COMMUNICATIONS
R. C. Johnson, R. E. Dickerson, Science 1994, 263, 348 355; b) A.
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608; c) G. Meinke, P. B. Sigler, Nat. Struct. Biol. 1999, 6, 471 477.
[8] A major minor groove DNA-binding ligand made of a hairpin
polyamide and a 11-mer oligonucleotide has been previously descri-
bed: J. W. Szewczyk, E. E. Baird, P. B. Dervan, Angew. Chem. 1996,
108, 1596 1598; Angew. Chem. Int. Ed. 1996, 35, 1487 1489.
[9] C. Zimmer, U. Wahnert, Prog. Biophys. Mol. Biol. 1986, 47, 31 112.
[10] T. E. Ellemberger, C. J. Brandl, K. Struhl, S. C. Harrison, Cell 1992, 71,
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[11] M. Coll, C. A. Frederick, A. H. J. Wang, A. Rich, Proc. Natl. Acad. Sci.
USA 1987, 84, 8385 8389.
[12] The model was constructed by superimposing appropriate base pairs,
by using the INSIGHTII software package on a SGI workstation.
[13] The synthesis of 2 and 1 have been previously communicated: M. E.
Figure 4. Autoradiograms showing the binding of hybrid 5 to 32P-labeled
DNAs. Lanes 1 6: T/CREhs, 5: 0, 7.7, 19, 38, 58, 77 nm respectively;
Lanes 7 11: T/CREhsm, 5: 7.7, 19, 38, 58, 77 nm respectively; lanes 12 14:
CREhs, 5: 38, 77, 154 nm respectively. Binding reactions were performed
over 10 min at 48C using <1 nm labeled DNAs in a binding mixture (20 mL)
containing 20 mm tris(hydroxymethyl)aminomethane (pH 7.5), 100 mm
KCl, 2 mm MgCl2, 2 mm ethylenediaminetetraacetate, 10% glycerol,
0.3 mgmLÀ1 N,O-bovine serum albumin (BSA), and 2% NP-40. The
products were resolved by polyacrylamide gel electrophoresis using a 10%
nondenaturing acrylamide gel and 0.5X TBE (25 mm tris borate and 0.5 mm
EDTA) buffer.
¬
ƒ
ƒ
Vazquez, A. M. Caamano, L. Castedo, D. Gramberg, J. L. Mascarenas,
Tetrahedron Lett. 1999, 40, 3625 3629.
[14] The target site of this sequence does not match exactly with that of the
model, but it was used on the basis of the reported preferred (1:1)
recognition sites for distamycin, see: D. Rentzeperis, L. A. Marky, T. J.
Dwyer, B. H. Geierstanger, J. G. Pelton, D. A. Wemmer, Biochemistry
1995, 34, 2937. See also reference [15].
CREhs: 5'-d(CGACGTCATCGGAGGTCCT)-3'
3'-d(GCTGCAGTAGCCTCCAGGA)-5'
[15] F.-M. Chen, F. Sha, Biochemistry 1998, 37, 11143 11151.
[16] We have calculated an approximate Kd value of 0.8 Æ 0.5mm by CD
titration of compound 2 withthis dsDNA.
makes non-specific electrostatic contacts to the phosphate
groups.[18]
In conclusion, appropriate linking of a b-ZIP basic region to
a minor groove binding tripyrrole allowed for specific binding
to its cognate DNA site. The hybrid compound 5 shows
considerably higher affinity for its designated target DNA
sequence than that of its isolated components for their
respective cognate subsites. Although further refinement of
the design is necessary to obtain compounds with higher
affinities and better specificities, the work described herein
confirms the viability of this new type of major minor groove
DNA-binding molecules.
[17] The synthesis of 5 was carried out by using similar procedures as for
the synthesis of 1, and is described in the Supporting Information.
Electrospray mass spectrometry: m/z [MH ] found: 3271.4; calcd:
3270.8.
[18] A related mode of interaction has been previously observed with
¬
microgonotropens, see: D. Sengupta, A. Blasko, T. C. Bruice, Biorg.
Med. Chem. 1996, 4, 803 813, and references therein.
Received: July 23, 2001 [Z17576]
Solid-Phase Capture Release Strategy
Applied to Oligosaccharide Synthesis on a
Soluble Polymer Support**
[1] For reviews on DNA-binding proteins, see: a) C. O. Pabo, R. T. Sauer,
Annu. Rev. Biochem. 1992, 61, 1053 1095; b) S. K. Burley, Curr. Opin.
Struct. Biol. 1994, 4, 3 11; c) B. Alberts, D. Bray, J. Lewis, M. Raff, K.
Roberts, J. D. Watson, Molecular Biology of the Cell, Garland
Publishing, New York, 1994, chap. 9; d) C. Branden, J. Tooze,
Introduction to Protein Structure, Garland Publishing, New York,
1999, chap. 8 10; e) D. S. Latchman, Eukaryotic Transcription Fac-
tors, Academic Press, London, 1998, chap. 8; f) N. M. Luscombe, S. E.
Austin, H. M. Berman, J. M. Thornton, Genome Biology 2000, 1, 1
37.
Hiromune Ando, Shino Manabe, Yoshiaki Nakahara,
and Yukishige Ito*
Advances in the techniques for oligosaccharide synthesis
have lagged behind those for other classes of biological
oligomers. For the preparation of oligopeptides and oligo-
[2] H. C. Hurst, Protein Profile 1996, 3, 1 72.
[3] a) R. V. Talanian, C. J. McKnight, P. S. Kim, Science 1990, 249, 769
771; b) B. Cuenoud, A. Shepartz, Science 1993, 259, 510 513; c) T.
Morii, M. Shimomura, M. Morimoto, I. Saito, J. Am. Chem. Soc. 1993,
115, 1150 1151; d) T. Morii, Y. Saimei, M. Okagami, K. Makino Y.
Sugiura, J. Am. Chem. Soc. 1997, 119, 3649 3655; e) Y. Aizawa, Y.
Sugiura, T. Morii, Biochemistry 1999, 38, 1626 1632.
[*] Dr. Y. Ito, Dr. H. Ando, Dr. S. Manabe
RIKEN (The Institute of Physical and Chemical Research)
and CREST, Japan Science and Technology Corporation (JST)
2
1 Hirosawa, Wako-shi, Saitama 351-0198 (Japan)
Fax : (81)48-462-4680
[4] The use of an azobenzene as a dimerizing unit allows the DNA affinity
of the peptides to be photomodulated: A. M. Caamanƒo, M. E.
Prof. Dr. Y. Nakahara
Department of Applied Biochemistry, Tokai University
and CREST, JST
¬
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Vazquez, J. MartÌnez-Costas, L. Castedo, J. L. Mascarenas, Angew.
Chem. 2000, 112, 3234 3237; Angew. Chem. Int. Ed. 2000, 39, 3104
3107.
Kitakaname 1117, Hiratsuka-shi, Kanagawa 259-1292 (Japan)
[**] This work was supported in part by the Mizutani Foundation for
Glycoscience (grant to Y.I.), the RIKEN Presidential Fund (grant to
S.M.), and the Ministry of Education, Culture, Sports, Science and
Technology (Grant-in-Aid for Scientific Research to S.M.). We thank
Dr. Teiji Chihara and his staff for the elemental analyses, Ms. Yasuko
Tanaka for her contribution at the exploratory stage of this work, and
Ms. Akemi Takahashi for her technical assistance.
[5] Recently Zondlo and Shepparzt have developed a smart strategy for
achieving monovalent DNA recognition which is based on grafting the
DNA-binding residues into the helix of an aPP protein: a) N. J.
Zondlo, A. Schepartz, J. Am. Chem. Soc. 1999, 121, 6938 6939;
b) J. W. Chin, A. Schepartz, J. Am. Chem. Soc. 2001, 123, 2929 2930.
[6] D. Stanojevic, G. L. Verdine, Nat. Struct. Biol. 1995, 2, 450 457.
[7] This system would somewhat mimick the mode of recognition of a
number of transcription factors that bind DNA by interacting with
boththe major and minor grooves. See for example: a) J.-A. Feng,
Supporting information for this article is available on the WWW under
Angew. Chem. Int. Ed. 2001, 40, No. 24
¹ WILEY-VCH Verlag GmbH, D-69451 Weinheim, 2001
1433-7851/01/4024-4725 $ 17.50+.50/0
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