Purpurinimides and Bacteriopurpurinimides
Journal of Medicinal Chemistry, 2007, Vol. 50, No. 8 1763
(1.53 × 105), 363.9 (5.20 × 104). 1H NMR (400 MHz, 3 mg/1 mL
CDCl3, δ ppm): 9.80 and 9.57 (each s, 1H, for 10H and 5H), 8.58
(s, 1H, for 20H), 8.29 (s, 2H, 2 × ArH), 7.86 (s, 1H, ArH), 5.75-
5.93 (m, 3H, N-CH2Ar and 31H), 5.40 (d, J ) 7.6 Hz, 1H, 17H),
4.40 (q, J ) 7.2 Hz, 1H, 18H), 3.78 (s, 3H, 12CH3), 3.62-3.75
(m, 4H, 81CH2, OCH2C6H13), 3.60 (s, 3H, 172CO2CH3), 3.36 (s,
3H, 7CH3), 3.23 (s, 3H, 2CH3), 2.66-2.80 (m, 1H, 1 × 172H),
2.35-2.52 (m, 2H, 2 × 171H), 2.10 (m, 3H, 31CH3), 1.96-2.07
(m, 1H, 1 × 172H), 1.84 (d, J ) 6.8 Hz, 3H, 18CH3), 1.75-1.81
(m, 2H, OCH2CH2(CH2)4CH3), 1.69 (t, J ) 7.4 Hz, 3H, 82CH3),
1.35-1.55 (m, 2H, O(CH2)2CH2(CH2)3CH3), 1.15-1.34 (m, 6H,
O(CH2)3(CH2)3CH3), 0.83 (m, 3H, O-(CH2)6CH3), 0.18 (br s, 1H,
NH), 0.09 (br s, 1H, NH). 19F NMR (400 MHz, 3 mg/1 mL of
CDCl3, in reference to TFA, δ ppm): 13.03. Mass calculated for
C50H55N5O5F6, 919.41; found, 942.4 (M + Na). HRMS calculated
(M + 1), 920.4185; found, 920.4167 (M + 1).
N2 gas. During this time, the long wavelength absorption shifted
from 699 to 666 nm. The solvent was removed and hexane was
added to the dried reaction mixture, and after 2 h in the freezer,
the recovered 1 was collected via filtration and the residue was
washed with excess hexane. The crystals were transferred back to
the reaction flask, dissolved in 10 mL of CH2Cl2/THF (1:1), and
treated with diazomethane. The intermediate were cyclized to the
corresponding cyclic imide on reacting with a catalytic amount of
KOH/MeOH solution for 4-5 min with vigorous stirring, and the
reaction was monitored by UV-vis spectroscopy (appearance of a
new peak at 706 nm). The reaction mixture was washed with 2%
acetic acid in water to neutralize the KOH and washed again with
water (3 × 250 mL). The solvent was removed and purified on a
silica column using a 3% MeOH in CH2Cl2 as an eluent (yield:
111 mg, 84.7%). UV-vis (ꢀ ) 58 000 at 706 nm in THF): 549.0
(2.51 × 104), 510.9 (6.33 × 103), 419.0 (1.75 × 105), 368.0 (6.05
× 104). 1H NMR (400 MHz, 3 mg/1 mL of CDCl3, δ ppm): 9.47
(s, 1H, 10H), 9.23 (s, 1H, 5H), 8.55 (s, 1H, 20H), 7.82 (dd, J )
18.0, 11.7, 1H 31CHdCH2), 6.24 (d, J ) 18.0, 1H, 31CHdCH2),
6.10 (d, J ) 11.7, 1H, 31CHdCH2), 5.40 (m, 1H, 171H), 4.46 (m
2H, NCH2CH2CH2CH3), 4.35 (q, J ) 7.3, 1H, 18H), 3.76 (s, 3H,
12CH3), 3.57 (s, 3H, 172CO2CH3), 3.54 (q, J ) 7.8, 2H, 81CH2-
CH3), 3.32 (s, 3H, 2CH3), 3.06 (s, 3H, 7CH3), 2.62-2.75 (m, 1H,
172CH2), 2.30-2.50 (m, 2H, 171CH2), 1.95-2.05 (m, 3H, 172CH2
and NCH2CH2CH2CH3), 1.78 (d, J ) 7.0, 3H, 18CH3), 1.58-1.70
(m, 5H, 81CH2CH3 and NCH2CH2CH2CH3), 1.12 (t, J ) 6.3, 3H,
NCH2CH2CH2CH3), -0.18 (br s, 1H, NH), -0.28 (br s, 1H, NH).18
3-Devinyl-3-[11-3,5-bis(dimethyl)benzyl]ethyl-purpurin-18-N-
butylimide (13). Further reaction of 12 with HBr/acetic acid
followed by addition of commercially available 3,5-dimethylbenzyl
alcohol with K2CO3 and CH2Cl2 gave the corresponding N-butyl
derivative 13. The crude product was purified on preparative silica
plate using 80:20 hexane/ethyl acetate. Each of these nonfluorinated
analogs maintained a Log P value of 9.43. UV-vis (ꢀ ) 53 600 at
698 nm in THF): 639.0 (8.08 × 103), 543.0 (2.10 × 104), 507.0
(8.37 × 103), 478.0 (5.20 × 103), 415.1 (1.46 × 105), 364.0 (4.97
× 104). 1H NMR (400 MHz, 3 mg/1 mL of CDCl3, δ ppm): 9.79
and 9.63 (each s, 1H, for 10H and 5H), 8.60 (s, 1H, for 20H), 7.79
(s, 1H, ArH), 6.96 (m, 2H, 2 × ArH), 5.91 (m, 1H, 31H), 5.44 (m,
1H, 17H), 4.57 (s, 2H, OCH2Ar), 4.49 (t, J ) 7.8 Hz, 2H,
N-CH2C3H7), 4.39 (m, 1H, 18H), 3.82 (s, 3H, 12CH3), 3.66 (q, J
) 7.6 Hz, 2H, 81CH2), 3.58 (s, 3H, 172CO2CH3), 3.34 (s, 3H,
7CH3), 3.12 (s, 3H, 2CH3), 2.70 (m, 1H, 1 × 172H), 2.46 (m, 1H,
1 × 172H), 2.20-2.40 (m, 1H, 1 × 171H), 2.25 (s, 6H, 2 ×
Ar-CH3), 2.12 (d, J ) 6.4 Hz, 3H, 32CH3), 2.00-2.05 (m, 3H, 1
× 172H and NCH2CH2CH2CH3), 1.80 (d, J ) 6.8, 3H, 8CH3),
1.62-1.70 (m, 5H, 82CH3 and N-CH2CH2CH2CH3), 1.12 (t, J )
7.4 Hz, 3H, N-CH2CH2CH2CH3), -0.09 (br s, 1H, NH), -0.14
(br s, 1H, NH). Mass calculated for C47H55N5O5, 769.42; found,
769/770 (M). HRMS calculated, 769.4209; found, 789.4234.
3-Devinyl-3-[11-3,5-bis(trifluoromethyl)benzyl]ethyl-purpurin-
18-N-butylimide (14). Compound 12 (111 mg, 0.18 mmol) was
reacted with ∼2.5 mL of 30% HBr in acetic acid for ∼1.5 h. The
excess acetic acid was removed via high vacuum (∼45 min). To
the dry residue was added the commercially available 3,5-bis-
(trifluoromethyl) benzyl alcohol (∼400 mg, 1.6 mmol), 28 mg of
anhydrous K2CO3, and ∼3 mL of CH2Cl2. The reaction was stirred
at RT under argon for ∼3 h. At completion (shift from 708 f 701
nm), the reaction mixture was washed with water and CH2Cl2, and
the organic layer was collected, dried over Na2SO4, and filtered.
The filtrate was rotovaporated to dryness, and the crude product
was purified on analytical silica prep plates using the 1.5% MeOH
in CH2Cl2 solvent system (yield: 13.8 mg, 10%). Log P ) 10.91.
UV-vis (ꢀ ) 58 000 at 700 in THF): 642.0 (7.66 × 103), 543.0
(2.16 × 104), 507.0 (8.19 × 103), 479.1 (4.75 × 103), 415.1 (1.51
3-Devinyl-3-(11-dodecyoxyethyl)-purpurin-18-N-3,5-bis(tri-
fluoromethyl)benzylimide (10). Compound 5 (204 mg, 0.25 mmol)
was reacted with 3 mL of 30% HBr in acetic acid for ∼2 h. The
excess acetic acid was removed via high vacuum (∼30 min),
yielding a dark green/purple residue. To the dry residue was added
100 mg of dry K2CO3, 1-1.5 mL of n-dodecanol, and 3 mL of dry
CH2Cl2. The reaction was stirred at RT under N2 gas for ∼1 h. At
completion, the reaction mixture was washed with water and
CH2Cl2, and the organic layer was collected, dried over Na2SO4,
and filtered. The filtrate was concentrated under vacuum to yield
a dark purple crude material. The excess dodecanol was aziotroped
with water. Initially, the compound was purified on a silica column
and then on an alumina column with CH2Cl2 as the solvent system
to help remove the remaining alcohol. The filtrate was collected,
rotavaporated to dryness, and additionally purified on silica prep
plates using a hexane/ethyl acetate (80:20) solvent system. Due to
the excessive purification demands, the percent yield of this
compound was lower compared to the other fluorinated purpurin-
imides (yield: 25.8 mg, 10.4%). Log P ) 14.67. UV-vis (ꢀ )
58 000 at 700 nm in THF): 643.0 (9.45 × 103), 544.0 (2.53 ×
104), 508.0 (8.66 × 103), 478.0 (5.77 × 103), 416.0 (1.60 × 105),
1
363.9 (5.42 × 104). H NMR (400 MHz, 3 mg/1 mL of CDCl3, δ
ppm): 9.81 and 9.53 (each s, 1H, for 10H and 5H), 8.6 (s, 1H, for
20H), 8.30 (s, 2H, 2 × ArH), 7.87 (s, 1H, ArH), 5.77 (m, 3H,
N-CH2Ar and 31H), 5.41 (d, J ) 6.9 Hz, 1H, 17H), 4.42 (m, 1H,
18H), 3.75 (s, 3H, 12CH3), 3.63-3.69 (m, 4H, OCH2C11C23,
81CH2), 3.61 (s, 3H, 172CO2CH3), 3.36 (s, 3H, 7CH3), 3.22 (s, 3H,
2CH3), 2.65-2.83 (m, 1H, 1 × 172H), 2.35-2.53 (m, 2H, 2 ×
171H), 2.12 (m, 3H, 31CH3), 1.96-2.07 (m, 1H, 1 × 172H), 1.85
(m, 3H, 18CH3), 1.74-1.82 (m, 2H, OCH2CH2(CH2)9CH3), 1.12-
1.54 (m, 18H, OCH2CH2(CH2)9CH3), 0.89 (m, 3H, O-(CH2)11CH3),
0.16 (br s, 1H, NH), 0.09 (br s, 1H, NH). 19F NMR (400 MHz, 3
mg/1 mL of CDCl3, in reference to TFA, δ ppm): 13.17. Mass
calculated for C55H66N5O5F6, 989.49; found, 1012.6 (M + Na).
HRMS calculated (M + 1), 990.4968; found, 990.4994 (M + 1).
3-Devinyl-3-(11-heptoxyethyl)-purpurin-18-N-3,5-dimethyl-
benzylimide (11). By following similar reaction conditions dis-
cussed for compound 6, compound 4 was reacted with HBr in acetic
acid, n-heptanol, and K2CO3 in CH2Cl2 to produce 11, which is
the nonfluorinated structural analog of 8 with similar lipophilicity.
Log P ) 11.00. UV-vis (ꢀ ) 53 600 at 698 nm in THF): 543.0
(1.63 × 104), 508.0 (2.18 × 103), 414.9 (1.52 × 105), 363.9 (4.17
× 104). 1H NMR (400 MHz, 3 mg/1 mL of CDCl3, δ ppm): 9.76
and 9.66 (each s, 1H for 5-H and 10-H), 8.54 (s, 1H, 20-H), 7.33
(s, 2H, 2 × ArH), 6.90 (s, 1H, 1 × ArH), 5.81-5.76 (m, J ) 6.8
Hz, 1H, 31CH), 5.68-5.58 (m, J ) 10.9, 2H, N-CH2Ar), 5.44 (d,
2H), 3.85 (s, 4H), 3.71-3.65 (m, 4H, 81CH2 and 31OCH2), 3.54
(s, 3H, 172CO2CH3), 3.50 (s, 2H), 3.31 (s, 3H, 7CH3), 3.20 (s, 4H),
2.32 (s, 11H), 2.17 (s, 9H), 2.06 (dd, 4H), 1.69 (t, J ) 7.3 Hz,
5H), 1.53 (s, 20H), 1.10 (t, J ) 6.8 Hz, 2H), 0.778 (m, 4H), -0.015
(br s, 1H, 2 × NH). Mass calculated for C50H61N5O5, 811.47; found,
835.5 (M + Na). HRMS calculated, 812.4751; found, 812.4746.
Purpurin-18-N-butylimide (12). Compound 1 (120 mg, 0.21
mmol) was reacted with 1 mL of n-butylamine (30.7 mg, 0.42
mmol) while stirring at RT in 10 mL of CH2Cl2 for ∼24 h under
1
× 105), 365.0 (5.21 × 104). H NMR (400 MHz, 3 mg/1 mL of
CDCl3, δ ppm): 9.73 and 9.68 (each s, 1H, for 10H and 5H), 8.60
(s, 1H, for 20H), 7.85 (s, 2H, 2 × ArH), 7.81 (s, 1H, ArH), 5.96
(q, J ) 6.8 Hz, 1H, 31H), 5.43 (d, J ) 8.0 Hz, 1H, 17H), 4.79 (s,
2H, O-CH2Ar), 4.48 (t, J ) 7.8 Hz, 2H, N-CH2C3H7), 4.38 (q, J
) 7.2 Hz, 1H, 18H), 3.86 (s, 3H, 12CH3), 3.69 (q, J ) 7.6 Hz, 2H,