ACS Medicinal Chemistry Letters
Letter
a
Interestingly, a hydroxyethyl substitution at Ring B (18)
afforded an alternative means of reducing lipophilicity
(ΔlogD7.4 = −0.5 vs 3) with minimal impact on bioactivity,
thus resulting in a 0.4-log superior LLE vs 3. Despite this, 18
proved inferior to 3 due to Pgp efflux that in turn markedly
diminished its brain exposure level (Table 2 and discussion
further below).
Scheme 1
The hERG SAR herein (Table 1) was governed by the
interplay between lipophilicity and the hydrogen-bond acceptor
(HBA) count in the heteroaryl Ring D, as previously reported.1
For instance, in progressing from 8 to 3 (ΔlogD7.4 = 1.5), the
hERG IC50 was improved by over 12-fold. However, the poor
hERG IC50 = 1.6 μM in 11 (logD7.4 = 1.7) was in keeping with
the increased HBA count in the Ring D oxadiazole (N + N +
O) in stark contrast to the thiadiazole (N + N) Ring D
variations (3 and 15−18), all of which displayed a superior
hERG, IC50 ≥ 39 μM (logD7.4 = 1.3−2.4). Interestingly, the
Ring B hydroxyl group in 18 did not adversely impact hERG
(IC50 = 50 μM) suggesting that the HBA effect on hERG SAR
is primarily a Ring D related effect. Finally, the Ring B magic
methyl also reduced hERG efficacy, i.e., 3 (IC50 > 100 μM) vs
12 (IC50 = 50 μM). Compound 3 was the best overall in the
hERG and CYP safety profile evaluation.
a
Reagents and conditions: (a) Et3OBF4, Na2CO3, CH2Cl2, 45 min,
68%; (b) MeOH, 70 °C, 8 h, 80%; (c) TFA, 2 h, >99% conversion;
(d) 4-fluorobenzoyl chloride, NaHCO3, 15 min, 97%; (e) recrystal-
lization (EtOH/H2O), 97% (DMB = 2,4-dimethoxybenzyl).
The in vitro bioactivity structure−activity relationship (SAR)
was established through radioligand binding (pKi) and aequorin
functional assays (pIC50) data from recombinant human NK3R
in CHO cells. The lead optimization strategy1 of combined
improvement in both bioactivity and ligand lipophilic efficiency
(LLE = pKi − logD7.4)9 was maintained. An initial emphasis
was placed on LLE as a predictive marker of improved safety
profiles.10 Other efficiency metrics such as LE11 and Fsp3
12
Based on the free drug hypothesis, the unbound fraction
rather than total drug is relevant for PKPD analysis.15 The
NK3R is mainly expressed on KNDy neurons in the ARC
region of the hypothalamus3 that is part of the circum-
ventricular organs lacking blood−brain barrier and are therefore
exposed to blood solutes.16 As such, both the unbound plasma
(fu) and the unbound brain levels (bfu) must be considered
here (Table 2). While lipophilicity alone does not correlate well
to albumin binding, this trend is often apparent in a congeneric
series.17 Hence, a compound with balanced lipophilicity such as
3 (logD7.4 = 1.5) displayed high fu and bfu levels (>50%) in
contrast to the more lipophilic congeners, e.g., 16 (Table 2). It
is noteworthy that despite an increase in unbound plasma
concentration, the systemic clearance levels (CLT) remained
low (e.g., 3, Table 2). The comparatively lower CLT in para
substituted phenyl Ring A (3, 15) against the unsubstituted
congener 17 is likely due to the metabolic blocking effect. All
analogues except 18 displayed high Caco-2 permeability with
no evidence of appreciable Pgp efflux (ER = 0.6−1.2),
consistent with the high oral availability (%F) and brain-to-
plasma ratios observed. The so-called Pgp rule-of-4 suggests that
increasing the number of HBA atoms to (N + O) ≥ 8 tends to
confer an increasing likelihood of Pgp efflux.18 This is in keeping
with the Pgp efflux in 18 (ER = 3.8) given its HBA atom count
(N + O = 8). As with 2,1 a complete oral absorption (%F >
100) was also observed in rat with compound 12 and in
monkey with 3. This phenomenon is well-known and various
underlying causes have been reported.19 No drug accumulation
was observed in 5-day once-daily oral dosing studies in rats (3
and 12) or monkeys (3), despite administration of elevated
doses (e.g., up to 1 g/kg in rats with 12), in step with the
relatively short half-life values and the previous related
observations with 2.1 Moreover, no adverse hepatotoxicity
(AST, ALT, and bilirubin levels normal) was detected in these
subchronic studies. Furthermore, 3 displayed the highest bfu =
0.525 and brain unbound concentration (Cbrain,u = 343 nM)
herein (Table 2). In contrast, 18 although nearly completely
(Table 1) were also tracked, though not as a primary focus. The
previously discovered “magic methyl” groups in Rings B and D
(Figure 1),1 so-called due to their significant impact in
improving potency and LLE, remained crucial and rendered
feasible improvements in Fsp3 and LE as well (see below).
To recall, replacing 2-methylthiazole (2) at Ring D with 3-
methyl-1,2,4-thiadiazole (8) was reported earlier to markedly
improve bioactivity and LLE (Table 1).1 Moreover, 1,2,4-
thiadiazole is regarded as a means of circumventing
bioactivation liabilities potentially relevant to the thiazole
ring.13 These considerations overall prompted us to retain the
1,2,4-thiadiazole, but to modify the 4-(thiophen-2-yl)phenyl in
8 to the 4-fluorophenyl Ring A (i.e., 3) present in the earlier
lead structures.1 Progression from 8 to 3 helped reduce
lipophilicity (ΔlogD7.4 = −1.5), which not surprisingly right-
shifted bioactivity by nearly one log. However, in evaluating 3
against 8, the improved LLE and absence of the thiophene ring
(a potential structural safety alert)14 was considered of greater
importance due to the reduced toxicological risk. In addition, 3
was nearly equipotent to the oral POC lead 2, while >1-log
superior in LLE. Narrowing our focus on the thiadiazole Ring
D and related variants, we observed the following descending
trend in bioactivity (Table 1): 1,2,4-thiadiazole (3) > 1,2,4-
oxadiazole (10) ≫ 1,3,4-thiadiazole (9). As with the Ring A
cases, increased lipophilicity in Ring D helped improve
bioactivity albeit offset by a loss in LLE, e.g., 11 vs 10 (Table
1). The impact of Rings B and D magic methyl groups on SAR
trends was quite pronounced, as expected based on previous
results,1 since the corresponding des-Me analogues of 3,
whether at Ring B or D (12 and 13, respectively), were
decidedly inferior in both bioactivity and LLE (Table 1). Gem
dimethyl Ring B substitution substantially eroded the
bioactivity (14 vs 3) in keeping with the unfavorable impact
of (S)-Me at this Ring B position (data not shown).1 Once
again, improved bioactivity followed increased lipophilicity
whether at Ring A (15) or at Ring D (16) positions, but this
gain was negated by a deteriorated LLE against 3. Conversely,
replacing 4-fluorophenyl with phenyl at Ring A, i.e., 17, helped
diminish lipophilicity, but it also deteriorated bioactivity.
unbound in the brain displayed a comparatively low Cbrain,u
45.6 nM consistent with its elevated Pgp efflux ratio.
=
B
ACS Med. Chem. Lett. XXXX, XXX, XXX−XXX