Journal of Medicinal Chemistry
Article
MHz, DMSO-d6): δ 11.73 (s, 1H), 7.79 (s, 4H), 7.63 (d, J = 1.5 Hz,
1H), 7.38 (d, J = 8.5 Hz, 1H), 7.20 (dd, J = 8.0 Hz, 1.5 Hz, 1H), 4.19
(q, J = 7.0 Hz, 2H), 3.83 (t, J = 6.0 Hz, 2H), 3.35 (t, J = 6.0 Hz, 2H),
1.27 (t, J = 6.5 Hz, 3H). Mass spectrum m/z 397.09 [M + H]+
5-Chloro-3-ethyl-1H-indole-2-carboxylic Acid (16a). To a
solution of 15a (330 mg, 1.31 mmol) in 30 mL of dioxane was
added a solution of KOH (440 mg, 7.7 mol) in 3 mL of water, and the
resulting solution was refluxed for 2 h. It was then cooled to room
temperature, concentrated under reduced pressure, and neutralized by
addition of 1 N hydrochloric acid. The precipitated acid was filtered,
washed with cold water, and air-dried to give pure acid 16a (306 mg,
98% yield) as white solid. 1H NMR (500 MHz, DMSO-d6): δ 13.04 (s,
1H), 11.57 (s, 1H,), 7.71 (s, 1H), 7.40 (d, J = 9.0 Hz, 1H), 7.23 (dd, J
= 9.0 Hz, 2.0 Hz, 1H), 3.03 (q, J = 7.5 Hz, 2H), 1.16 (t, J = 7.5 Hz,
3H). Mass spectrum m/z 224.04 [M + H]+.
3-Ethyl-5-nitro-1H-indole-2-carboxylic Acid (16b). The com-
pound was synthesized as per the procedure for 16a, as a solid (72%
yield). 1H NMR (400 MHz, DMSO-d6): δ 12.14 (s, 1H), 8.67 (d, J =
2.0 Hz, 1H), 8.11 (dd, J = 8.8 Hz, 2.5 Hz, 1H), 7.54 (d, J = 8.8 Hz,
1H), 3.12 (q, J = 8.0 Hz, 2H), 1.22 (t, J = 7.6 Hz, 3H). Mass spectrum
m/z 235.06 [M + H]+.
3-Ethyl-5-nitro-N-[4-(piperidin-1-yl) phenethyl]-1H-indole-2-
carboxamide (17). The compound was synthesized as per the
procedure for 1, as a solid (82% yield). Rf = 0.7 (EtOAc/hexanes =
50/50). 1H NMR (500 MHz, chloroform-d): δ 9.97 (s, 1H), 8.58 (d, J
= 2.0 Hz, 1H), 8.16 (dd, J = 9.5 Hz, J = 2.0 Hz, 1H), 7.44 (d, J = 9.5
Hz, 1H), 7.15 (d, J = 8.5 Hz, 2H), 6.93 (d, J = 8.5 Hz, 2H), 6.18−6.07
(m, 1H), 3.82 (q, J = 6.0 Hz, 2H), 3.14 (t, J = 5.5 Hz, 4H), 2.91 (t, J =
7.0 Hz, 2H), 2.79 (q, J = 7.5 Hz, 2H), 1.76−1.68 (m, 4H), 1.62−1.54
(m, 2H), 1.13 (t, J = 7.5 Hz, 3H). Mass spectrum m/z 421.22 [M +
H]+.
temperature for 15 min. It was quenched with cold water and extracted
with dichloromethane (3×), and the combined organic layer was
washed with brine, dried on Na2SO4, and evaporated under vacuum.
The resultant residue was purified on silica gel (5%−25%;
EtOAc:hexanes) to give pure compound 20 (388 mg, 87% yield). Rf
1
= 0.35 (EtOAc/hexanes = 20/80). H NMR (400 MHz, chloroform-
d): δ 9.79 (s, 1H), 7.46 (s, 1H), 7.35 (d, J = 8.8 Hz, 1H), 7.17−7.09
(m, 3H, especially 7.14, d, J = 8.0 Hz, 2H), 6.92 (d, J = 8.0 Hz, 2H),
6.03 (br t, J = 6.4 Hz, 1H), 3.80 (q, J = 6.0 Hz, 2H), 3.13 (br t, J = 5.6
Hz, 4H), 2.90 (t, J = 6.4 Hz, 2H), 2.70 (q, J = 7.6 Hz, 2H), 1.76−1.67
(m, 4H), 1.62−1.54 (m, 2H), 1.08 (t, J = 7.6 Hz, 3H). Mass spectrum
m/z 433.21 [M + H]+.
3-(2-Aminoethyl)-5-chloro-1H-indole-2-carboxylic Acid (21).
To a solution of 15c (10.0 g, 25.2 mmol) in 200 mL of ethanol was
added ethanolamine (3.08 g, 50.4 mmol), and the reaction mixture was
refluxed for 14 h. It was then cooled to room temperature, volatiles
were removed under vacuum, and the mixture was partitioned in ethyl
acetate and water. The organic layer was separated, the aqueous layer
was extracted with ethyl acetate (3×), and the combined organic layer
was washed with brine and dried over Na2SO4. The solvent was
removed under vacuum to give the lactam intermediate as a pure white
1
solid (4.9 mg, 88% yield). Rf = 0.2 (EtOAc/hexanes = 50/50). H
NMR (500 MHz, DMSO-d ) δ 11.81 (s, 1H), 7.68 (d, J = 2.0 Hz,
6
1H), 7.66 (s, 1H), 7.39 (d, J = 9.0 Hz, 1H), 7.21 (dd, J = 7.0 Hz, 1.5
Hz, 1H), 3.54 (t, J = 4.0 Hz, 2H), 2.92 (t, J = 4.0 Hz, 2H). Mass
spectrum m/z 221.04 [M + H]+.
To this intermediate (4.5 g, 20.39 mmol) in 100 mL of
dioxane:H2O (4:1) was added KOH (6.87 g, 122.0 mmol) in excess,
and the mixture was refluxed overnight. It was then cooled to room
temperature, and the volatiles were removed under vacuum. The
residue was diluted with ice cold water and acidified to pH 5 with
concd hydrochloric acid to give a precipitate which was filtered and air-
dried to give the desired 21 as a white solid. (4.77 g, 98% yield). Rf =
5-Amino-3-ethyl-N-[4-(piperidin-1-yl)phenethyl]-1H-indole-
2-carboxamide (18). To a solution of 17 (600 mg, 1.43 mmol) in 30
mL of anhydrous THF and anhydrous methanol (13:1) was added
NiCl2·6H2O (356 mg, 1.49 mmol) under an argon atmosphere, and
reaction mixture was stirred at room temperature for 45 min. The
mixture was then cooled to −5 °C to which was added NaBH4 (324
mg, 8.56 mmol) portionwise, and the reaction was gradually warmed
to room temperature while stirring for 1 h. Reaction was quenched
with saturated NH4Cl and concentrated under reduced pressure. The
residue was diluted with ethyl acetate and water and filtered, the
organic layer was separated, and the aqueous layer was extracted with
ethyl acetate (3×). The combined organic layer was washed with water
and brine, dried (Na2SO4), and evaporated under vacuum to yield 18
1
0.15 (MeOH/DCM = 20/80). H NMR (500 MHz, DMSO-d6) δ
11.19 (s, 1H), 8.79 (br s, 3H), 7.62 (d, J = 2.0 Hz, 1H), 7.33 (d, J = 8.5
Hz, 1H), 7.08 (dd, J = 8.5 Hz, J = 2.0 Hz, 1H), 3.18 (t, J = 6.0 Hz,
2H), 3.01 (t, J = 6.0 Hz, 2H). Mass spectrum m/z 239.05 (M + H)+.
3-(2-((tert-Butoxycarbonyl)amino)ethyl)-5-chloro-1H-indole-
2-carboxylic Acid (22). To a solution of 21 (4.0 g, 16.76 mmol) in
80 mL of THF was added Boc anhydride (3.84 g, 17.60 mmol) at 0
°C. To this were added 50 mL of aq saturated NaHCO3 solution and
water (2:1), and the reaction mixture was stirred at 0 °C for 3 h and
then allowed to warm up to room temperature and stirred for 24 h.
Solvent was then removed under vacuum, ice cold water was added to
the residue, and it was acidified to pH 5 with cold 5% aq hydrochloric
acid. The resultant precipitate was filtered, and the residue was washed
with cold water and air-dried to give crude product as a cream colored
solid which was recrystallized in methanol to give pure desired product
1
(479 mg, 86% yield). Rf = 0.8 (MeOH/DCM = 20/80). H NMR
(500 MHz, DMSO-d6): δ 10.60 (s, 1H), 7.74 (t, J = 5.5 Hz, 1H), 7.08
(d, J = 9.0 Hz, 3H), 6.85 (d, J = 9.0 Hz, 2H), 6.69 (d, J = 2.0 Hz, 1H),
6.62 (dd, J = 9.0 Hz, 2.0 Hz, 1H), 4.56 (br s, 2H), 3.44 (q, J = 6.5 Hz,
2H), 3.06 (t, J = 5.5 Hz, 4H), 2.90 (q, J = 7.5 Hz, 2H), 2.74 (t, J = 7.5
Hz, 2H), 1.64−1.56 (m, 4H), 1.54−1.46 (m, 2H), 1.11 (t, J = 7.5 Hz,
3H). Mass spectrum m/z 390.24 [M + H]+.
5-Azido-3-ethyl-N-[4-(piperidin-1-yl)phenethyl]-1H-indole-
2-carboxamide (19). To a solution of 18 (400 mg, 1.10 mmol) in 40
mL of THF under argon atmosphere was added tert-butyl nitrite (1.6
g, 15.5 mmol) and TMSN3 (1.2 g, 10.42 mmol), and the reaction was
stirred overnight at room temperature. Solvent was evaporated under
reduced pressure to give crude product which was purified using flash
column chromatography on silica gel (10%−40%; EtOAc:hexanes) to
yield pure 19 as a brown solid (180 mg, 42.0% yield). Rf = 0.81
(MeOH/DCM = 20/80). 1H NMR (500 MHz, chloroform-d): δ 9.14
(s, 1H), 7.35 (d, J = 9.0 Hz, 1H), 7.20 (d, J = 2.0 Hz, 1H), 7.14 (d, J =
9.0 Hz, 2H), 6.95 (dd, J = 9.0 Hz, J = 2.0 Hz, 1H), 6.92 (d, J = 9.0 Hz,
2H), 5.98 (br t, J = 6.0 Hz, 1H,), 3.78 (q, J = 6.5 Hz, 2H), 3.13 (t, J =
5.5 Hz, 4H), 2.89 (t, J = 6.5 Hz, 2H), 2.70 (q, J = 8.0 Hz, 2H), 1.75−
1.68 (m, 4H), 1.64−1.54 (m, 2H), 1.08 (t, J = 8.0 Hz, 3H). Mass
spectrum m/z 417.23 [M + H]+.
1
22 (5.0 g, 88% yield). Rf = 0.25 (MeOH/DCM = 10/90). H NMR
(500 MHz, DMSO-d6) δ 11.59 (s, 1H), 7.68 (s, 1H), 7.39 (d, J = 8.5
Hz, 1H), 7.20 (dd, J = 8.5 Hz, J = 1.5 Hz, 1H), 6.87 (t as br s, 1H),
3.16 (t, J = 8.5 Hz, 2H), 3.15 (t, J = 8.5 Hz, 2H), 1.31 (s, 9H). Mass
spectrum m/z 339.11 [M + H]+.
tert-Butyl (2-(5-Chloro-2-((4-(piperidin-1-yl)phenethyl)-
carbamoyl)-1H-indol-3-yl)ethyl)carbamate (23). The compound
was synthesized by coupling 22 with 8 as per the procedure for 1, as a
white solid (68% yield). Rf = 0.8 (EtOAc/hexanes = 50/50). 1H NMR
(500 MHz, chloroform-d) δ 9.39 (s, 1H), 7.64 (s, 1H), 7.54 (d, J = 2.0
Hz, 1H), 7.32 (d, J = 8.5 Hz, 1H), 7.21 (dd, J = 8.5 Hz, 2.0 Hz, 1H),
7.15 (d, J = 8.0 Hz, 2H), 6.88 (d, J = 8.5 Hz, 2H), 4.92 (br s, 1H), 3.75
(dd, J = 15.5 Hz, 6.5 Hz, 2H), 3.21 (dd, J = 16.0 Hz, 6.0 Hz, 2H), 3.11
(t, J = 6.0 Hz, 4H), 3.09−3.03 (m, 2H), 2.95 (t, J = 8.0 Hz, 2H), 1.70
(quint, J = 5.5 Hz, 4H), 1.58−1.54 (m, 2H), 1.49 (s, 9H). Mass
spectrum m/z 526.25 [M + H]+.
3-(2-Aminoethyl)-5-chloro-N-(4-(piperidin-1-yl)phenethyl)-
1H-indole-2-carboxamide (24). To 100 mL of CH2Cl2 was added
23 (2.0 g, 3.81 mmol) followed by dropwise addition of 10 mL of
TFA, and the reaction was stirred at room temperature for 3 h.
Volatiles were then removed under vacuum, and the crude product
was washed with saturated NaHCO3 and extracted in dichloromethane
3-Ethyl-5-isothiocyanato-N-[4-(piperidin-1-yl)phenethyl]-
1H-indole-2-carboxamide (20). To a solution of 18 (400 mg, 1.10
mmol) in 5 mL of CH2Cl2 was added di(2-pyridyl) thionocarbonate
(308 mg, 1.32 mmol), and the reaction mixture was stirred at room
M
J. Med. Chem. XXXX, XXX, XXX−XXX