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J.-m. Hao et al. / Journal of Molecular Structure xxx (2014) xxx–xxx
ZnAO lengths are 1.931(2) (Zn1AO3#1) and 1.955(2) Å (Zn1AO1),
which are comparable to those of the similar zinc complexes [26].
In complex 1, the carboxylate groups of hmph2ꢂ ligands adopt
bis-monodentate coordination mode bridge adjacent Zn atoms giv-
ing rise to a 1D zig–zag chain [Zn(hmph)] (Fig. 1b), in which the
Znꢁ ꢁ ꢁZn separation is 7.703(8) Å. The pbmb ligands exhibit anti-
conformation with the dihedral angle between the two benzimid-
azole planes of 83.870(8)° and the Znꢁ ꢁ ꢁZn distance across a pbmb
ligand is 10.648(1) Å. The chains are connected by pbmb ligands to
form a 2D butterfly-shaped network (Fig. 1c). From a topological
perspective, if Zn(II) ion is simplified as a 3-connected node and
the ligands all are considered as linkers, the 2D structure can be
described as a 63 topology (Fig. 1d). In addition, the adjacent 2D
layers are further stacked into a 3D supermolecule framework by
three kinds of H-bonding interactions in which the
C8AH8Aꢁ ꢁ ꢁO3#3, C9AH9Bꢁ ꢁ ꢁO4#2 and C11AH11Aꢁ ꢁ ꢁO4#2 (sym-
metry code #3: 1/2 ꢂ x, 1/2 + y, 1/2 ꢂ z) bond distances are
3.190(6), 3.191(5) and 3.076(4) Å and the bond angles are 150°,
146° and 118°. To better understand the supermolecule framework
of 1, the topological analysis approach is employed. All Zn(II)
centers acting as four-connecting nodes, connecting two pbmb
ligands and two hmph2ꢂ anions. And the pbmb ligands implified
to be 4-connected nodes bridging two hmph2ꢂ anions and two
Zn(II) centers and then the hmph2ꢂ are simplified as 4-connected
nodes. As a result, the 3D supermolecule network can be reduced
as a new binodal (4,4)-connected net by TOPOS 4.0 program [27],
with a point symbol of {3.4.5.6.72}2{3.6.72.82} (Fig. 1e).
Crystal structures of 2
Complex 2 crystallizes in the triclinic system with Pı space
¯
group. As shown in Fig. 2a, the fundamental structural unit of 2
contains two crystallographic independent Zn(II) centers (Zn1
and Zn2), one bridging pbmb, two chdc2ꢂ anions and half a lattice
water molecule. Each Zn1 is five-coordinated by one N1 atom and
four oxygen atoms (O3#1, O4, O5#1 and O6) (symmetry code #1:
ꢂx + 1, ꢂy + 1, ꢂz + 1) from four chdc2ꢂ anions in a monodentate
mode to conform the square pyramid coordination geometry,
which is pointed out by a s5 value of 0.009. A pair of Zn1 centers
with a separation of 3.021(6) Å are bridged by four carboxylate
groups from four chdc2ꢂ anions lying about 90° apart about each
other to form a paddle wheel-like unit of [Zn2(chdc)4], leaving
the apical sites at both terminals of the Znꢁ ꢁ ꢁZn axis occupied by
the nitrogen atoms. The Zn1AN bond distance is 2.037(3) and
the Zn1AO bond lengths are in the range of 2.027(3)–2.085(2) Å,
which are comparable to those of the similar zinc complexes
[26]. While Zn2 centers are also five-coordinated to one chelating
and two monodentate carboxylate groups (O1#3, O2#3, O7#2
and O8) (symmetry code #2: ꢂx, ꢂy + 1, ꢂz + 2; #3: x ꢂ 1, y,
z + 1) belonging to three chdc2ꢂ anions and one nitrogen atom
(N4), which have different coordination configuration with Zn1
Fig. 2. (a) The coordination environment of Zn(II) ions in complex 2. Hydrogen
atoms and the free water molecule are omitted for clarity (symmetry code: #1:
ꢂx + 1, ꢂy + 1, ꢂz + 1; #2: ꢂx, ꢂy + 1, ꢂz + 2; #3: x ꢂ 1, y, z + 1); (b) 1D loop-like
chain generate by two kinds of dinuclear units; (c) the 1D double loop-like chain of
2; (d) simplified view of the trinodal (3,4,6)-connected network topology of 2.
of chdc2ꢂ and pbmb ligands (C(11)AH(11B)ꢁ ꢁ ꢁO(2) = 3.189(5) Å,
169°), respectively. In order to more fully understand the architec-
ture of complex 2, the topological method was used to simplify and
analyze the 2D supramolecular framework. The first kind of dinu-
clear units implified to be a 6-connected node bridging four pbmb
ligands and two dinuclear units, the second dinuclear units bound
by two pbmb ligands and two dinuclear units acting as a 4-con-
nected node and then the pbmb ligands are simplified as topolog-
ically equivalent 3-connected nodes. The succeeding topology
analysis by TOPOS 4.0 program suggests the 2D coordination
framework can be simplified as a trinodal (3,4,6)-connected net-
work with a point symbol of {3.4.5}2{32.42.52.62.74.82.9}{32.62.72}
(Fig. 2d).
units, the value of the s5 factor being 0.516 demonstrating a distort
trigonal bipyramidal structure. Two Zn2 atoms linked by four
chdc2ꢂ anions to form a dinuclear unit Zn2(COO)6 with a 8-member
ring and the non-bonding Zn2ꢁ ꢁ ꢁZn2 distance is 3.798(7) Å. And
then, two kinds of dinuclear units [Zn2(chdc)4] and Zn2(COO)6
arranged alternately to generate a 1D loop-like chain (Fig. 2b).
Interestingly, the dinuclear units are further bridged by the pbmb
ligands with anti-conformations to form a double loop-like chain
(Fig. 2c), where the Zn1ꢁ ꢁ ꢁZn2 distance across pbmb ligand is
7.936(9) Å and the dihedral angles between the mean planes of
the two benzimidazole rings are 77.053(7)°. Furthermore, the adja-
cent 1D chains are constructed to a 2D supermolecule framework
via intermolecular CAHꢁ ꢁ ꢁO hydrogen-bonding interactions
between the lattice water molecules and pbmb ligands
(C(19)AH(19C)ꢁ ꢁ ꢁO(1 W) = 2.91(2) Å, 123°) and carboxyl groups
Crystal structures of 3
Single-crystal X-ray analysis shows that complex 3 is a 2D
lamella structure and it crystallizes in monoclinic space group
P21/n. The asymmetric unit contains a crystallographically distinct
Zn(II) cation, one completely deprotonated mip2ꢂ anion and one