.
Angewandte
Communications
DOI: 10.1002/anie.201207456
Natural Products
Homologous NRPS-like Gene Clusters Mediate Redundant Small-
Molecule Biosynthesis in Aspergillus flavus**
Ry R. Forseth, Saori Amaike, Daniel Schwenk, Katharyn J. Affeldt, Dirk Hoffmeister,
Frank C. Schroeder,* and Nancy P. Keller*
Fungi are among the most prolific sources of pharmacolog-
ically relevant natural products.[1] This large diversity of
fungal small molecules serves important functions in fungal
ecology, for example as virulence factors and as chemical
defense agents. However, only a fraction of the biosynthetic
capabilities suggested by genomic analyses has been observed
under laboratory conditions, because expression of many,
perhaps even most biosynthetic pathways depends strongly
on environmental conditions.[2] Here we demonstrate the use
of comparative metabolomics[3] for the analysis of knock-out,
overexpression, and knock-down strains to identify metabo-
lites derived from two nonribosomal peptide synthetase
(NRPS) gene clusters in the aflatoxin-producing ascomycete
Aspergillus flavus, a crop contaminant[4] and opportunistic
pathogen that causes aspergillosis in immunocompromised
humans.[5]
Although the A. flavus genome encodes at least 25
polyketide synthase (PKS), 18 NRPS, and two hybrid
NRPS-PKS gene clusters,[6] assignments have been made for
only four metabolites.[7] Many A. flavus secondary-metabolite
pathways are under the control of the nuclear protein LaeA,
a global regulator of morphogenesis and virulence factor in
A. flavus and other pathogenic fungi.[8] Two LaeA-regulated
clusters, which were named lna and lnb, exhibit a striking level
of genetic similarity (Figure 1a, Table S1). The lna and lnb
clusters contain two noncanonical NRPS genes with high
sequence homology (58% identical at the amino acid level),
lnaA and lnbA, respectively, which are accompanied by
matching sets of genes likely coding for tailoring enzymes. lna
and lnb are orphan clusters that have no known associated
metabolites and belong to a family of noncanonical NRPS
genes that consist of an adenylation (A) domain, a peptidyl
carrier protein (PCP) domain, and a thioester reductase (R)
domain, but lack a canonical condensation (C) domain
(Figure 1a). The functions of this unusual family of NRPSs,
which share homology to reductases participating in the
biosynthesis of l-lysine in fungi,[9] have not been explored.
We here demonstrate that the lna and lnb clusters encode sets
of enzymes that produce overlapping sets of previously
undescribed metabolites, and show that one primary function
of the noncanonical NRPSs LnaA and LnbA likely consists in
the reduction of l-tyrosine. Furthermore, the lna and lnb
biosynthetic pathways appear to be part of a signaling
network that controls the formation of sclerotia, a resilient
overwintering structure.
To identify lna-associated metabolites by means of com-
parative metabolomics, we created deletion and overexpres-
sion[10] mutants of the NRPS gene lnaA (DlnaA and
OE::lnaA, respectively) as well as double-mutant strains
DlnaA, KD::lnbA and OE::lnaA, KD::lnaB, where KD
indicates a knock-down of gene expression using RNAi
(strains are listed in Table S3; for methods, see the Supporting
Information, Section 1). Unexpectedly, we noted that in the
DlnaA, KD::lnbA double-mutant strain, in which both the lna
and lnb pathways are disrupted, formation of sclerotia was
strongly suppressed relative to the wild-type(WT; see the
Supporting Information, Figure S1).
The WT, DlnaA, and OE::lnaA metabolomes were
compared using differential analysis by 2D NMR spectrosco-
py (DANS) as described previously.[3b–d] Comparison of the
OE::lnaA spectra with either WT or DlnaA revealed a large
number of spin systems present only in the OE::lnaA spectra
(see Figure S2). Available structure databases indicated that
most of the OE::lnaA-specific signals did not correspond to
[*] R. R. Forseth,[+] Prof. Dr. F. C. Schroeder
Boyce Thompson Institute and Department of Chemistry and
Chemical Biology, Cornell University
D. Schwenk, Prof. Dr. D. Hoffmeister
Department of Pharmaceutical Biology, Hans Knçll Institute
Friedrich Schiller Universitꢀt
1 Tower Road, Ithaca, NY 14850 (USA)
E-mail: fs31@cornell.edu
Beutenbergstrasse 11a, 07745 Jena (Germany)
[+] These authors contributed equally to this work.
[**] We thank J. A. Baccile, Y. Rokhlenko, and J. A. Bernstein for
assistance with synthesis and M. Kukula for help with mass
spectrometry. Support from the U.S. National Institutes of Health
(GM008500 to R.R.F. and GM084077 to N.P.K.), the International
Leibniz Research School Jena (to D.S.), DuPont Corp. (to F.C.S.),
the U.S. Department of Agriculture (WIS01200 to N.P.K.), and the
Food Research Institute, National Science Foundation subagree-
ment (IOS-0965649 to N.P.K) is gratefully acknowledged.
K. J. Affeldt, Prof. Dr. N. P. Keller
Department of Medical Microbiology and Immunology
University of Wisconsin-Madison
3476 Microbial Sciences Building, Madison, WI 53706 (USA)
E-mail: npkeller@wisc.edu
Dr. S. Amaike[+]
Department of Plant Pathology
University of Wisconsin-Madison (USA)
Supporting information for this article is available on the WWW
Prof. Dr. N. P. Keller
Department of Bacteriology
University of Wisconsin-Madison (USA)
1590
ꢀ 2013 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
Angew. Chem. Int. Ed. 2013, 52, 1590 –1594