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R. J. Bergeron et al.
PAPER
orated in vacuo. Chromatography on silica gel eluting with 0.5%
NH4OH–MeOH gave 6.70 g (99%) of 2 as a viscous oil.
1H NMR (CD3OD): d = 1.25–1.33 (m, 6 H), 1.79–2.02 (m, 4 H),
3.29–4.32 (m, 12 H), 6.70–6.76 (m, 1 H), 6.92–6.95 (m, 1 H), 7.21–
7.26 (m, 1 H).
13C NMR (CD3OD): d = 20.2, 20.4, 28.2, 29.6, 37.9, 38.1, 44.8,
46.9, 56.8, 60.4, 67.4, 67.8, 116.7, 118.8, 119.6, 119.7, 147.3,
150.1, 168.6, 168.8, 171.6.
1H NMR: d = 1.43 (s, 9 H), 1.65 (quint, J = 6.6 Hz, 2 H), 1.79 (quint,
J = 6.6 Hz, 2 H), 2.63–2.72 (m, 4 H), 3.20 (q, J = 6.0 Hz, 2 H), 3.55
(q, J = 6.4, 2 H), 3.88 (s, 3 H), 3.89 (s, 3 H), 5.37 (br s, 1 H), 7.03
(dd, J = 8.0, 1.6 Hz, 1 H), 7.14 (t, J = 8.0 Hz, 1 H), 7.66 (dd, J = 7.6,
1.6 Hz, 1 H), 8.15 (br s, 1 H).
13C NMR: d = 28.5, 29.8, 29.9, 37.7, 39.0, 47.3, 47.6, 56.1, 61.3,
78.8, 115.2, 122.7, 124.5, 127.1, 147.4, 152.6, 156.2, 165.3.
HRMS: m/z calcd for C21H35N5O7: 470.2609 (M + H, free amine);
found: 470.2600.
N-[3-(2,3-Dihydroxybenzamido)propyl]-1,3-bis[2-(2-hydroxy-
phenyl)-trans-5-methyl-2-oxazoline-4-carboxamido]propane
(Vulnibactin) (6)
HRMS: m/z calcd for C20H33N3O5: 396.2493 (M + H); found:
396.2482.
Ethyl 2-hydroxybenzimidate11 (0.85 g, 5.12 mmol) was added to a
solution of 5 (1.01 g, 1.60 mmol) in anhyd EtOH (25 mL). The mix-
ture was heated at reflux under N2 for 36 h and then concentrated in
vacuo. Column chromatography on LH-20 (eluting with 10%
EtOH–toluene) afforded 0.97 g (90%) of 6 as a grey solid. The spec-
tral characteristics were identical with those reported in the litera-
ture;6 mp 94–97 °C (Lit.6 mp 93–97 °C); [a]25 +92.5 (c = 0.80,
CH3OH).
1H NMR (CD3OD): d = 1.40 (2 d, J = 6.4, 3 H), 1.51 (2 d, J = 6.4
Hz, 3 H), 1.76–1.88 (m, 2 H), 1.91–2.09 (m, 2 H), 3.12–3.85 (m, 8
H), 4.42 (2 d, J = 7.2 Hz, 1 H), 4.77 (2 d, J = 6.4 Hz, 1 H), 4.91 (2
quint, J = 6.4 Hz, 1 H), 5.24 (2 quint, J = 6.4 Hz, 1 H), 6.65 (2 t,
J = 8.0 Hz, 1 H), 6.78–6.94 (m, 5 H), 7.17–7.21 (m, 1 H), 7.28–7.40
(m, 2 H), 7.57–7.65 (m, 2 H).
N1-(2,3-Dimethoxybenzoyl)norspermidine (3)
Freshly distilled trifluoroacetic acid (48 mL) in CH2Cl2 (10 mL)
was added dropwise to a flask containing 2 (6.30 g, 16.10 mmol) in
CH2Cl2 (30 mL) under N2 with ice-bath cooling and the mixture was
stirred at 0 °C for 1 h and at r.t. for 1 h. Solvents were removed un-
der vacuum to give a light brown oil. The oil was taken up in CH2Cl2
(100 mL) and extracted with aq sat. K2CO3 (2 × 25 mL). The com-
bined organic layers were evaporated in vacuo to give 4.61 g (97%)
of 3.
1H NMR: d = 1.66 (quint, J = 6.8 Hz, 2 H), 1.81 (quint, J = 6.8 Hz,
2 H), 2.70–2.81 (m, 6 H), 3.55 (q, J = 6.4 Hz, 2 H), 3.89 (s, 3 H),
3.90 (s, 3 H), 7.03 (dd, J = 8.0, 1.6 Hz, 1 H), 7.15 (t, J = 8.0 Hz, 1
H), 7.66 (dd, J = 8.0, 1.6 Hz, 1 H), 8.12 (br s, 1 H).
13C NMR: d = 29.2, 30.5, 37.2, 40.8, 46.6, 48.4, 56.1, 61.4, 115.4,
122.6, 124.5, 152.6, 161.9, 162.6, 165.9.
13C NMR (CD3OD): d = 20.2, 21.4, 28.3, 30.1, 37.6, 37.8, 44.6,
46.6, 72.9, 75.7, 79.7, 80.6, 111.5, 111.6, 116.7, 117.6, 117.7,
118.5, 119.6, 119.7, 119.9, 120.0, 129.4, 129.6, 135.0, 135.1, 147.4,
150.3, 160.9, 161.1, 167.4, 167.9, 171.1, 171.6, 173.2.
HRMS: m/z calcd for C15H25N3O3: 296.1969 (M + H); found:
296.1965.
HRMS: m/z calcd for C35H39N5O9: 675.2891 (M + 2 H); found:
675.2871.
N1,N4-Bis[(L)-N-tert-butoxycarbonylthreonyl]-N7-(2,3-dimeth-
oxybenzoyl)norspermidine (4)
A solution of freshly prepared (L)-N-hydroxysuccinimido-N-(tert-
butoxycarbonyl)threonate)12 (3.48 g, 11.0 mmol) in DMF (25 mL)
was added to a solution of 3 (1.48g, 5.0 mmol) in anhyd DMF (25
mL). After stirring for 72 h, the solvent was removed under vacuum
and the residue was taken up in CH2Cl2 (100 mL). The CH2Cl2 layer
was washed with aq 5% K2CO3 (3 × 50 mL), distilled H2O (50 mL),
brine, and concentrated in vacuo. Flash chromatography eluting
with 10% EtOH–EtOAc afforded 3.45 g (99%) of 4 as a white foam.
1H NMR: d = 1.15–1.24 (m, 6 H), 1.45 (s, 18 H), 1.62–2.01 (m, 4
H), 3.20–3.74 (m, 8 H), 3.89 (s, 3 H), 3.91 (s, 3 H), 3.96–4.59 (m, 6
H), 5.60 (d, J = 9.2 Hz, 2 H), 7.03–7.06 (m, 1 H), 7.11–7.17 (m, 1
H), 7.62–7.66 (m, 1 H), 8.35 (br, 1 H).
Determination of Stoichiometry of Ligand–Fe(III) Complex
(Job’s Plot)
The stoichiometry of ligand–Fe(III) complex of vulnibactin was de-
termined spectrophotometrically from Job’s plot. Solutions were
monitored at the visible lmax (558 nm). A 25 mM MOPS buffer with
50% MeOH (v/v) was used to maintain pH at 7.4. Solutions contain-
ing different ligand/Fe(III) ratios were prepared by mixing appro-
priate volumes of 0.9 mM ligand solution (pH 7.4) and 0.9 mM
Fe(III) nitriloacetate (NTA) in MOPS–MeOH solution (pH 7.4).
The 0.9 mM Fe(III)-NTA solution was prepared immediately prior
to use by dilution of a 45 mM Fe(III)-NTA stock solution with
MOPS–MeOH (50:50) mixture. The Fe(III)-NTA stock solution
was prepared by mixing equal volumes of 90 mM of FeCl2 and 180
mM trisodium NTA. The iron content was verified by ICP-MS.
13C NMR: d = 18.9, 19.3, 27.8, 28.3, 28.4, 28.8, 36.3, 37.3, 42.9,
45.2, 53.5, 56.1, 59.0, 61.4, 67.3, 68.6, 80.1, 80.5, 115.4, 122.6,
124.4, 126.7, 147.6, 152.6, 156.4, 165.6, 171.3, 172.1, 173.0.
HRMS: m/z calcd for C35H55N5O11 698.3971 (M + H); found:
698.3960.
Acknowledgment
Funding was provided by the National Institutes of Health Grant
No. R37-DK49108. We acknowledge the spectroscopy services in
the Chemistry Department, University of Florida, for the mass spec-
trometry analyses.
N1,N4-Bis[(L)-threonyl]-N7-(2,3-dimethoxybenzoyl)norspermi-
dine Dihydrobromide (5)
A 1 M solution of BBr3 (62.3 mL, 62.3 mmol) was added dropwise
at –78 °C to a solution of 4 (2.90 g, 4.16 mmol) in CH2Cl2 (50 mL).
After complete addition of BBr3, the mixture was allowed to warm
to r.t. and stirred for an additional 20 h. The mixture was cooled to
0 °C and cautiously treated dropwise with H2O (75 mL). After 3 h
of vigorous stirring, the aqueous layer was removed and evaporated
in vacuo at 25 °C to give a light brown solid. This residue was taken
up in EtOH (25 mL) and concentrated several times. The resulting
brown solid was easily purified on Sephadex LH-20 eluting with
20% EtOH–toluene to give 2.35 g (90%) of 5 as a brown solid.
References
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Synthesis 2007, No. 7, 1033–1037 © Thieme Stuttgart · New York