3, 2 ×
Me), 5.02 (s, 1, H4′), 5.08 (d, J ) 5.5 Hz, 1, H3′), 5.71 (d, J )
5.5 Hz, 1, H2′), 6.16 (s, 1, H1′), 8.08 (s, 1, H2), 8.24 (s, 1, H8);
MS (CI) m/z 428 (80, MH+), 302 (60), 242 (70), 213 (75), 135
(100). A solution of this material (68 mg, 0.16 mmol) in TFA/
H2O (9:1, 3 mL) was stirred at ∼0 °C (ice bath) for 1 h, and
volatiles were evaporated. EtOH was added and evaporated,
and the residue was chromatographed (EtOAc f 10% MeOH/
EtOAc) and crystallized (MeOH) to give 3c (27 mg, 44%; 31%
from 2). The mother liquor was purified by RP-HPLC (pre-
parative C18 column; program 15% CH3CN/H2O for 30 min
followed by a gradient of 15 f 40% for 30 min at 2.8 mL/min;
tR ) 53 min) to give additional 3c (10 mg, 16%; 42% total from
2): mp 180-183 °C dec; UV max 259 (ꢀ 14 200), min 228 nm
1
(ꢀ 2800); H NMR (Me2SO-d6) δ 4.32 (q, J ) 4.6 Hz, 1, H3′),
4.62 (d, J ) 4.6 Hz, 1, H4′), 4.77 (q, J ) 5.1 Hz, 1 H2′), 5.66
(d, J ) 6.2 Hz, 1, OH3′), 5.69 (d, J ) 6.0 Hz, 1, OH2′), 5.87 (d,
J ) 4.8 Hz, 1, H1′), 7.35 (br s, 2, NH2), 8.14 (s, 1, H2), 8.24 (s,
1, H8); 13C NMR (Me2SO-d6) δ 15.95, 73.36, 74.68, 75.30, 87.68,
90.45, 119.45, 139.75, 149.69, 153.09, 156.09; HRMS (CI) m/z
387.9915 (100, MH+ [C11H11IN5O3] ) 387.9907). Anal. [C11H10
-
IN5O3‚0.25H2O‚0.5 EtOAc (435.7)] C, H, N. The presence of
1
0.5 equiv of EtOAc was verified by integration of the H NMR
solvent peaks.
Treatment of 2 with catalytic AgNO3 (0.125 equiv; as
described for 9b with NIS instead of NBS), and deprotection
gave 3c in similar yield. The sugar/coupling route 7 f 9c f
10c f 3c (as described for 3b with NIS instead of NBS) also
gave 3c (28% overall).
6,6-Dibr om o-5,6-dideoxy-1,2-O-isopr opyliden e-r-D-r ibo-
h ex-5-en ofu r a n ose (5). H5IO6 (6.84 g, 30 mmol) was added
to a solution of 422b (6.5 g, 25 mmol) in dried EtOAc (200 mL)
at ambient temperature, and stirring was continued for 2 h.
The mixture was filtered, the filter cake was washed (EtOAc),
and the combined filtrate was evaporated. The residue was
dissolved in dried CH2Cl2 (200 mL), and the solution was
cooled to ∼0 °C (ice bath). CBr4 (16.6 g, 50 mmol) and Ph3P
(26 g, 100 mmol) were added, and the brown solution was
3-O-Ben zoyl-6-br om o-5,6-dideoxy-1,2-O-isopr opyliden e-
r-D-r ibo-h ex-5-yn ofu r a n ose (9b). AgNO3 (25 mg, 0.15
mmol) was added to a solution of 7 (288 mg, 1 mmol) and NBS
(205 mg, 1.15 mmol) in Me2CO (10 mL) at ambient tempera-
ture, and stirring was continued for 30 min. Volatiles were
evaporated, and the residue was partitioned (H2O/CHCl3). The
aqueous layer was extracted (CHCl3), the combined organic