Biomacromolecules
Article
Circular Dichroism Spectroscopy (CD). CD spectra were
recorded using a Chirascan spectropolarimeter (Applied Photophysics,
U.K.). Solutions of the peptides and conjugates in methanol were
loaded in parallel plaque cells (Hellma quartz Suprasil), with a 0.1 or 1
mm path length. The CD data were measured using 1 s acquisition
time per point and 0.5 nm step. The postacquisition smoothing tool
from Chirascan software was used to remove random noise elements
from the averaged spectra. A residual plot was generated for each curve
in order to verify whether or not the spectrum has been distorted
during the smoothing process. The CD signal from the methanol was
subtracted from the CD data of the peptide solutions.
Small-Angle X-ray Scattering (SAXS). Experiments were
performed on beamline ID02 at the ESRF, Grenoble, France. Samples,
dissolved in methanol, were placed in a glass capillary mounted in a
brass block for temperature control. Micropumping was used to
minimize beam damage, by displacing a drop of the sample by 0.01−
0.1 mm for each exposure. The sample-to-detector distance was 1.2 m,
and the X-ray energy was 12.46 keV. The q = 4π sin θ/λ (2θ is the
scattering angle and λ is the wavelength) range was calibrated using
silver behenate. Data processing (background subtraction, radial
averaging) was performed using the software SAXSUtilities.
CO, amide I) cm−1. HighRes MS found, 1072.59785 (M + H+);
calcd, 1071.59.
1
Analysis of 2. H NMR (d-TFA, 300 MHz) δ = 7.143−7.280 (m,
20H, Har), 6.775 (s, br, NH, NH2), 4.933−4.977 (d, J = 13.2 Hz, 4H,
CHNH backbone), 4.574−4.666 (d, J = 27.6 Hz, 2H, CHNH
backbone), 4.322 (s, br, 1H, CHNH backbone), 3.077−3.359 (m,
10H, CH2N3, 14H, CH2Phe), 2.490 (s, br, 2H, CH2NH2), 1.441−
1.837 (m, 16H, CH, CH2), 0.862−1.031 (m, 12H, CH3 peptide side
chains) ppm. 13C NMR (d-TFA, 300 MHz) δ = 181.05 (COOH),
178.54 (NHCO−), 176.12 (NHCO−), 175.43 (NHCO−), 175.12
(NHCO−), 136.57 (Car-CH2), 131.20 (Car, Car-CH2), 129.92 (Car-
CH2), 120.15 (Car), 118.62 (Car), 115.07 (Car), 112.36 (Car), 18−
62.27 (CH3, CH2, CH, 26C) ppm. MS (ESI+) m/z = 1072.80 (M +
H+, 100). IR (ATR FT-IR) ν = 3420 (m, NH-H), 2113 (w, N3), 1681
(s, CO, amide I), 1629 (m, CO, amide I) cm−1. HighRes MS
found, 925.52944 (M + H+); calcd, 924.52.
Synthesis of 5-Azido Pentanoic Acid 3. The synthesis of the
C4N3 linker followed a procedure from Srinivasan40 and Kakwere.33
Under inert conditions, bromovaleric acid (40 mmol, 7.24 g) was
dissolved in 8 mL of MeOH and cooled down to 0 °C. Thionyl
chloride (120 mmol, 14.27 g) was added dropwise under a N2
atmosphere within 45 min and stirred for 30 min at 0 °C. The
reaction mixture was allowed to warm up to room temperature and
was stirred for 19 h. After solvent evaporation, the residue was
suspended in 50 mL of ethyl acetate and extracted with NaHCO3 (3 ×
30 mL), H2O (3 × 30 mL), and brine (1 × 30 mL). Drying over
NaSO4 and removing the solvent under reduced pressure lead to a
brown liquid.
General Procedure for the Synthesis of Peptides 1 and 2.
The azide modified peptides N3C4−FVLKFF (1) and N3C4−
FFVLKFF (2) have been synthesized via standard solid-phase 9-
fluorenylmethoxycarbonyl (Fmoc) peptide synthesis on a 2-chloro-
trityl resin. A total of 2 g (1.5 mmol g−1) 2-chlorotrityl resin was
suspended in 5 mL DCM for 30 min in a fritted syringe (10 mL). After
the solvent has been filtered off, a solution of Fmoc-L-phenylalanine−
OH (6.0 mmol, 2.322 g) and N,N-diisopropylethylamine (DIPEA,
Upon addition of 30 mL of DMSO, NaN3 (77 mmol, 5 g) was
added under rapid stirring. This solution has been stirred at 50 °C for
24 h and the resultant white suspension has been taken up with 20 mL
H2O and was extracted with Et2O (4 × 40 mL). Washing with brine,
drying over NaSO4 and removing the solvent under reduced pressure
yielded in a brown oil. After dissolving in 30 mL of THF/H2O = 3:1
(v/v), 20 mL of aqueous LiOH (73 mmol) was added and the mixture
was stirred for 4 h at room temperature. THF was removed under
reduced pressure and the aqueous phase was combined with 50 mL of
ethyl acetate. Washing with 1 N HCl (3 × 50 mL), H2O (3 × 50 mL),
and brine (2 × 50 mL) and drying the combined organic phases over
NaSO4 and removing the solvent under reduced pressure yielded in 5
as brown oil (70.1%, 4.01 g).
Hunig’s Base; 12 mmol, 3.08 g) in DMF (5 mL) was added and
̈
shaken for 2 h. The solvent was filtered off and the resin was washed
with DCM/MeOH/DIPEA 17:2:1 (3 × 10 mL) to cap any unreacted
peptide chains. After washing the resin with DCM (3 × 10 mL), DMF
(3 × 10 mL), and DCM (3 × 10 mL), it was dried in vacuum to be
used for further SPPS. UV−vis was used to determine a loading of 1.06
mmol Fmoc-L-phenylalanin−OH per g of resin. A total of 0.5 g resin
was used for further SPPS. For coupling of each Fmoc-protected L-
amino acid, the resin was swollen in 5 mL of DCM for 30 min and
deprotected with 20% solution piperidin in DMF (2 × 5 mL) for 3
min. After washing the resin with DMF (3 × 10 mL), DCM (3 × 10
mL), and DMF (3 × 10 mL), a solution of Fmoc-L-amino acid−OH
(1.5 equiv), HBTU (2 equiv) to activate the N-terminus, and DIPEA
(5 equiv) in DMF (5 mL) was added and shaken overnight (16 h).
The solvent was filtered off and the resin washed with DMF (5 × 10
mL) and unreacted chains capped with DCM/MeOH/DIPEA 17:2:1
(3 × 10 mL) for 2 × 3 min. After washing with DMF (5 × 10 mL), the
next coupling step was performed. Upon addition of the last amino
acid, the azide linker C4N3 3, was coupled under the same reaction
conditions. A mixture of TFA/thioanisol/triisopropylsilane: H2O =
88:5:2:5 (10 mL for 3 h) was used to isolate the desired peptide
sequences 1 and 2 from the solid phase. The obtained solution was
concentrated to near dryness, dissolved in a small amount of MeOH
and precipitated from ice-cold Et2O. If necessary, preparative HPLC
(ACN, H2O, TFA) was performed for purification. Drying in vacuum
yielded the opaque solids 1 and 2 (0.127 g, 41%).
1H NMR (CDCl3, 300 MHz) δ = 11.442 (s, 1H, OH), 3.233−3.276
(t, J = 12.9 MHz, 6.6 MHz, 2H, CH2N3), 2.328−2.375 (t, J = 14.1
MHz, 6.9 MHz, 2H, CH2(CH2)3N3), 1.547−1.726 (m, 4H,
CH2CH2N3) ppm. 1H NMR data are in agreement with literature
results.33
Synthesis of (Prop-2-ynyl propanoate)yl Butyltrithiocarbon-
ate (PPBTC, 4). The alkyne-modified RAFT agent PPBTC 4 was
synthesized as described by Konkolewicz et al.41 Butyltrithiocarbonate
propanoic acid (BTCPA; 2.06 g, 8.60 mmol) was dissolved in 50 mL
DCM and cooled down to 0 °C. Propargyl alcohol (2.42 g, 23.02
mmol), EDCI (3.02 g, 12.62 mmol), and DMAP (0.13 g, 1.1 mmol)
was added and stirred at 0 °C for 2 h. The reaction mixture was
allowed to warm up to room temperature and was stirred for
additional 16 h. Washing with H2O (5 × 20 mL), drying over MgSO4,
and removing the solvents yielded a yellow oil. Purification was
achieved via passing over a silica pad using toluene/ethyl acetate 9:1.
Removing solvents and drying in vacuum gave the desired product 4 as
1
Analysis of 1. H NMR (d-TFA, 300 MHz) δ = 7.223−7.393 (m,
15H, Har), 6.860 (s, br, NH, NH2), 4.994−5.060 (d, 3H, 19.8 Hz,
CHNH backbone), 4.668−4.745 (d, J = 23.1 Hz, 2H, CHNH
backbone), 4.467 (s, br, 1H, CHNH backbone), 3.442 (s, br, 2H,
CH2N3), 3.176−3.324 (d, br, J = 44.4 Hz, 6H, CH2Phe), 2.597 (s, br,
2H, CH2NH2), 2.144−2.212 (m, 3H, COCH2-, CH(CH3)2CH),
1.379−2.024 (m, br, 13H, CH2CH2N3, CH2CH2CH2N3,
CH2CH2CH2NH2, CH2CH2NH2, CH2(CH2)3NH2, CH2(CH(CH3)2),
CH(CH3)2CH2), 1.056−1.119 (m, br, 12H, CH3 peptide side chains)
ppm.
1
yellow oil (91.7%, 2.16 g). H NMR (CDCl3, 300 MHz) δ = 4.802−
4.876 (q, J = 7.5 Hz, 1H, SCHCH3CO), 4.726 (t, J = 1.2 Hz, 2H,
CH2CCH), 3.30−3.379 (t, J = 7.2 Hz, 2H, CH3(CH2)2CH2S-), 2.482−
2.498 (t, J = 2.4 Hz, 1H, CH2CCH), 1.595−1.725 (m, 5H,
CH3CH2CH2CH2S-, SCHCH3CO), 1.385−1.484 (m, 2H,
CH3CH2(CH2)2S-), 0.901−0.949 (t, J = 7.2 Hz, 3H, CH3(CH2)3S-).
Data are in agreement with results previously reported by Konkolewicz
et al.41
13C NMR (d-TFA, 400 MHz) δ = 178 (COOH), 177 (NHCO−),
175 (NHCO−), 136 (Car-CH2), 131 (Car, Car-CH2), 129 (Car-CH2),
120 (Car), 118 (Car), 116 (Car), 113 (Car), 19.5−62.5 (CH3, CH2, CH,
24C) ppm. MS (ESI+) m/z = 925.25 (M+H+, 100). IR (ATR FT-IR) ν
= 3282 (m, NH-H), 2153 (w, N3), 1679 (s, CO, amide I), 1631 (m,
General Procedure for the Synthesis of Polymers. The RAFT
polymers were prepared according to a procedure previously reported
by our group.34,41,42 A mixture of monomer, removed from inhibitors,
AIBN (AIBN/RAFT = 0.1:1 equiv) and solvents were added. The
2741
dx.doi.org/10.1021/bm3007117 | Biomacromolecules 2012, 13, 2739−2747