D.-W. Zhang et al. / Tetrahedron 65 (2009) 9997–10001
10001
proton and CaH is shorter (O–NHa.HCa, distance 2.36 Å) than that
between the C-terminal general amide NHb proton and -H
(NHb.HCa, distance 3.29 Å). This is in accordance with the 2D
NOESY result that a strong NOE was observed in NHi.HiCa but
NMR (376.2 MHz, CDCl3):
d
¼ꢁ133.5 ppm; IR (CH2Cl2) 3264, 2961,
a
1656, 1553 cmꢁ1; HRMS (ESI) for C14H27FN2O3 (MþþH): calcd
291.2084, found 291.2069.
a weak NOE in NHiþ1.HiCa. The conformation of fluorinated
a-
Acknowledgements
aminoxy amide in the solid state is very similar to that in organic
solvent. The crystal structure of compound 1 indicates that the
incorporated fluorine atom has no effect on the adoption of the
Financial support by the National Natural Science Foundation of
China (Project No. 20202001), Fok Ying Tung Education Foundation
(Project No. 94023) and Key Laboratory of Organofluorine Chem-
istry (SIOC) are gratefully acknowledged. D.-W. Z. thanks Fudan
University for the conferment of the Century Star Award.
a
N–O turn. As shown in Figure 8, the fluorine atom on the side
chain does not form intra- or intermolecular hydrogen bonds with
NH protons.
3. Conclusions
Supplementary data
In conclusion,
adopt the stable secondary structure of
fluorine atom at the end of the side chain does not form a hydrogen
bond with general amide and aminoxy amide NH protons. This
a
-aminoxy diamides with fluorinated side-chains
N–O turn, while the
Synthetic schemes and characterization data of 1–2 and in-
termediates; copies of IR spectra of 1 and 2; crystallographic data of
1. The supplementary data associated with this article can be found
a
result suggests that the fluorinated side chain a-aminoxy residues
can be incorporated into peptides without disarranging the back-
bone structure, but acting as a potential biological tracer in bi-
ological studies of aminoxy foldamers.
References and notes
1. (a) Welch, J. T. Tetrahedron 1987, 43, 3123–3197; (b) Biomedicinal Frontiers of
Fluorine Chemistry; Ojima, I., McCarthy, J. R., Welch, J. T., Eds. ACS Symposium
Series; American Chemical Society: Washington, DC, 1996, Vol. 639; (c) Asym-
metric Fluoroorganic Chemistry: Synthesis, Applications, and Future Directions;
Ramachandran, P. V., Ed. ACS Symposium Series; American Chemical Society:
Washington, DC, 2000, Vol. 746; (d) Yoder, N. C.; Kumar, K. Chem. Soc. Rev. 2002,
31, 335–341; (e) Qiu, X.-L.; Meng, W.-D.; Qing, F.-L. Tetrahedron 2004, 60, 6711–
6745; (f) Ja¨ckel, C.; Koksch, B. Eur. J. Org. Chem. 2005, 4483–4503; (g) Smits, R.;
Koksch, B. Curr. Top. Med. Chem. 2006, 6, 1483–1498; (h) O’Hagan, D. Chem. Soc.
Rev. 2008, 37, 308–319; (i) Hagmann, W. K. J. Med. Chem. 2008, 51, 4359–4369
and references cited therein.
2. (a) O’Hagan, D.; Rzepa, H. S. Chem. Commun. 1997, 645–652; (b) Ismail, F. M. D. J.
Fluorine Chem. 2002, 27–33; (c) Marsh, E. N. G. Chem. Biol. 2000, 7, R153–R157.
3. (a) Kreutz, C.; Kahlig, H.; Konrat, R.; Micura, R. Angew. Chem., Int. Ed. 2006, 45,
3450–3453; (b) Dalvit, C.; Fagerness, P. E.; Hadden, D. T. A.; Sarver, R. W.;
Stockman, B. J. J. Am. Chem. Soc. 2003, 125, 7696–7703; (c) Wadhwani, P.; Bu¨ rck,
J.; Strandberg, E.; Mink, C.; Afonin, S.; Ulrich, A. S. J. Am. Chem. Soc. 2008, 130,
16515–16517.
4. Experimental section
4.1. General
4.1.1. (R)-2-(N-Pivalylamidoxy)-4-fluoro-N-isobutylbutanamide
(1). White solid; mp 82.5 ꢀC; Rf¼0.34 (EtOAc:hexane¼1:2);
20
[
a]
Dþ10.4ꢀ (c 1.00, CH2Cl2); 1H NMR (400 MHz, CDCl3):
¼9.29
d
(1H, br s, NHa), 8.50 (1H, br s, NHb), 4.76–4.53 (2H, m, 2JHF¼46.9 Hz,
CH2F), 4.38 (1H, dd, J¼8.8, 3.4 Hz,
a-H), 3.14–3.03 (m, 2H), 2.47–2.30
(m, 1H), 2.16–2.00 (m, 1H), 1.88–1.77 (m, 1H), 1.21 (9H, s, t-Bu), 0.92
(3H, d, J¼6.3 Hz, Me), 0.91 (3H, d, J¼6.3 Hz, Me) ppm; 13C NMR &
DEPT (100 MHz, CDCl3):
d
¼178.5 (C]O), 170.4 (C]O), 83.4 (CH),
80.8 (CH2, d, J¼164.0 Hz), 46.8 (CH2), 38.1 (C), 32.7 (CH2, d,
4. (a) Seebach, D.; Matthews, J. L. Chem. Commun. 1997, 2015–2022; (b) Gellman,
S. H. Acc. Chem. Res. 1998, 31, 173–180.
5. Li, X.; Yang, D. Chem. Commun. 2006, 3367–3379 and references cited therein..
6. Li, X.; Wu, Y.-D.; Yang, D. Acc. Chem. Res. 2008, 41, 1428–1438 and references
cited therein.
J¼20.0 Hz), 28.5 (CH), 27.1 (CH3), 20.2 (CH3) ppm; 19F NMR
(376.2 MHz, CDCl3):
d¼ꢁ130.1 ppm; IR (CH2Cl2) 3234, 2961,
1651 cmꢁ1; HRMS (ESI) for C13H26FN2O3 (MþþH): calcd 277.1928,
found 277.1916.
7. Yang, D.; Ng, F.-F.; Li, Z.-J.; Wu, Y.-D.; Chan, K. W. K.; Wang, D.-P. J. Am. Chem. Soc.
1996, 118, 9794–9795.
8. (a) Howard, J. A. K.; Hoy, V. J.; O’Hagan, D.; Smith, G. T. Tetrahedron 1996, 52,
12613–12622; (b) Dunitz, J. D.; Taylor, R. Chem.dEur. J. 1997, 3, 89–98; (c)
Smart, B. E. J. Fluorine Chem. 2001, 3–11; (d) Desiraju, G. R. Acc. Chem. Res. 2002,
35, 565–573.
9. For details, please see the Supporting information.
10. Yin, J.; Zarkowsky, S. D.; Huffman, M. A. Org. Lett. 2004, 6, 1465–1468.
11. Mitsunobu, O. Synthesis 1981, 1–28.
12. (a) Yang, D.; Li, B.; Ng, F.-F.; Yan, Y.-L.; Qu, J.; Wu, Y.-D. J. Org. Chem. 2001, 66,
7303–7312; (b) Shin, I.; Lee, M. R.; Lee, J.; Jung, M.; Lee, W.; Yoon, J. J. Org. Chem.
2000, 65, 7667–7675.
13. Liang, G. B.; Rito, C. J.; Gellman, S. H. J. Am. Chem. Soc. 1992, 114, 4440–4442.
14. Yang, D.; Qu, J.; Li, B.; Ng, F.-F.; Wang, X.-C.; Cheung, K.-K.; Wang, D.-P.; Wu,
Y.-D. J. Am. Chem. Soc. 1999, 121, 589–590.
4.1.2. (R)-5-Fluoro-2-(N-Pivalylamidoxy)-N-isobutylpentanamide
(2). White solid; mp 89.0 ꢀC; Rf¼0.35 (EtOAc:hexane¼1:2);
20
[
a]
Dþ41.1ꢀ (c 1.00, CH2Cl2); 1H NMR (400 MHz, CDCl3):
d¼8.78
2
(1H, s, NHa), 8.31 (1H, br s, NHb), 4.62–4.41 (2H, m, JHF¼47.4 Hz,
CH2F), 4.27 (1H, dd, J¼7.8, 4.4 Hz,
a-H), 3.15–3.01 (2H, m, NCH2),
2.10–1.78 (5H, m, –CH2CH2– & CHMe2), 1.20 (9H, s, t-Bu), 0.92 (3H,
d, J¼6.4 Hz, Me); 0.91 (3H, d, J¼6.4 Hz, Me) ppm; 13C NMR & DEPT
(100 MHz, CDCl3):
d¼178.5 (C]O), 170.6 (C]O), 86.4 (CH), 84.2
(CH2, d, J¼163.1 Hz), 46.7 (CH2), 38.2 (C), 28.5 (CH), 28.1 (CH2, d,
J¼4.8 Hz), 27.2 (CH3), 26.4 (CH2, d, J¼20.0 Hz), 20.2 (CH3) ppm; 19
F