4′-Thio-D-arabinofuranosylpurine Nucleosides
J ournal of Medicinal Chemistry, 1998, Vol. 41, No. 20 3869
concentrated. The residue was purified by silica gel chroma-
tography (cyclohexane/EtOAc, 9:1) to afford 7â (485 mg, 40%)
eluting first followed by 7R (425 mg, 35%).
gel chromatography (CHCl3/MeOH, 97:3) to afford 11â (225
mg, 79%), which was suitable for deblocking: MS 569 (M +
H)+; 1H NMR (CDCl3) δ 8.19 (s, 1H, H-8), 7.37-7.20 (m, 13H,
aromatic H’s), 7.01 (m, 2H, aromatic H’s), 6.15 (d, 1H, H-1′,
J 1′,2′ ) 5.3 Hz), 5.36 (bs, 2H, NH2), 4.68 (d, 1H, PhCHH, J )
11.7 Hz), 4.67 (bs, 2H, NH2), 4.58-4.50 (m, 4H, two PhCH2’s),
Com p ou n d 7â: MS 608 (M + H)+; 1H NMR (CDCl3) δ 8.91
(s, 1H, H-8), 7.36-7.17 (m, 13H, aromatic H’s), 6.94 (m, 2H,
aromatic H’s), 6.22 (d, 1H, H-1′, J 1′,2′ ) 4.9 Hz), 4.68 (d, 1H,
PhCHH, J ) 11.6 Hz), 4.54 (s, 2H, PhCH2-), 4.52 (s, 2H,
PhCH2-), 4.50 (d, 1H, PhCHH-, J ) 11.6 Hz), 4.35-4.26 (m,
4.32 (dd, 1H, H-3′, J 3′,4′ ) 6.3 Hz), 4.22 (dd, 1H, H-2′, J 2′,3′
)
7.0 Hz), 3.72-3.62 (m, 2H, H-5′a, H-5′b), 3.53 (m, 1H, H-4′).
2H, H-2′, H-3′), 3.68 (dd, 1H, H-5′a, J 4′,5′a ) 4.6 Hz, J 5′a,5′b
)
9-(2,3,5-Tr i-O-ben zyl-4-th io-r-D-a r a bin ofu r a n osyl)-9H-
p u r in e-2,6-d ia m in e (11r). This compound was prepared in
75% yield by the same procedure as reported above for 11â
but starting from 7R, affording material suitable for deblock-
10.0 Hz), 3.65 (dd, 1H, H-5′b, J 4′,5′b ) 4.8 Hz), 3.54 (m, 1H,
H-4′, J 3′,4′ ) 5.0 Hz); 13C NMR (CDCl3) δ 153.3 (C-2), 152.5
(C-4), 151.3 (C-6), 146.8 (C-8), 137.4, 137.2, 136.1 (ipso C’s),
130.7 (C-5), 128.6, 128.5, 128.3, 128.21, 127.9, 127.6 (aromatic
C’s), 84.6 (C-3′), 80.7 (C-2′), 73.4, 73.3, 73.2 (three PhCH2-’s),
68.3 (C-5′), 57.4 (C-1′, J ) 162.0 Hz), 47.0 (C-4′).
1
ing: MS 569 (M + H)+; H NMR (CDCl3) δ 7.89 (s, 1H, H-8),
7.35-7.24 (m, 13H, aromatic CH’s), 7.13-7.18 (m, 2H, aro-
matic CH’s), 6.00 (d, 1H, H-1′, J 1′,2′ ) 4.0 Hz), 5.44 (bs, 2H,
NH2), 4.74 (bs, 1H, NH2), 4.64 (d, 1H, PhCHH-, J ) 12.1 Hz),
4.58 (d, 1H, PhCHH-, J ) 12.1 Hz), 4.52-4.49 (m, 4H,
PhCH2’s), 4.41 (t, 1H, H-2′, J 2′,3′ ) 3.2 Hz), 4.19 (t, 1H, H-3′,
J 3′,4′ ) 4.0 Hz), 4.01 (ddd, 1H, H-4′), 3.76 (dd, 1H, H-5′b, J 4′,5′b
) 7.4 Hz, J 5′a,5′b ) 9.6 Hz), 3.54 (dd, 1H, H-5′a, J 4′,5′a ) 6.7
Hz).
Com p ou n d 7r: MS 608 (M + H)+; 1H NMR (CDCl3) δ 8.49
(s, 1H, H-8), 7.36-7.21 (m, 13H, aromatic H’s), 7.01 (m, 2H,
aromatic H’s), 6.09 (d, 1H, H-1′, J 1′,2′ ) 2.1 Hz), 4.69 (s, 2H,
PhCH2-), 4.57 (d, 1H, PhCHH-, J ) 12.0 Hz), 4.51 (d, 1H,
PhCHH-, J ) 12.0 Hz), 4.48 (d, 1H, PhCHH-, J ) 11.9 Hz),
4.33 (d, 1H, PhCHH-, J ) 11.9 Hz), 4.26 (t, 1H, H-2′, J 1′,2′
)
2.1 Hz, J 2′,3′ ) 2.5 Hz), 4.23 (t, 1H, H-3′, J 3′,4′ ) 2.5 Hz), 4.07
(m, 1H, H-4′), 3.80 (dd, 1H, H-5′a, J 4′,5′a ) 8.2 Hz, J 5′a,5′b ) 9.5
Hz), 3.56 (dd, 1H, H-5′b, J 4′,5′b ) 6.7 Hz); 13C NMR (CDCl3) δ
152.5 (C-2), 152.4 (C-4), 151.3 (C-6), 146.2 (C-8), 137.7, 136.7
136.5 (ipso C’s), 131.2 (C-5), 128.4, 128.1, 127.9, 127.8, 127.7,
127.6 (aromatic C’s), 88.3 (C-3′), 85.2 (C-2′), 73.2, 72.7, 72.4
(three PhCH2-’s), 71.5 (C-5′), 64.5 (C-1′, J ) 160.0 Hz), 53.7
(C-4′).
9-(4-T h io -â-D -a r a b in ofu r a n osyl)-9H -p u r in e -2,6-d i-
a m in e (12). An ice-cold solution of 11â (654 mg, 1.15 mmol)
in CH2Cl2 (2.6 mL) was added dropwise to a solution of 1 M
BCl3 in CH2Cl2 (100 mL) at -50 °C. Solid precipitated from
the solution near the end of addition. The reaction in a tightly
sealed flask was stored at -20 °C for 16 h. The resulting clear
solution was evaporated to dryness at -20 °C to give a dark
residue. A solution of this material in ice-cold CH2Cl2 (25 mL)
was evaporated to dryness four times to provide a foam. Ice-
cold saturated aqueous NaHCO3 (20 mL) was added to the
foam, and the mixture was stirred vigorously until the pH
remained stable (pH 7-8). Water (150 mL) was added to form
a clear solution that was extracted with two portions of CH2-
Cl2 (50 mL, 25 mL) to remove color and impurities. The
colorless aqueous layer was held briefly under vacuum to
remove residual CH2Cl2 before being applied to a column (13
× 190 mm) of Bio Beads SM-4 (100-200 mesh; Bio-Rad
Laboratories) equilibrated in water. Water elution with
fractions monitored at 254 nm provided pure 12 that was
crystallized from hot H2O (233 mg, 68%). More 12 was
obtained from the column with a MeOH wash (33 mg, 10%):
mp 285 °C dec (lit.27 mp 292-295 °C); TLC 3:1:0.1 CHCl3-
MeOH-NH4OH, Rf 0.30; HPLC 100%, 3:1 NH4H2PO4 (0.01 M,
pH 5.1)-MeOH; MS 299 (M + H)+; UV λmax pH 1, 255 (11.1),
291 (10.9), pH 7, 257 (9.72), 280 (11.6), pH 13, 258 (9.67), 280
(11.8); 1H NMR and microanalytical data have been previously
reported.27
2-Ch lor o-9-(4-th io-â-D-a r a bin ofu r a n osyl)a d en in e (9â).
A mixture of compound 7â (608 mg, 1 mmol) and saturated
ethanolic ammonia (100 mL) was heated at 50 °C in a glass-
lined stainless steel pressure vessel for 48 h. The reaction
mixture was evaporated to dryness to afford a solid (8â) that
was dissolved in CH2Cl2 (50 mL) and was treated at -78 °C
under argon with a solution of 1 M BBr3 in CH2Cl2 (12 mL).
After the mixture stirred for 0.5 h at -78 °C, CH3OH (10 mL)
was added, followed by pyridine (10 mL), and the solution was
evaporated to dryness. The brown-colored crude product was
purified by silica gel chromatography (CHCl3/MeOH, 7:1) to
afford compound 9â as a white powder that was crystallized
from EtOH (257 mg, 81%): mp 207-209 °C; MS 318 (M +
1
H)+; H NMR (DMSO-d6) δ 8.39 (s, 1H, H-8), 7.78 (br s, 2H,
NH2), 5.90 (d, 1H, H-1′, J 1′,2′ ) 5.2 Hz), 5.74 (d, 1H, 2′-OH, J
) 4.3 Hz), 5.51 (d, 1H, 3′-OH, J ) 4.6 Hz), 5.18 (t, 1H, 5′-OH,
J ) 5.1 Hz), 4.12-4.08 (m, 2H, H-3′, H-2′), 3.80 (dd, 1H, H-5′a,
J 4′,5′a ) 4.3 Hz, J 5′a,5′b ) 11.2 Hz), 3.77 (dd, 1H, H-5′b, J 4′,5′b
)
6.5 Hz), 3.22 (mm, 1H, H-4′, J 3′,4′ ) 6.4 Hz). Anal. (C10H12
-
ClN5O3S) C, H, N.
2-F lu or o-9-(2,3,5-t r i-O-b en zyl-4-t h io-â-D-a r a b in ofu r a -
n osyl)a d en in e (13â). Diamino compound 11â (91 mg, 0.16
mmol) was dissolved in 1:1 HF-pyridine at 0-5 °C by vigorous
stirring and sonication. To this cloudy solution at -20 °C was
added tert-butyl nitrite (30 µL, 0.24 mmol). After 2.75 h, more
tert-butyl nitrite (8 µL, 0.065 mmol) was added, and the
reaction was held at -15 °C for an additional 1 h. The cold
reaction solution was added dropwise over 0.5 h to a vigorously
stirred mixture of saturated aqueous NaHCO3 and ice (400
mL). The mixture was stirred until most of the ice had melted.
Small portions of solid NaHCO3 were added to stabilize the
pH at 7-8 (monitor with pH paper). CHCl3 (50 mL) was
added, the layers were separated, and the aqueous layer was
extracted with more CHCl3 (2 × 50 mL). The combined CHCl3
layers were washed with H2O (2 × 50 mL), dried (MgSO4),
and evaporated to dryness. The resulting residue was taken
up in CHCl3 and applied to two Analtech GF plates (20 × 20
cm, 1000 µm) that were developed in 95:5 CHCl3/MeOH.
Extraction of the desired band with 1:1 CHCl3/MeOH yielded
upon evaporation essentially pure 13â (70 mg, 76%). This
residue was used directly in the deprotection step described
below. Crystallization of a small sample from MeOH gave
pure 13â: mp 196-197 °C; TLC 98:2 CHCl3-MeOH, Rf 0.50;
HPLC 100%, 9:1 MeCN/H2O; MS 572 (M + H)+; UV (EtOH)
λmax 263 (16.8), 271 (sh); 1H NMR (CDCl3) δ 8.48 (s, 1H, H-8),
7.36-7.18 (m, 13H, aromatic CH’s), 6.99 (m, 2H, aromatic
2-Ch lor o-9-(4-th io-r-D-a r a bin ofu r a n osyl)a d en in e (9r).
This compound was prepared from 7R by the same procedure
as reported for 9â in 56% yield after two crystallizations from
EtOH: mp 237 °C dec; TLC 3:1:0.1 CHCl3-MeOH-NH4OH,
Rf 0.55; MS 318 (M + H)+; UV λmax pH 1, 266 (14.7), pH 7, 265
1
(15.6), pH 13, 266 (15.3); H NMR (DMSO-d6) δ 8.47 (s, 1H,
H-8), 7.82 (br s, 2H, NH2), 5.83 (d, 1H, 2′-OH, J ) 5.5 Hz),
5.66 (d, 1H, 3′-OH, J ) 5.0 Hz), 5.65 (d, 1H, H-1′, J 1′,2′ ) 7.1
Hz), 4.98 (dd, 1H, 5′-OH, J 5′a,OH ) 4.6 Hz, J 5′b,OH ) 6.0 Hz),
4.48 (m, 1H, H-2′, J 2′,3′ ) 7.7 Hz), 3.90 (m, 1H, H-5′a, J 4′,5′a
)
3.8 Hz, J 5′a,5′b ) 10.9 Hz), 3.75 (m, 1H, H-3′, J 3′,4′ ) 8.2 Hz),
3.64 (m, 1H, H-4′), 3.44 (m, 1H, H-5′b, J 4′,5′b ) 8.3 Hz). Anal.
(C10H12ClN5O3S) C, H, N.
9-(2,3,5-Tr i-O-ben zyl-4-th io-â-D-a r a bin ofu r a n osyl)-9H-
p u r in e-2,6-d ia m in e (11â). A solution of 7â (303 mg, 0.5
mmol) and sodium azide (162.5 mg, 2.5 mmol) in 20 mL of
95% EtOH was heated at reflux for 2 h. The solvent was
removed in vacuo, and the residue was partitioned between
CH2Cl2 and H2O. The organic phase was dried (MgSO4) and
concentrated in vacuo to yield 290 mg of a yellowish solid (10â)
[TLC CHCl3/MeOH, 97:3; Rf 0.45; MS m/z 621 (M + H)+],
which was redissolved in 20 mL of CH2Cl2 and 2 mL of CH3-
OH. This solution was treated with SnCl2 (190 mg, 1 mmol),
and the resulting suspension was stirred for 30 min. After
evaporation of solvent, purification was accomplished by silica