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N. Ljubijankić et al., DNA Binding Properties of Two Ruthenium(III) Complexes
Synthesis
Physical Measurements
Preparation of Ligands
Elemental analyses were performed on a Perkin Elmer
N-substituted-5-X-salicylidenimines, hereinafter N-R-5-
XsalimH (R = C4H9, C6H5, X = H, Cl) were prepared by
simple condensation of butyl amine with salicylalde-
hyde and aniline with 5-chlorosalicylalde-hyde in molar
ratio 1 : 1 at room temperature. Solid N-phenyl-5-chlo-
rosalicylidenimine was recrystallized from ethanol at
70 °C with 70−80 % yield.
2400 Series CHNS/O Analyzer. Mass spectra were
obtained on a matrix-assisted laser desorption / ioniza-
tion–time–of-flight MALDI-TOF/TOF mass spectrome-
ter (4800 Plus MALDI TOF/TOF analyzer, Applied
Biosystems Inc., Foster City, CA, USA) equipped with
Nd:YAG laser operating at 355 nm with firing rate
200 Hz in the negative ion reflector mode. 1600 shots
per spectrum was taken with mass range 10−1500 Da,
focus mass 500 Da and delay time 100 ns. Small
amount of sample (on pipette tip) was resuspended in
10 µl of DHB MALDI matrix (5 mg/mL; dissolved in
50/50 acetonitrile/water, v/v) and 1 µl was spotted on
MALDI plate. The spectrum was internally calibrated
providing measured mass accuracy within 5 ppm
of theoretical mass riboflavin and 3-aminosalicylic
acid were used as internal calibrants in negative ion
mode.
The infrared spectra were recorded as KBr pellets
on a Perkin Elmer spectrum BX FTIR System in the
region 4000−400 cm−1. UV/visible spectra, hydrolyses
and CT DNA binding were measured on a Perkin Elmer
lambda 35 spectrophotometer. Hydrolysis experiments
were performed by adding the concentrated solution of
complexes in DMSO to water buffered solutions (phos-
phate buffer, pH 7.5). The stock solution of CT DNA
was prepared in Tris-HCl buffer at pH 7.4 and stored at
4 °C maximally 1−4 days. The concentration of DNA
was calculated on the basis of extinction coefficient
6600 M−1 cm−1 at 260 nm.23 The purification of DNA by
phenol extraction methods improved the ratio of UV
absorbance at 260 and 280 nm A260/A280 ca. 1.8, indicat-
ing that DNA was satisfactory free from proteins. The
absorption of DNA itself was removed by adding the
same amount of DNA in reference solutions as in ruthe-
nium complex-DNA solutions. Concentrated stock solu-
tions of complexes were prepared by initial dissolving
compounds in small amount of DMSO and diluting to
the required concentrations.
Preparation of Complexes Na[RuCl2(N-R-5-X-salim)2]
Sodium dichloro-bis[N-phenyl-5-chlorosalicylidenimi-
nato-N,O]ruthenate(III), Na[RuCl2(N-Ph-5-Cl-salim)2].
Dichloro-bis[N-phenyl-5-chlorosalicylideniminato-
N,O]ruthenate (III), hereinafter Na[RuCl2(N-Ph-5-Cl-
salim)2], was prepared according to the published pro-
cedure22 and precipitated as sodium salt. 0.46 g
(2 mmol) N-Ph-5-Cl-salimH in 30 mL ethanol absolute
was added to the solution of 0.26 g (1 mmol)
RuCl3 · 3H2O in absolute alcohol (10 mL). The mixture
was refluxed for 3 hours at 65−70 °C and the volume
was reduced in rotary evaporator to the half of the initial
volume. The precipitation was performed by adding the
water solution of 0.058 g NaCl (1 mmol) / 1 mL. The
dark green solid was washed with diethyl ether and
dried over P2O5. Yield: 55 %.
Anal. Calc. for NaRuC26H18Cl4O2N2; (%):
C, 49.30; H, 2.86; N, 4.42. Found (%): C, 48.36;
H, 2.91; N, 4.21. MALDI-TOF MS m/z: 633.91
([C26H18 Cl4O2N2Ru]−, 100 %). IR(KBr) νmax / cm−1:
1583 vs (C=N), 1352 m (C−O phen), 424 w (Ru−O),
669 w (Ru-N). UV / Vis [CH2Cl2], λmax/nm: 340 and
495 (ε / M−1 cm−1): 6600 and 4144.
Sodium
dichloro-bis[N-butylsalicylideniminatoN,O]-
ruthenate(III), Na[RuCl2(N-Bu-5-H-salim)2]. To the
solution of RuCl3 · 3H2O (0.10 g, 0.38 mmol) in 5 mL
absolute ethanol, 0.76 mmol freshly prepared
butylsalicylidenimine was added. Reaction mixture
was kept at 80 °C within 90 minutes in rotary
evaporator whereby the resulting solution has changed
the color from brown to dark green. Precipitation
was performed with 1 mL water solution of NaCl
(0.02 g, 0.38 mmol). The resulting solution was kept
overnight in ice-salt bath afterward the dark solid was
filtered off and washed with ice-cold diethyleter.
Yield: 43 %.
Cyclic voltammograms of Na[RuCl2(N-R-5-X-
salim)2] were recorded on an electrochemical work-
station Autolab potentiostat/galvanostat (PGSTAT 12)
in DMF (N,N-dimethylformamide) solution with sodium
perchlorate as supporting electrolyte using glassy car-
bon working electrode and Ag/AgCl reference electrode
in the range of potential of −1.5 to +0.1 V, with scan
rate rate 0.8 V s−1. Working electrode was polished prior
to measurements with 1 μm diamond paste. Electro-
chemical titrations of ruthenium compounds with CT
DNA were recorded by cyclic voltammetry in Tris–HCl
buffered water solution (pH 7.4), at ambient tempera-
ture in 5 mL-volume conical compartment self-made
Anal.
Calc.
for
NaC22H28Cl2O2N2Ru;
Na+[RuCl2C22H28O2N2]−; (%): C, 48.30; H, 5.16;
N, 5.12. Found (%): C, 48.06; H, 5.28; N, 4.81.
MALDI-TOF MS m/z: 524.0604 ([RuCl2C22H28O2N2]−,
100 %). IR(KBr) νmax / cm−1: 1606 vs (C=N), 1305 m
(C−O phen), 404 w (Ru−O), 669 w (Ru−N). UV / Vis
[CH2Cl2], λmax / nm: 415, (ε / M−1 cm−1): 1408.
Croat. Chem. Acta 86 (2013) 215.