2532 Journal of Medicinal Chemistry, 2006, Vol. 49, No. 8
Lager et al.
starting from 22a. The reaction yielded 22 (45%), a white solid
(mp: 271-273 °C). Anal. (C13H12NO3Br) C, H, N.
6-Ethyl-3-propylaminocarbonyl-4-quinolone (23) was prepared
and purified according to the procedure described for 7, using
n-propylamine as solvent and reacting amine. The reaction yielded
23 (64%), a white solid (mp: 205-207 °C). Anal. (C15H18N2O2)
C, H, N.
3-Butylaminocarbonyl-6-ethyl-4-quinolone (24) was prepared
and purified according to the procedure described for 7, using
n-butylamine as solvent and reacting amine. The reaction yielded
24 (92%), a white solid (mp: 180-182 °C). Anal. (C16H20N2O2)
C, H, N.
6-Benzyl-3-propylaminocarbonyl-4-quinolone (25) was pre-
pared and purified according to the procedure described for 7, using
n-propylamine as solvent and reacting amine. The reaction yielded
25 (76%), a white solid (mp: 209-211 °C). Anal. (C20H20N2O2)
C, H, N.
Propyl 2-methyl-7-oxo-4,7-dihydropyrazolo[1,5-a]pyrimidine-
6-carboxylate (27) was prepared according to the procedure
described for 7, starting from 26 and using n-propanol as solvent
and reacting alcohol. The crude product was purified by chroma-
tography (CH2Cl2:MeOH 8:1) yielding 27 (quantitative yield), a
white solid (mp: 267-269 °C). Anal. (C11H13N3O3) C, H, N.
Ethyl 7-Oxo-4,7-dihydropyrazolo[1,5-a]pyrimidine-6-carbox-
ylate (28). 3-Aminopyrazole (432 mg, 5.2 mmol) was dissolved in
diethyl ethoxymethylenemalonate (1.12 g, 5.2 mmol) and heated
at 200 °C for 10 min. The crude product was purified by
recrystallization from DMF and filteration on silica (CH2Cl2:EtOH
10:1), yielding 28 (630 mg, 3.04 mmol, 58.5%), a white solid
(mp: 295-296 °C). Anal. (C9H9N3O3) C, H, N.
method21 with the default setting as implemented in MacroModel
7.0.22 Force field calculations were carried out using the MMFF94s
force field23 with solvation effects calculated by the GB/SA
hydration model.24 The energy minimizations were carried out using
the Polak-Ribiere conjugate gradient algorithm (PRCG) as imple-
mented in MacroModel 7.0. LogP calculations were performed by
using the ClogP algorithm as implemented in ChemDrawUltra
version 8.0.3 (CambridgeSoft). The free energies of hydration for
compounds 14 and 27 were calculated by using AM1/SM220 as
implemented in Spartan 02 for Macintosh (Wavefunction, Inc.)
Acknowledgment. Financial support from the Carlsberg
Foundation and the Swedish Natural Science Research Council
is gratefully acknowledged.
Supporting Information Available: Spectral data (1H NMR,
13C NMR and HRMS) of all synthesized compounds and elemental
analysis for all new target compounds. This material is available
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3
Benzodiazepine Receptor Binding in Vitro. Binding of H-
flumazenil (87 Ci/mmol) to rat cortical membranes and to a
membrane suspension of HEK 293 cells expressing human R1â2γ2S
or R3â2γ2S GABAA receptors was done following methods previ-
ously described by Kahnberg et al.12 In brief, tissue is homogenized
in 20 mL of Tris, HCl (30 mM, pH 7.4) using an Ultra-Turrax
homogenizer. The suspensions are centrifuged at 27000g for 15
min followed by three centrifugation resuspension cycles. The
washed pellet is resuspended in 20 mL of buffer, incubated at 37
°C for 30 min, and then centrifuged for 10 min (27000g). The pellet
is washed once, and the final pellet is resuspended in 30 mL of
Tris-HCl buffer (50 mM, pH 7.4) and stored at -20 °C until use.
For binding studies frozen membrane suspensions were thawed and
centrifuged (27000g, 10 min). The pellet was resuspended into Tris-
citrate buffer (50 mM, pH 7.1) at a tissue concentration: cortex
preparation ca. 50 µg protein/0.55 mL assay (1 mg original tissue/
0.55 mL assay) and HEK cells ca. 25 µg protein per 0.55 mL assay.
Aliquots of 0.5 mL of membrane preparation are added to 25 µL
3
of H-flumazenil solution (1 nM final concentration) and 25 µL
containing test substance and incubated at an ice-bath (0-4 °C)
for 40 min. The incubated samples were added to 5 mL of ice-
cold buffer (Tris-citrate, 50 mM, pH 7.1), poured direcly onto
Whatman GF/C glass fiber filters under suction, and immediately
washed with 5 mL of ice-cold buffer. Nonspecific binding was
determined by adding clonazepam (1 µM final concentration) to
separate samples. Protein was estimated by conventional protein
assay method using bovine serum albumin as standard.
IC50 values were determined using four to six different concen-
trations of test substance. Ki values were calculated according to
Ki ) IC50/(1 + [L]/KD), ([L] is the concentration of 3H-flumazenil;
KD is binding affinity constant of 3H-flumazenil (1.6 nM). All assays
were done in triplicate (cortical assays) or duplicate (HEK cells).
Computational Methods. Conformational analyses were per-
formed by using the Monte Carlo Multiple Minimum (MCMM)