Oligosaccharide Dendrimers
1244±1254
(CDCl3, 258C): d 25.3, 26.0, 29.0, 29.4, 40.7, 62.5, 62.7, 66.4, 68.9, 69.1, 69.4,
10 min, the reaction mixture was neutralized with C5H5N, diluted with
CH2Cl2 (20 mL) and worked up according to the procedure already
described for 13. Purification of the crude product by medium-pressure
liquid chromatography (SiO2:PhMe/EtOAc, 9:1 ± 85:15) gave the tetrasac-
charide 20 (135 mg, 30%). [a]D 43 (c 1 in CHCl3); LSIMS: m/z
71.2, 71.8, 72.2, 72.4, 72.8, 75.6, 84.1, 84.9, 101.2, 128.0 ± 133.4, 163.7, 163.9,
164.8, 165.1, 165.5, 166.0; HRLSIMS: calcd for C108H101NNaO33 [MNa]
1962.6154; observed m/z 1962.6172.
6-Benzyloxycarbonylaminohexyl 2-O-benzoyl-3,6-di-O-[2-O-benzoyl-3,6-
di-O-(2,3,4,6-tetra-O-benzoyl-b-d-glucopyranosyl)-b-D-gluco-pyranosyl]-
2172 [MNa] ; 1H NMR (CDCl3, 258C): d 1.15 ± 1.55 (brm, 8H), 2.46 ±
2.52 (m, 1H), 2.69 ± 2.75 (m, 1H), 3.15 ± 3.21 (m, 3H), 3.24 ± 3.28 (m, 2H),
3.45 (pt, 1H, J 9.0 Hz), 3.50 ± 3.56 (m, 2H), 3.67 ± 3.74 (m, 1H), 4.06 (d,
1H, J 8.0 Hz), 4.09 ± 4.18 (m, 3H), 4.22 ± 4.28 (m, 2H), 4.37 (dd, 1H, J
3.5, 12.5 Hz), 4.47 (dd, 1H, J 5.0, 12.0 Hz), 4.50 (d, 1H, J 8.0 Hz), 4.62
(d, 1H, J 8.0 Hz), 4.64 (dd, 1H, J 3.5, 12.0 Hz), 5.00 (d, 1H, J 8.0 Hz),
5.07 (s, 2H), 5.28 (brs, 1H), 5.38 ± 5.47 (m, 3H), 5.53 (dd, 1H, J 8.0,
10.0 Hz), 5.55 (dd, 1H, J 8.0, 10.0 Hz), 5.63 (pt, 1H, J 10.0 Hz), 5.69 (pt,
1H, J 10.0 Hz), 5.79 (pt, 1H, J 10.0 Hz), 5.88 (pt, 1H, J 10.0 Hz),
7.14 ± 8.31 (m, 65H); 13C NMR (CDCl3, 258C): d 25.8, 26.5, 29.3, 30.0,
41.2, 62.0, 63.0, 68.5, 69.1, 69.2, 69.6, 69.7, 70.9, 72.0, 72.1, 72.5, 73.0, 75.3,
77.3, 85.5, 99.9, 100.1, 101.0, 101.7, 127.9 ± 136.9, 156.5, 164.7, 164.9, 165.0,
165.2, 165.7, 165.8, 165.9, 166.1; HRLSIMS: calcd for C122H109NNaO35
b-d-glucopyranoside (15):
A catalytic amount of TfOH (1.6 mL,
0.017 mmol) was added to a mixture of the tetrasaccharide 14 (93 mg,
0.048 mmol), the trisaccharide 7 (83 mg, 0.052 mmol), and NIS (23 mg,
0.104 mmol) in dry CH2Cl2 (5 mL) under an atmosphere of N2 at 08C. The
reaction micture was allowed to warm up to RT, before being neutralized
with C5H5N and worked up as described for the preparation of 13.
Repeated medium-pressure liquid chromatography (SiO2:PhMe/EtOAc,
85:15) on the crude product afforded the pure heptasaccharide 15 (56 mg,
28%). [a]D
7.5 (c 2 in CHCl3); LSIMS: m/z 3387 [MNa] ; 1H
NMR (CDCl3, 258C): d 3.89 (d, J 9.0 Hz), 4.29 (d, J 8.0 Hz), 4.34 (d,
J 8.0 Hz), 4.61 (d, J 8.0 Hz), 4.81 (d, J 8.0 Hz), 4.98 (d, J 8.0 Hz),
5.05 (d, J 8.0 Hz); 13C NMR (CDCl3, 258C): d 24.3, 25.2, 28.0, 28.5, 28.8,
39.8, 59.4, 61.6, 62.0, 65.5, 67.2, 67.4, 67.7, 68.2, 68.4, 68.5, 68.9, 69.4, 69.7, 70.3,
70.4, 70.9, 71.0, 71.1, 71.2, 71.5, 71.6, 71.5, 71.9, 72.0, 73.6, 74.3, 74.5, 82.7,
84.1, 84.8, 99.6, 99.8, 100.1, 100.4, 100.7, 100.8, 126.2 ± 133.0, 136.8, 155.3,
162.7, 162.8, 163.1, 163.9, 164.0, 164.1, 164.2, 164.3, 164.6, 164.8, 165.0, 165.1,
[MNa] 2170.6678; observed m/z 2170.6789.
Dendrimer 23: The N-benzyloxycarbonyl derivative 20 (93 mg,
0.043 mmol) was subjected to hydrogenolysis over 10% Pd/C (25 mg) in
EtOH/CH2Cl2, 2:1 (25 mL) at 358C for 4 days. The catalyst was filtered off
through a layer of Celite and the filtrate was concentrated to afford 21
(73 mg, 84%), a portion of which (46 mg, 0.023 mmol) was then added to a
solution of 1,3,5-benzenetricarbonyl chloride (22; 1.9 mg, 0.007 mmol) and
Et3N (3.3 mL, 0.023 mmol) in CH2Cl2 (5 mL) under an atmosphere of N2.
The reaction mixture was stirred at RT for 6 h and then subjected to column
chromatography (SiO2:PhMe/EtOAc, 7:3) to afford the dendrimer 23
165.2; HRLSIMS: calcd for C189H167NNaO57 [MNa] 3385.0098; observed
m/z 3385.0103.
6-Benzyloxycarbonylaminohexyl 4,6-O-benzylidene-2,3-di-O-(2,3,4,6-tet-
ra-O-benzoyl-b-d-glucopyranosyl)-b-d-glucopyranoside (18): A catalytic
amount of TfOH (105 mL, 1.2 mmol) was added slowly to a solution of the
diol 11 (740 mg, 1.48 mmol), and the thioglycoside 17 (2.23 g, 3.58 mmol)
and NIS (1.6 g, 7.1 mmol) in dry CH2Cl2 (80 mL) under a N2 atmosphere at
RT. The reaction mixture was neutralized after 10 min with C5H5N before
being worked up as described for the tetrasaccharide derivative 13. The
trisaccharide 18 was isolated (1.35 g, 55%) following medium-pressure
liquid chromatography (SiO2:PhMe/EtOAc 95:5 to 88:12). [a]D 33 (c
(9 mg, 20%). MALDI-TOF m/z 6230 [MNa] ; 1H NMR (CDCl3,
258C): d 1.05 ± 1.70 (brm, 24H), 2.47 ± 2.53 (m, 3H), 2.66 ± 2.72 (m, 3H),
3.12 ± 3.16 (m, 3H), 3.24 ± 3.28 (m, 12H), 3.44 (pt, 3H, J 9.0 Hz), 3.48 ±
3.55 (m, 6H), 3.67 ± 3.72 (m, 3H), 4.07 (d, 3H, J 8.0 Hz), 4.10 ± 4.18 (m,
9H), 4.22 ± 4.28 (m, 6H), 4.36 (dd, 3H, J 3.5, 12.5 Hz), 4.46 (pt, 3H, J
5.0 Hz), 4.49 (d, 3H, J 8.0 Hz), 4.61 (d, 3H, J 8.0 Hz), 4.63 (dd, 3H, J
3.5, 12.0 Hz), 4.99 (d, 3H, J 8.0 Hz), 5.30 (s, 3H), 5.38 ± 5.44 (m, 9H), 5.52
(dd, 3H, J 8.0, 10.0 Hz), 5.54 (dd, 3H, J 8.0, 10.0 Hz), 5.62 (pt, 3H, J
10.0 Hz), 5.67 (pt, 3H, J 10.0 Hz), 5.77 (pt, 3H, J 10.0 Hz), 5.87
(pt, 3H, J 10.0 Hz), 7.13 ± 8.01 (m, 180H), 8.23 (t, 3H, J 8.0 Hz),
8.29 (s, 3H).
1 in CHCl3); MALDI-TOF: m/z 1681 [MNa] ,1696 [MK] ; 1H NMR
(CDCl3, 258C): d 1.20 ± 1.55 (brm, 8H), 2.66 ± 2.82 (m, 2H), 3.13 ± 3.24
(m, 2H), 3.25 ± 3.35 (m, 1H), 3.43 ± 3.53 (m, 1H), 3.60 (pt, 1H, J 9.0 Hz),
3.65 ± 3.76 (m, 2H), 3.80 (pt, 1H, J 9.0 Hz), 3.95 (dd, 1H, J 8.0, 9.0 Hz),
4.16 ± 4.36 (m, 5H), 4.39 (d, 1H, J 8.0 Hz), 4.75 (d, 1H, J 8.0 Hz), 4.86
(d, 1H, J 8.0 Hz), 5.08 (s, 2H), 5.19 (brs, 1H), 5.44 (dd, 1H, J 8.0,
9.0 Hz), 5.45 ± 5.53 (m, 3H), 5.58 (dd, 1H, J 8.0, 9.0 Hz), 5.80 (pt, 1H, J
9.0 Hz), 5.82 (pt, 1H, J 9.0 Hz), 7.12 ± 8.28 (m, 50H); 13C NMR (CDCl3,
258C): d 25.7, 26.5, 29.4, 30.0, 41.1, 63.0, 63.4, 66.0. 66.6, 68.7, 69.7, 70.0,
70.1, 71.1, 72.3, 72.5, 72.6, 72.9, 78.4, 78.7, 80.0, 99.8, 100.0, 101.1, 101.8,
125.2 ± 137.2, 156.4, 164.9, 165.0, 165.1, 165.2, 165.7, 165.8, 165.9;
C95H87NO26: calcd C 68.79, H 5.29, N 0.84; found C 68.79, H 5.26,
N 0.67.
Dendrimer 25: Hydrogenolysis of the heptasaccharide 15 (56 mg,
0.017 mmol) in the presence of 10% Pd/C (50 mg) in MeOH/CH2Cl2, 2:1
(30 mL) at 358C over 18 hours afforded the amine 16 (42 mg, 77%,
MALDI-TOF: m/z 3252 [MNa] ), which was isolated as described for
21. Compound 16 (42 mg, 0.013 mmol) was then added to a solution of
DCC (2.62 mg, 0.013 mmol), HOBT (1.71 mg 0.013 mmol), and 24[9a]
(1.51 mg, 0.004 mmol) in CH2Cl2/DMF, 2:1 (30 mL) under an atmosphere
of N2 at RT. After 14 days, the solvent was evaporated in vacuo and the
residue was subjected to GPC (Phenomenex column, THF); this resulted in
isolation of three compounds (Figure 1): I) the 21-mer 25 (10.1 mg, 8%),
GPC retention time 15.0 min, II) the product corresponding to bisfunc-
tionalization of the core, GPC retention time 16.1 min, and III) the starting
compound 16, GPC retention time 17.7 min. Dendrimer 25: MALDI-TOF:
6-Benzyloxycarbonylaminohexyl
2,3-di-O-(2,3,4,6-tetra-O-benzoyl-b-d-
glucopyranosyl)-b-d-glucopyranoside (19): The trisaccharide derivative
18 (1.35 g, 0.81 mmol) was treated with 90% aqueous CF3CO2H (5 mL) in
CH2Cl2 (25 mL) for 10 min at RT. The reaction mixture was then diluted
with CH2Cl2 (75 mL), washed with an aqueous NaHCO3 (3 Â 75 mL) and
H2O (2 Â 50 mL) before the organic layer was dried and concentrated.
Column chromatography of the residue (SiO2:PhMe/EtOAc, 7:3 to 6:4)
afforded the diol 19 (1.23 g, 96%). [a]D 59 (c 1 in CHCl3); MALDI-
m/z 10042 [MNa] ; 1H NMR (CDCl3, 258C): d 3.90 (d, J 9.0 Hz),
4.29 (d, J 8.0 Hz), 4.35 (d, J 8.0 Hz), 4.61 (d, J 8.0 Hz), 4.82 (d, J
8.0 Hz), 4.98 (d, J 8.0 Hz), 5.06 (d, J 8.0 Hz). Bisfunctionalized core
TOF: m/z 1592 [MNa] ,1607 [MK] ; 1H NMR (CDCl3, 258C): d
1.12 ± 1.55 (brm, 8H), 2.39 ± 2.49 (m, 1H), 2.65 ± 2.75 (m, 1H), 3.09 ± 3.25
(brm, 3H), 3.39 ± 3.45 (m, 1H), 3.47 (pt, 1H, J 9.0 Hz), 3.55 (pt, 1H, J
9.0 Hz), 3.64 (dd, 1H, J 7.5, 9.0 Hz), 3.66 ± 3.76 (m, 2H), 3.87 (dd, 1H, J
3.5, 12.0 Hz), 4.09 ± 4.25 (m, 3H), 4.27 (d, 1H, J 7.5 Hz), 4.39 (dd, 1H, J
2.5, 12.5 Hz), 4.52 (d, 1H, J 8.0 Hz), 4.64 (d, 1H, J 8.0 Hz), 5.08 (s, 2H),
5.14 (brs, 1H), 5.38 ± 5.59 (m, 4H), 5.64 (pt, 1H, J 10.0 Hz), 5.80 (pt, 1H,
J 10.0 Hz), 7.22 ± 8.33 (m, 45H); 13C NMR (CDCl3, 258C): d 25.9, 26.7,
29.6, 30.2, 41.4, 62.3, 63.0, 63.1, 66.5, 69.3, 69.7, 69.9, 71.3, 72.3, 72.8, 73.3,
75.5, 78.0, 85.7, 100.2, 100.4, 101.5, 128.1 ± 137.1, 156.8, 165.0, 165.2, 165.4,
166.0, 166.1; C88H83NO26: calcd C 67.30, H 5.33, N 0.89; found C 67.13, H
5.32, N 0.63.
derivative: MALDI-TOF: m/z 6833 [MNa] ; the starting compound 16
MALDI-TOF: m/z 3268 [MNa] .
Molecular modeling: The 12-mer and 21-mer dendrimers 23 and 25,
respectively, were constructed individually within the input mode of
Macromodel5.0.[27] Subsequently, the geometries were optimized by energy
minimization performed on each structure using the Polak ± Ribiere
conjugate gradient (PRCG) algorithm,[30] the AMBER* forcefield,[28] and
the generalized Born surface area (GB/SA) solvation model[29] for CHCl3,
as implemented in Macromodel5.0. Then the lowest energy conformations
were searched for by molecular dynamics with stepwise simulated
annealing performed on each individual structure in one step of 10 ps,
followed by two steps of 20 ps in conjunction with the PRCG method, the
AMBER* forcefield, and the GB/SA for CHCl3. The simulated temper-
ature was decreased from 300 to 150, and finally to 50 K, with a bath
constant of 5.0 ps applied at all steps. The time step was maintained at 1.5 fs
in the first two steps and increased to 2.0 fs in the final step.
6-Benzyloxycarbonylaminohexyl 2,3,6-tri-O-(2,3,4,6-tetra-O-benzoyl-b-d-
glucopyranosyl)-b-d-glucopyranoside (20): A catalytic amount of TfOH
(15 mL, 0.17 mmol) was added to a solution of the diol 19 (330 mg,
0.21 mmol), the thioglycoside 12 (314 mg, 0.50 mmol), and NIS (225 mg,
1.00 mmol) in dry CH2Cl2 (30 mL) under an atmosphere of N2 at RT. After
Chem. Eur. J. 1998, 4, No. 7
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