6946 Journal of Medicinal Chemistry, 2004, Vol. 47, No. 27
Fedi et al.
7.99 (d, J ) 8.7 Hz, 1H), 7.78 (d, J ) 8.8 Hz, 1H), 7.63 (bs,
1H), 7.57 (bs, 1H), 7.42 (d, J ) 8.1 Hz, 1H), 7.33 (d, J ) 8.1
Hz, 1H), 7.29-7.15 (m, 10H), 7.06 (t, J ) 7.5 Hz, 1H), 7.01-
6.96 (m, 2H), 6.69 (d, J ) 9.1 Hz, 1H), 4.80 (t, J ) 9.4 Hz,
1H), 4.54 (m, 1H), 4.41 (q, J ) 6.5 Hz, 1H), 4.23 (m, 1H), 4.15
(m, 1H), 4.02 (m, 1H), 3.64 (d, J ) 11.3 Hz, 1H), 3.55 (m, 1H),
3.35 (m, 1H), 3.12-2.99 (m, 4H), 2.79-2.71 (m, 5H), 2.56 (dd,
J ) 15.7, 5.7 Hz, 1H), 2.43 (dd, J ) 15.7, 6.9 Hz, 1H), 2.29
(dd, J ) 14.9, 6.1 Hz, 1H), 1.83 (s, 3H).
a gentle reflux of the solvent. At the end of the addition of the
amine, the reaction mixture was refluxed for 2 h. After this
time the mixture was cooled to room temperature and then to
0 °C. The suspension was then filtered off by suction and the
filtrate evaporated down to dryness. The semisolid residue was
then taken up in ethyl acetate (100 mL) and the extract
washed with water (100 mL) and then dried over sodium
sulfate. Removal of the solvent under reduced pressure gave
43a (12.11 g, 57 mmol, >98% yield) as a clear yellow brown
liquid. This material was used for the next synthetic step
without further purification. TLC (ethyl acetate/MeOH/Et3N
94/5/1): Rf ) 0.71. MS (m/z) (ES+): 202.1 (MH+). 1H NMR
(200 MHz, CDCl3): δ 3.66-3.42 (m, 4H), 2.96 (2, 2H), 2.50-
2.25 (m, 4H), 1.32 (s, 9H).
Morpholin-4-yl-acetic Acid (44a). The morpholine ester
43a (2.5 g, 12 mmol) was dissolved in dichloromethane (35
mL), the solution treated with TFA (15 mL), and the mixture
stirred for 5 h at room temperature. After this time the
solution was evaporated down to dryness and the product
crystallized out by treatment of the residue with diisopropyl
ether. The off-white crystalline solid 44a (2.47 g, 12 mmol, 99%
yield), filtered off by suction and dried over CaCl2 overnight,
was obtained as a nonstoichiometric complex with trifluoro-
acetic acid and used for the next synthetic step. 1H NMR (200
MHz, DMSO-d6): δ 12.65-11.66 (br s, 1H), 4.06 (s, 2H), 3.84-
3.73 (m, 4H), 3.30-3.27 (m, 4H).
N-[5-(S),8-(R)-Dibenzyl-2-(S)-(1H-indol-3-ylmethyl)-3,6,-
11,14-tetraoxo-1,4,7,10-tetraaza-cyclotetradec-12-(R)-yl]-
2-morpholin-4-yl-acetamide Trifluoroacetate (48). The
amino acid 44a (0.021 g, 0.1 mmol) was dissolved in DMF (5
mL), and the solution was treated with HOBt (0.06 g, 0.45
mmol) and EDC‚HCl (0.02 g, 0.1 mmol). After 10 min of
stirring the solution was completely clear, 7a (0.06 g, 0.1 mmol)
was added, and the resulting mixture was stirred for 4 h. After
that time the solvent was removed under reduced pressure
and the residue was purified by preparative HPLC (Symmetry
RP-18 column (19 × 300 mm), flow rate: 15 mL/min, H2O +
0.1% TFA/CH3CN + 0.1% TFA, gradient 70/30 f 30/70 in 60′)
to give 48 (0.015 g, 0.02 mmol, 20%) as lyophile. HPLC: (B)
12.2′, 97.7 purity. MS (m/z) (ES+): 708.5 (MH+). 1H NMR (500
MHz, DMSO-d6): δ 10.71 (bs, 1H), 8.62 (bs, 1H), 8.60 (d, J )
5.2 Hz, 1H), 8.04 (bs, 1H), 7.46 (d, J ) 7.8 Hz, 1H), 7.34 (d, J
) 8.1 Hz, 1H), 7.28-7.24 (m, 7H), 7.19-7.16 (m, 4H), 7.08 (t,
J ) 7.2 Hz, 1H), 7.07 (m, 1H), 6.99 (t, J ) 7.1 Hz, 1H), 6.79
(d, J ) 8.8 Hz, 1H), 4.64 (m, 1H), 4.23 (m, 1H), 4.18 (m, 1H),
4.05 (m, 1H), 3.79 (bs, 4H), 3.36 (dd, J ) 14.2, 4.1 Hz, 1H),
3.12 (bs, 3H), 2.97 (dd, J ) 14.2, 4.1 Hz, 1H), 2.87-2.74 (m,
5H), 2.34 (dd, J ) 14.1, 8.3 Hz, 1H).
General Procedure To Obtain Products 36-40: Re-
ductive Amination on the Carbonylic Function of the
Starting Sugar Moiety. N-(1-(S)-{[5-(S),8-(R)-Dibenzyl-2-
(R)-(1H-indol-3-ylmethyl)-3,6,11,14-tetraoxo-1,4,7,10-tet-
raaza-cyclotetradec-12-(R)-ylamino]-methyl}-2-(R),3-(S),4-
(R),5-tetrahydroxy-pentyl)-acetamide (36). To a solution
of 7a (0.041 g, 0.07 mmol) in anhydrous methanol (5 mL) were
added acetic acid (0.08 mL, 1.3 mmol), 2-acetamido-2-deoxy-
â-D-glucopyranosyl amine (0.018 g, 0.08 mmol), and Na(CN)-
BH3 (0.02 g, 0.3 mmol). After 48 h, the conversion being not
more than 25%, further 2-acetamido-2-deoxy-â-D-glucopyra-
nosyl amine (0.018 g, 0.08 mmol) and Na(CN)BH3 (0.02 g, 0.3
mmol) were added and the reaction mixture was maintained
under magnetic stirring at room temperature totally for 7 days.
The solution was then acidified to pH 1-2 with HCl 1 N,
diluted with water, and concentrated to eliminate methanol,
then NaHCO3 was added, and extractions with ethyl acetate
were repeated three times. The organic phase, after treatments
with brine and MgSO4, was concentrated to dryness, and the
residue was purified by preparative HPLC (Symmetry RP-18
column (19 × 300 mm), flow rate 15 mL/min, H2O + 0.1% TFA/
CH3CN + 0.1% TFA, gradient 90/10 f 60/30 in 60′) to give 36
(0.018, 0.018 mmol, 27% yield) as trifluoroacetate. HPLC: (B)
11.70′, 98% purity. MS (m/z) (ES+): 786.3 (MH+). 1H NMR
(500 MHz, DMSO-d6): δ 10.87 (bs, 1H), 8.91 (bs, 2H), 8.78 (bs,
1H), 7.76 (bs, 1H), 7.47 (d, J ) 7.6 Hz, 1H), 7.44 (bs, 1H), 7.35
(d, J ) 8.1 Hz, 1H), 7.26-6.97 (m, 17H), 6.85 (bs, 1H), 5.02
(bs, 1H), 4.56 (bs, 1H), 4.45 (bs, 1H), 4.30 (bs, 1H), 4.20 (bs,
1H), 4.11 (bs, 1H), 4.04 (bs, 2H), 3.80 (bs, 1H), 3.72 (bs, 1H),
3.57 (d, J ) 8.3 Hz, 1H), 3.41 (m, 3H), 3.20-3.11 (m, 3H),
2.94-2.72 (m, 6H), 1.86 (s, 3H).
In a similar way starting from 7a and the correct starting
sugar (Table 3) products 37-40 were obtained (25-40%
yields).
2-(S),3-(R),5-(R),6-Tetrahydroxy-4-(R)-(O-r-D-glucopy-
ranosyl)-hexanoic Acid [5-(S),8-(R)-Dibenzyl-2-(S)-(1-H-
indol-3-ylmethyl)-3,6,11,14-tetraoxo-1,4,7,10-tetraaza-cy-
clotetradec-12-(R)-yl]-amide (41). 7a (0.049 g, 0.084 mmol),
PyBOP (0.133 g, 0.25 mmol), 4-O-â-D-galactopyranosyl-D-
gluconic acid (0.09 g, 0.25 mmol), and diisopropyl ethyl amine
(0.13 mL, 0.07 mmol) were dissolved in DMF (1 mL) and
stirred for 4 days at room temperature. The crude mixture was
then directly passed through preparative HPLC (Vydac C-18
column (19 × 250 mm), flow rate 24 mL/min, H2O + 0.1% TFA/
CH3CN + 0.1% TFA, gradient 90/10 f 60/40 in 120′) for
purification of 41, which was obtained as a lyophile (0.026 g,
0.032 mmol, 40% yield). HPLC: (C) 3.06′, >99% purity. MS
In a similar way products 49-57 were obtained.
Procedure for the Obtainment of the Amine Portion
47 (Precursor of 54). 4-Benzyl-piperazine-1-sulfonic Acid
Amide (46). To a solution of benzyl piperazine (14.1 g, 80
mmol) in THF (100 mL) cooled at 0 °C was added dropwise a
solution of sulfamoyl chloride (9.25 g, 80 mmol) in THF (250
mL) during a period of 1 h. The reaction mixture was then
stirred at room temperature for 4 h and left without stirring
overnight. The insoluble solid was then filtered by suction,
washed with THF, and treated with a saturated solution of
NaHCO3. Extracts with ethyl acetate were collected, washed
with brine, and dried over sodium sulfate. The organic phase
was then evaporated to dryness under reduced pressure and
the resulting solid treated with diethyl ether, filtered, washed,
and dried to give 5.24 g (20.8 mmol, 26% yield) of 46, which
was directly used for the deprotecting treatment. TLC (ethyl
acetate): Rf ) 0.54. HPLC: (A) 3.2′. MS (m/z) (ES+): 256.1
1
(m/z) (ES+): 921.4 (MH+). H NMR (500 MHz, DMSO-d6): δ
10.79 (m, J ) 2.1 Hz, 1H), 8.81 (d, J ) 4.8 Hz, 1H), 7.96 (d, J
) 8.9 Hz, 1H), 7.68 (d, J ) 6.5 Hz, 1H), 7.55 (t, J ) 5.6 Hz,
1H), 7.42 (d, J ) 7.9 Hz, 1H), 7.32 (d, J ) 8.1 Hz, 1H), 7.29-
7.15 (m, 10H), 7.06 (t, J ) 7.9 Hz, 1H), 6.99-6.96 (m, 2H),
6.75 (d, J ) 9.1 Hz, 1H), 5.32 (bs, 1H), 5.09 (bs, 1H), 4.78 (bs,
1H), 4.67 (m, 1H), 4.55 (bs, 1H), 4.29-4.22 (m, 3H), 4.14 (m,
1H), 4.05-4.00 (m, 2H), 3.71 (m, 2H), 3.60-3.58 (m, 2H), 3.53-
3.50 (m, 5H), 3.15 (dd, J ) 12.3, 6.3 Hz, 1H), 3.04 (dd, J )
14.5, 4.7 Hz, 1H), 2.80-2.70 (m, 5H), 2.29 (dd, J ) 14.5, 7.0
Hz).
1
(MH+). H NMR (200 MHz, DMSO-d6): δ 7.40-7.17 (m, 5H),
6.74 (br s, 2H), 3.48 (s, 2H), 3.04-2.87 (m, 4H), 2.48-2.37 (m,
4H).
General Procedure for the Obtainment of Products
49-57 via Acylation of 7a with Carboxylic Acids 44a-j.
Morpholin-4-yl-acetic Acid tert-Butyl Ester (43a). tert-
Butyl bromoacetate (11.19 g, 57 mmol) was dissolved in THF
(70 mL) and the solution treated by dropwise addition with
an equimolar mixture of morpholine (5 g, 57 mmol) and
triethylamine (8 mL, 57 mmol) at such a rate as to maintain
Piperazine-1-sulfonic Acid Amide (47). 4-Benzyl-pip-
erazine-1-sulfonic acid amide 46 (1.35 g, 5.3 mmol) was
dissolved in methanol (25 mL), and the solution was treated
with a suspension of Pd/C 10% (0.15 g) in methanol/H2O 1/1
v/v (5 mL). The resulting suspension was shaken under H2
atmosphere at normal pressure for 3 h. During that time 120