Terbenzimidazoles as Topoisomerase I Poisons
J ournal of Medicinal Chemistry, 1997, Vol. 40, No. 18 2823
(s, 1H), 8.40 (s, 1H), 8.45 (s, 1H), 8.49 (s, 1H); 13C NMR
(DMSO-d6 + 3 drops of CF3COOH) δ 112.0, 113.9, 114.7, 115.8,
116.1, 116.3, 117.8, 123.2, 125.3, 125.7, 125.8, 126.3, 126.7,
126.8, 126.9, 127.8, 128.6, 129.0, 131.0, 132.7, 133.0, 133.1,
133.6, 134.5, 135.5, 137.0, 138.6, 139.1, 141.4, 150.7, 153.7;
HRMS (FAB) calcd for C31H21N6 (MH+) 477.1828, found
477.1828.
(5.7 mg, 0.13 mmol) in 3 mL of nitrobenzene were heated at
145 °C in a sealed tube overnight. The cooled reaction mixture
was then purified directly by column chromatography. Elution
with 10% MeOH/EtOAc provided 26 mg (45%) of a brownish
white solid; mp >280 °C; IR (KBr) 3033, 2968, 2932, 1551,
1
1443; H NMR (DMSO-d6 + 3 drops of CF3COOH) δ 2.88 (s,
3H), 7.47-7.61 (m, 3H), 7.80 (d, 2H, J ) 8.5), 7.88-8.01 (m,
2H), 8.04-8.29 (m, 4H), 8.44 (d, 1H, J ) 8.5), 8.65 (s, 2H); 13
C
5-(4-Met h oxyp h en yl)-2-[2′-(b en zim id a zol-5′′-yl)b en z-
im id a zol-5′-yl]ben zim id a zole (19). The crude diamine (148
mg, 0.69 mmol), which was obtained by hydrogenation of 15
(205 mg, 0.84 mmol) in EtOAc (100 mL) using 10% Pd/C (40
mg) for 4 h, with 5 (165 mg, 0.63 mmol) provided a 54% yield
of a brownish white solid; mp 275 °C; IR (KBr) 3395, 3064,
NMR (DMSO-d6 + 3 drops of CF3COOH) δ 14.3, 111.7, 114.6,
114.9, 116.2, 116.4, 117.5, 117.6, 123.0, 123.1, 124.8, 125.5,
126.0, 126.2, 127.5, 128.2, 129.5, 131.8, 133.0, 133.1, 134.9,
138.7, 139.7, 150.7, 153.8, 153.9; HRMS (FAB) calcd for
C28H21N6 (MH+) 441.1828, found 441.1846.
1
2821, 1610, 1517, 1437, 1243; H NMR (DMSO-d6) δ 3.83 (s,
5-P h en yl-2-[2′-(2′′-eth ylben zim id a zol-5′′-yl)ben zim id a -
zol-5′-yl]ben zim id a zole (26): prepared using the crude
diamine derived from 24 (75 mg, 0.16 mmol) and propional-
dehyde (7.3 mg, 0.13 mmol) using 3 mL of nitrobenzene in a
sealed tube overnight to provide a 28% yield of a brownish
white solid; mp >280 °C; IR (KBr) 3019, 2961, 1624, 1436,
3H), 7.07 (d, 2H, J ) 8.5), 7.48 (dd, 1H, J ) 8.5, 1.5), 7.64-
7.81 (m, 6H), 8.10-8.28 (m, 2H), 8.40 (s, 1H), 8.42 (s, 1H), 8.50
(s, 1H); 13C NMR (DMSO-d6 + 3 drops of CF3COOH) δ 55.5,
107.4, 110.9, 113.8, 114.5, 114.7, 114.8, 115.8, 116.1, 116.3,
117.6, 123.1, 125.2, 126.2, 128.6, 131.2, 131.9, 132.0, 133.0,
138.5, 139.2, 141.5, 150.3, 154.0, 159.8; HRMS (FAB) calcd
for C28H21N6O (MH+) 457.1777, found 457.1784.
1
1261; H NMR (DMSO-d6 + 3 drops of CF3COOH) δ 1.48 (t,
3H), 3.23 (q, 2H), 7.46-7.61 (m, 3H), 7.79-8.01 (m, 4H), 8.06-
8.28 (m, 4H), 8.45 (dd, 1H, J ) 9.0, 1.0), 8.66 (s, 2H); 13C NMR
(DMSO-d6 + 3 drops of CF3COOH) δ 11.6, 20.3, 111.7, 113.3,
114.6, 115.1, 116.2, 123.6, 125.1, 125.6, 127.5, 128.2, 129.3,
129.4, 131.7, 132.9, 133.3, 133.5, 138.9, 139.7, 140.4, 150.4,
153.5, 158.9; HRMS (FAB) calcd for C29H23N6 (MH+) 455.1985,
found 455.1974.
5-(4-Ch lor op h en yl)-2-[2′-(ben zim id a zol-5′′-yl)ben zim i-
d a zol-5′-yl]ben zim id a zole (20). The crude diamine, which
was obtained by hydrogenation of 16 (177 mg, 0.66 mmol) in
EtOAc (100 mL) using 10% Pd/C (40 mg) for 4 h, with 5 (99
mg, 0.38 mmol) in 5 mL of nitrobenzene provided a 49% yield
of a brownish white solid; mp >280 °C; IR (KBr) 3046, 2820,
1621, 1549, 1426, 1282; 1H NMR (DMSO-d6 + 3 drops of CF3-
COOH) δ 7.56 (d, 2H, J ) 8.5), 7.82 (d, 2H, J ) 8.5), 7.88-
8.12 (m, 6H), 8.48 (d, 1H, J ) 8.5), 8.63 (s, 1H), 8.72 (s, 1H),
9.69 (s, 1H); 13C NMR (DMSO-d6 + 3 drops of CF3COOH) δ
111.8, 113.8, 114.7, 115.8, 116.1, 117.7, 123.0, 124.1, 125.1,
125.2, 125.3, 125.4, 129.2, 129.3, 129.4, 131.9, 132.1, 133.0,
133.1, 137.2, 138.5, 139.3, 141.6, 150.8, 153.8; HRMS (FAB)
calcd for C27H18N6Cl (MH+) 461.1281, found 461.1273.
2-(3,4-Din itr op h en yl)-5-p h en ylben zim id a zole (23). A
stirred solution of 4-phenyl-1,2-phenylenediamine12 (340 mg,
1.9 mmol) and 22 (374 mg, 1.9 mmol) in 10 mL of nitrobenzene
was heated at 145 °C under N2 overnight. The cooled reaction
mixture was then purified directly by column chromatography.
Elution with 10% EtOAc/hexanes provided 455 mg (66%) of a
yellow solid; mp 146 °C; IR (KBr) 3097, 2971, 1608, 1540, 1445,
1365, 1286; 1H NMR (DMSO-d6 + 3 drops of CF3COOH) δ
7.37-7.55 (m, 3H), 7.67-8.79 (m, 3H), 7.85 (d, 1H, J ) 8.5),
7.97 (d, 1H, J ) 1.0), 8.50 (d, 1H, J ) 8.5), 8.71 (dd, 1H, J )
8.5, 2.0), 8.97 (d, 1H, J ) 2.0); 13C NMR (DMSO-d6 + 3 drops
of CF3COOH) δ 113.2, 116.3, 123.8, 124.4, 127.2, 127.2, 127.7,
129.4, 132.2, 133.7, 137.3, 137.4, 138.1, 140.5, 142.5, 142.8,
147.6; HRMS (FAB) calcd for C19H13N4O4 (MH+) 361.0937,
found 361.0935.
5-P h en yl-2-[2′-(2′′-p r op ylben zim id a zol-5′′-yl)ben zim i-
d a zol-5′-yl]ben zim id a zole (27). This was prepared from the
crude diamine derived from 24 (113 mg, 0.24 mmol) and
butyraldehyde (13.8 mg, 0.24 mmol) using 3 mL of nitroben-
zene in a sealed tube overnight. The cooled reaction mixture
was then purified directly by column chromatography. Elution
with 0-20% MeOH/EtOAc provided 45 mg (40%) of a brownish
white solid; mp >280 °C; IR (KBr) 3100, 2961, 2925, 2874,
1436, 1283; 1H NMR (DMSO-d6 + 3 drops of CF3COOH) δ 1.01
(t, 3H), 2.77 (q, 2H), 2.87 (t, 2H), 7.45-7.60 (m, 3H), 7.80 (d,
2H, J ) 7.0), 7.82-8.00 (m, 2H), 8.06-8.14 (m, 3H), 8.25 (d,
1H, J ) 7.0), 8.46 (d, 1H, J ) 9.0), 8.69 (s, 2H); 13C NMR
(DMSO-d6 + 3 drops of CF3COOH) δ 13.5, 20.3, 28.4, 111.7,
113.5, 115.1, 115.8, 115.9, 116.2, 116.6, 123.9, 124.5, 125.2,
125.6, 127.5, 128.2, 129.4, 131.7, 131.9, 132.9, 133.4, 137.6,
138.9, 139.6, 150.3, 153.4, 154.5, 157.1; HRMS (FAB) calcd
for C30H25N6 (MH+) 469.2141, found 469.2132.
5-P h en yl-2-[2′-(2′′-isop r op ylb en zim id a zol-5′′-yl)b en z-
im id a zol-5′-yl]ben zim id a zole (28): prepared from 24 (113
mg, 0.24 mmol) and isobutyraldehyde (13.6 mg, 0.19 mmol)
in 5 mL of nitrobenzene at 145 °C in a sealed tube overnight
in 51% yield, brownish white solid; mp >280 °C; IR (KBr) 3056,
1
2961, 2925, 2867, 1443, 1283; H NMR (DMSO-d6 + 3 drops
of CF3COOH) δ 1.53 (d, 6H, J ) 7.0), 3.54 (q, 1H, J ) 7.0),
7.46-7.61 (m, 3H), 7.79 (d, 2H, J ) 7.0), 7.87-8.00 (m, 2H),
8.04-8.08 (m, 3H), 8.21 (d, 1H, J ) 9.0), 8.46 (d, 1H, J ) 9.0),
8.66 (s, 2H); 13C NMR (DMSO-d6 + 3 drops of CF3COOH) δ
20.2, 27.6, 111.7, 113.1, 114.6, 115.1, 116.1, 116.2, 116.3, 123.2,
123.3, 125.0, 127.5, 128.2, 129.4, 131.7, 131.8, 133.0, 133.2,
138.8, 139.7, 141.2, 149.2, 150.7, 153.8, 161.2; HRMS (FAB)
calcd for C30H25N6 (MH+) 469.2141, found, 469.2154.
5-P h en yl-2-[2′-(2′′-p h en ylben zim id a zol-5′′-yl)ben zim i-
d a zol-5′-yl]ben zim id a zole (29): prepared from 24 (80 mg,
0.17 mmol) and benzaldehyde (15 mg, 0.14 mmol) using 3 mL
of nitrobenzene at 145 °C under N2 overnight to provide a 57%
yield of a brownish white solid; mp >280 °C; IR (KBr) 3056,
2925, 1624, 1436, 1283; 1H NMR (DMSO-d6 + 3 drops of CF3-
COOH) δ 7.44-7.61 (m, 4H), 7.72-8.13 (m, 9H), 8.20-8.41
(m, 4H), 8.66 (s, 2H); 13C NMR (DMSO-d6 + 3 drops of CF3-
COOH) δ 107.4, 111.8, 111.9, 114.1, 114.7, 115.6, 115.7, 116.1,
116.2, 123.5, 124.4, 127.5, 128.2, 129.5, 129.8, 130.2, 132.0,
133.2, 137.1, 138.7, 139.8, 140.4, 143.1, 150.5, 150.8, 152.5,
154.0, 160.7; HRMS (FAB) calcd for C33H23N6O (MH+) 503.1984,
found 503.1982.
5-P h en yl-2-[2′-(3,4-d in itr op h en yl)ben zim id a zol-5′-yl]-
ben zim id a zole (24). Compound 23 (370 mg, 1.03 mmol) was
dissolved in EtOAc (100 mL) and reduced by hydrogenation
using 10% Pd/C (80 mg) for 1.5 h. After passing through a
bed of Celite, the EtOAc was removed in vacuo. The crude
diamine (220 mg, 0.67 mmol) and 22 (131 mg, 0.67 mmol) in
10 mL of nitrobenzene were heated at 145 °C under N2
overnight. The cooled reaction mixture was then purified
directly by column chromatography. Elution with 0-10%
MeOH/EtOAc provided 300 mg (94%) of a yellow solid; mp
>280 °C; IR (KBr) 3065, 2960, 1603, 1540, 1439, 1360, 1280;
1H NMR (DMSO-d6 + 3 drops of CF3COOH) δ 7.46-7.60 (m,
3H), 7.80 (d, 2H, J ) 7.0), 7.87-8.00 (m, 2H), 8.05-8.10 (m,
2H), 8.19 (dd, 1H, J ) 8.5, 2.0), 8.50 (d, 1H, J ) 8.5), 8.66 (s,
1H), 8.77 (dd, 1H, J ) 8.5, 2.0), 9.00 (d, 1H, J ) 2.0); 13C NMR
(DMSO-d6 + 3 drops of CF3COOH) δ 111.6, 114.5, 116.0, 117.0,
117.3, 123.3, 125.6, 127.1, 127.5, 128.2, 129.4, 131.5, 132.3,
132.7, 134.8, 138.8, 139.6, 140.4, 142.3, 142.5, 142.8, 150.5,
150.9; HRMS (FAB) calcd for C26H17N6O4 (MH+) 477.1311,
found 477.1307.
Gen er a l P r oced u r e for P r ep a r in g 2′′-Su bstitu ted Ter -
ben zim id a zoles: 5-P h en yl-2-[2′-(2′′-m eth ylben zim id a zol-
5′′-yl)ben zim id a zol-5′-yl]ben zim id a zole (25). In EtOAc (50
mL) was dissolved 24 (75 mg, 0.16 mmol), which was reduced
by hydrogenation using 10% Pd/C (15 mg) for 1.5 h. After
passing through a bed of Celite and removal of the EtOAc in
vacuo, the crude diamine (63 mg, 0.13 mmol) and acetaldehyde
5-P h en yl-2-[2′-[2′′-(p-m eth oxyp h en yl)ben zim id a zol-5′′-
yl]ben zim id a zol-5′-yl]ben zim id a zole (30): prepared from
the crude diamine derived from 24 (80 mg, 0.17 mmol) and
p-anisaldehyde (22.9 mg, 0.17 mmol) using 3 mL of nitroben-
zene at 145 °C under N2 overnight to provide a 89% yield of a
brownish white solid; mp >280 °C; IR (KBr) 3056, 2933, 1611,