M. Tremblay et al. / Bioorg. Med. Chem. Lett. 22 (2012) 7512–7517
7517
10. The assay wall corresponds to the minimal measured IC50 value and usually
can be approximated by half target protein concentration.
References and notes
11. Reacti-Bind Neutravidin Coated Black 384-Well plates (Pierce Cat# 15402)
1. UNAIDS/WHO ‘‘AIDS Epidemic Update 2009’’, November 2009, Geneva. http://
May 2012).
were first washed with 80
NaCl; 10 ZnSO4; 0.0025% CHAPS (w/v); 50
Immobilization of a 50-end biotin labeled (TG)25 oligonucleotide (Integrated
DNA Technology Inc.) was then carried out by adding 50 l/well of a 25 nM
solution of oligonucleotide in Buffer A + 5 mg/ml BSA and incubating
overnight. Unbound material was removed by two 80 l/well washes with
Buffer A. Assembly reactions were performed in 60 l/well reactions
comprising 100 nM of 50-end fluorescein labeled (TG)25 oligonucleotide
(Integrated DNA Technology Inc.) and 2 M of CA–NC protein, using Buffer A.
Assembly reactions were incubated for 2 h at room temperature and non-
immobilized material was removed by washing 80 l/well with Buffer A. Test
compounds, serially diluted in Buffer A + 0.125% DMSO, were added to the
wells (60 l/well) and incubated at room temperature for 2 h. Disassembled
material was removed by two successive 80 l/well washes with Buffer A.
Finally, 80 l/well of Buffer A + 0.1% SDS was added and incubated for 15
l
l/well of Buffer A (50 mM Tris pH 8.0; 350 mM
l
M
l
g/ml BSA; 1 mM DTT).
2. For
a recent review about the impact of antiretroviral therapy on HIV
l
pandemic, see: Broder, S. Antiviral Res. 2010, 85, 1.
3. (a) Adamson, C. S.; Freed, E. O. Antiviral Res. 2010, 85, 119; (b) Flexner, C. Nat.
Rev. Drug Disc. 2007, 6, 959.
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4. (a) Neira, J. L. FEBS J. 2009, 276, 6110; (b) Zhang, J.; Liu, X.; De Clercq, E. Mini-
Rev. Med. Chem. 2009, 9, 510; (c) Adamson, C. S.; Salzwedel, K.; Freed, E. O.
Expert Opin. Ther. Targets 2009, 13, 895; (d) Ganser-Pornillos, B. K.; Yeager, M.;
Sundquist, W. I. Curr. Opin. Struct. Biol. 2008, 18, 203.
5. (a) Ganser-Pornillos, B. K.; von Schwedler, U. K.; Stray, K. M.; Aiken, C.;
Sundquist, W. I. J. Virol 2004, 78, 2545; (b) von Schwedler, U. K.; Stray, K. M.;
Garrus, J. E.; Sundquist, W. I. J. Virol 2003, 77, 5439; (c) Forshey, B. M.; von
Schwedler, U.; Sundquist, W. I.; Aiken, C. J. Virol 2002, 76, 5667.
6. (a) Pornillos, O.; Ganser-Pornillos, B. K.; Yeager, M. Nature 2011, 469, 424; (b)
Pornillos, O.; Ganser-Pornillos, B. K.; Kelly, B. N.; Hua, Y.; Whitby, F. G.; Stout, C.
D.; Sundquist, W. I.; Hill, C. P.; Yeager, M. Cell 2009, 137, 1282; (c) Ganser-
Pornillos, B. K.; Yeager, M.; Sundquist, W. I. Curr. Opin. Struct. Biol. 2008, 18, 203.
7. Sundquist, W. I.; Wang, H.; Hill, C. P.; Stemmler, T. L.; Davis, D. R.; Alam, S. PCT
Int. Appl. WO 2003013425, 2003.
8. (a) Lemke, C. T.; Titolo, S.; von Schwedler, U.; Goudreau, N.; Mercier, J.-F.;
Wardrop, E.; Faucher, A.-M.; Coulombe, R.; Banik, S.; Fader, L. D.; Gagnon, A.;
Kawai, S.; Rancourt, J.; Tremblay, M.; Yoakim, C.; Simoneau, B.; Archambault, J.;
Sundquist, W. I.; Mason, S. W. J. Virol 2012, 86, 6643; (b) Fader, L. D.; Bethell, R.;
Bonneau, P.; Bös, M.; Bousquet, Y.; Cordingley, M. G.; Coulombe, R.; DeRoy, P.;
Faucher, A.-M.; Gagnon, A.; Kawai, S. H.; Lacoste, J.-E.; Landry, S.; Lemke, C. T.;
Malenfant, E.; Morin, S.; O’Meara, J.; Simoneau, B.; Yoakim, C. Bioorg. Med.
Chem. 2011, 21, 398; (c) Tian, B.; He, M.; Tan, Z.; Tang, S.; Hewlett, I.; Chen, S.;
Jin, Y.; Yang, M. Chem. Biol. Drug Des. 2011, 77, 189; (d) Shi, J.; Zhou, J.; Shah, V.
B.; Aiken, C.; Whitby, K. J. Virol 2011, 85, 542; (e) Blair, W. S.; Pickford, C.; Irving,
S. L.; Brown, D. G.; Anderson, M.; Bazin, R.; Cao, J.; Ciaramella, G.; Isaacson, J.;
Jackson, L.; Hunt, R.; Kjerrstrom, A.; Nieman, J. A.; Patick, A. K.; Perros, M.; Scott,
A. D.; Whitby, K.; Wu, H.; Butler, S. L. PLoS Pathog. 2010, 6, e1001220; (f) Li, J.;
Tan, Z.; Tang, S.; Hewlett, I.; Pang, R.; He, M.; He, S.; Tian, B.; Chen, K.; Yang, M.
Bioorg. Med. Chem. 2009, 17, 3177; (g) Kelly, B. N.; Kyere, S.; Kinde, I.; Tang, C.;
Howard, B. R.; Robinson, H.; Sundquist, W. I.; Summers, M. F.; Hill, C. P. J. Mol.
Biol. 2007, 373, 355; (h) Prevelige, P. WO 2007048042, 2007.; (i) Sticht, J.;
Humbert, M.; Findlow, S.; Bodem, J.; Muller, B.; Dietrich, U.; Werner, J.;
Krausslich, H. G. Nat. Struct. Mol. Biol. 2005, 12, 671; (j) Ternois, F.; Sticht, J.;
Duquerroy, S.; Krausslich, H. G.; Rey, F. A. Nat. Struct. Mol. Biol. 2005, 12, 678;
(k) Tang, C.; Loeliger, E.; Kinde, I.; Kyere, S.; Mayo, K.; Barklis, E.; Sun, Y.; Huang,
M.; Summers, M. F. J. Mol. Biol. 2003, 327, 1013.
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l
minutes prior to quantification of captured fluorescence on a Victor plate
reader (Perkin Elmer Life Sciences) equipped with fluorescein excitation and
emission filters. The capacity of a test compound to dissociate assembled
complexes was considered proportional to the observed loss of captured
fluorescence. The IC50 values for each compound were generated by fitting
disassembly curves from ten-point dilution series to the following equation:
n
n
%inhibitionððInmax ꢂ ½Iꢃ Þ ꢄ ð½Iꢃ þ ICn50ÞÞ ꢂ 100, and represent the concentration
of compound required for 50% disassembly.
12. Cytotoxicity concentration (CC50) is defined as the concentration resulting in
the death of 50 percent of the host cells and antiviral potency (EC50) as the
concentration inhibiting virus replication by 50 percent.
13. All the compounds described have a cytotoxicity window (or selectivity index)
greater than 5.
14. Beaulieu, P. L.; Haché, B.; von Moos, E. Synthesis 2003, 1683.
15. Serial dilutions of test compounds in FP buffer (50 mM Tris pH 8.0; 100 mM
NaCl; 0.0025% CHAPS; 1 mM DTT) + 2% DMSO were added (40
384-well black non-binding polystyrene plate. Reactions were completed by
adding 40 l of a solution containing CA–NC protein (40 nM) and fluorescein-
ll) to a Corning
l
labeled probe linked onto the carboxylate of 33 (40 nM) in FP buffer. Plates
were incubated for 15 minutes prior to reading on a Victor plate reader (Perkin
Elmer Life Sciences) using a fluorescence polarization protocol for fluorescein.
Control wells (absence of test compound) and blank wells (only probe) were
included on each plate, representing 0% and 100% displacement, respectively.
The IC50 values for each compound were generated by fitting displacement
curves from ten-point dilution series to the following equation:
n
n
%inhibitionððInmax ꢂ ½Iꢃ Þ ꢄ ð½Iꢃ þ ICn50ÞÞ ꢂ 100, and represent the concentration
of compound required for 50% displacement of the probe.
16. Protein Data Bank (PDB) ID:4E92.
9. Yoakim, C.; DeRoy, P.; Duplessis, M.; Gagnon, A.; Goulet, S.; Hücke, O.; Lemke,
C.; Surprenant, S. PCT Int. Appl. WO 2008/067644, 2008.