Amide-Linked Ribonucleoside Dimers
J . Org. Chem., Vol. 64, No. 22, 1999 8191
5.0, 1.5 Hz, 1H), 3.83-3.78 (m, 2H), 3.26 (dt, J ) 14.5, 3.1 Hz,
1H), 2.88 (ddd, J ) 15.5, 7.5, 5.0 Hz, 1H), 2.57 (dd, J ) 15.5,
8.0 Hz, 1H), 2.49 (dd, J ) 15.5, 8.0 Hz, 1H), 0.97, 0.91, 0.88,
0.87 (4 × s, 4 × 9H), 0.17, 0.16, 0.14 (3 × s, 3 × 3H), 0.09 (s,
6H), 0.04, 0.01, -0.01 (3 × s, 3 × 3H); 13C NMR (75 MHz) δ
171.2, 163.6, 163.6, 155.5, 153.0, 150.9, 149.5, 143.9, 139.4,
119.4, 102.7, 96.2, 89.4, 84.9, 84.3, 78.0, 73.3, 71.8, 63.3, 41.0,
38.3, 32.5, 29.7, 26.1, 25.8, 25.7, 18.6, 18.0, 17.9, -4.6, -4.7,
-4.8, -5.29, -5.33; MS (FAB) m/z 991.5354 (MH+ [C45H83N8O9-
Si4] ) 991.5360). Anal. Calcd for C45H82N8O9Si4: C, 54.51; H,
8.34; N, 11.30. Found: C, 54.46; H, 8.08; N, 10.96.
2′,5′-Bis-O-(ter t-bu tyldim eth ylsilyl)-3′-deoxy-3′-[[N-(2′,3′-
bis-O-(ter t-bu tyld im eth ylsilyl)-5′-d eoxyu r id in -5′-yl)ca r -
boxa m id o]m eth yl]u r id in e (48). Procedure E [38 (80 mg,
0.16 mmol), 18 (80 mg, 0.17 mmol), DCC (64 mg, 0.31 mmol),
dried CH2Cl2 (0.8 mL), chromatography (40 f 70% EtOAc/
hexanes)] gave 48 (115 mg, 74%): 1H NMR (500 MHz) δ 8.88
(br s, 1H), 8.66 (br s, 1H), 8.14 (d, J ) 8.3 Hz, 1H), 7.23 (d,
J ) 7.8 Hz, 1H), 6.91 (dd, J ) 6.7, 4.2 Hz, 1H), 5.80 (d, J )
2.5 Hz, 1H), 5.75 (d, J ) 7.5 Hz, 1H), 5.65 (d, J ) 8.5 Hz, 1H),
5.24 (d, J ) 6.0 Hz, 1H), 4.68 (dd, J ) 6.0, 5.0 Hz, 1H), 4.44
(dd, J ) 5.3, 2.3 Hz, 1H), 4.12-4.10 (m, 1H), 4.07-4.03 (m,
2H), 3.92 (dd, J ) 5.0, 3.0 Hz, 1H), 3.71 (dd, J ) 12.3, 1.8 Hz,
1H), 3.62 (quint, J ) 6.9 Hz, 1H), 3.40 (dt, J ) 14.3, 3.6 Hz,
1H), 2.65-2.62 (m, 1H), 2.53 (dd, J ) 15.4, 7.6 Hz, 1H), 2.26
(dd, J ) 15.4, 7.1 Hz, 1H), 0.93, 0.90, 0.89, 0.86 (4 × s, 4 ×
9H), 0.16 (s, 3H), 0.11 (s, 6H), 0.08 (s, 6H), 0.07, 0.04, -0.02
(3 × s, 3 × 3H); 13C NMR δ 171.3, 164.0, 163.5, 150.6, 150.5,
143.7, 140.7, 128.3, 102.5, 101.4, 95.6, 90.5, 84.5, 73.1, 72.2,
62.3, 41.1, 37.8, 31.4, 25.8, 25.70, 25.65, 25.6, 18.3, 17.91, 17.85,
17.8, -4.65, -4.72, -4.8, -4.9, -5.0, -5.5, -5.7, -5.8; MS
(FAB) m/z 968.5101 (MH+ [C44H82N5O11Si4] ) 968.5088). Anal.
Calcd for C44H81N5O11Si4: C, 54.57; H, 8.43; N, 7.23. Found:
C, 54.62; H, 8.18; N, 7.08.
chromatography (50 f 60% EtOAc/hexanes)] gave 51 (81 mg,
71%): 1H NMR δ 8.50 (s, 1H), 8.20-8.13 (m, 2H), 8.04 (“d”,
J ) 7.2 Hz, 2H), 7.58 (d, J ) 7.2 Hz, 1H), 7.49-7.17 (m, 12H),
6.85 (“d”, J ) 6.2 Hz, 4H), 6.73 (br s, 1H), 5.77 (s, 1H), 5.75 (d,
J ) 8.0 Hz, 1H), 5.36-5.21 (m, 3H), 4.90 (t, J ) 5.7 Hz, 1H),
4.60 (“d”, J ) 3.8 Hz, 1H), 4.39 (m, 1H), 4.08 (“d”, J ) 8.6 Hz,
1H), 3.80 (s, 6H), 3.69-3.63 (m, 1H), 3.39 (d, J ) 14.8 Hz,
1H), 3.22 (d, J ) 10.2 Hz, 1H), 2.79-2.61 (m, 1H), 2.53-2.41
(m, 1H), 2.10-2.00 (m, 2H), 0.88 (s, 9H), 0.72 (s, 9H), 0.23,
0.09, -0.04, -0.05 (4 × s, 4 × 3H); 13C NMR δ 171.2, 165.5,
163.7, 163.0, 158.7, 158.6, 150.4, 150.3, 144.4, 142.9, 140.6,
135.3, 135.0, 133.5, 130.3, 130.2, 129.8, 129.2, 128.5, 128.1,
128.0, 127.1, 113.3, 102.9, 101.4, 95.5, 91.3, 86.9, 83.3, 80.9,
73.1, 71.5, 61.7, 55.2, 41.1, 38.3, 30.6, 25.7, 25.3, 17.9, 17.6,
-4.7, -5.3, -5.3, -5.6; MS (FAB) m/z 1168.4785 (MNa+
[C60H75N5O14Si2Na] ) 1168.4747).
2′-O-(ter t-Bu tyldim eth ylsilyl)-3′-deoxy-5′-O-(4,4′-dim eth -
oxytr ityl)-3′-[[N-(2′-O-m eth yl-5′-d eoxya d en osin -5′-yl)ca r -
boxa m id o]m eth yl]u r id in e (52). Procedure F [45 (29 mg,
0.035 mmol)/THF/EtOH (1:1, 2.0 mL), 29 (12 mg, 0.043 mmol)/
EtOH (1.8 mL), 5 days, preparative TLC (Et3N/MeOH/CH2-
Cl2, 0.5:10:90)] gave 52 (25 mg, 74%): 1H NMR (500 MHz) δ
9.31 (br s, 1H), 8.21 (d, J ) 8.0 Hz, 1H), 8.13 (s, 1H), 7.92 (m,
1H), 7.91 (s, 1H), 7.41 (dd, J ) 7.0, 1.5 Hz, 2H), 7.32-7.22 (m,
7H), 6.82 (dd, J ) 6.8, 1.8 Hz, 2H), 6.80 (dd, J ) 7.5, 2.0 Hz,
2H), 6.06 (br s, 2H), 5.84 (d, J ) 6.5 Hz, 1H), 5.79 (s, 1H), 5.27
(d, J ) 8.0 Hz, 1H), 4.58-4.56 (m, 2H), 4.31 (m, 2H), 4.09 (d,
J ) 10.0 Hz, 1H), 3.97 (ddd, J ) 14.5, 8.3, 3.0 Hz, 1H), 3.77
(dd, J ) 12.0, 2.0 Hz, 1H), 3.73, 3.71, 3.32 (3 × s, 3 × 3H),
3.32-3.27 (m, 2H), 2.80-2.75 (m, 2H), 2.57 (dd, J ) 16.0, 8.5
Hz, 1H), 1.94 (dd, J ) 16.0, 4.5 Hz, 1H), 0.84 (br s, 9H), 0.22
(s, 3H), 0.06 (s, 3H); 13C NMR δ 171.1, 164.2, 158.7, 156.3,
152.8, 150.9, 149.0, 144.4, 141.0, 140.7, 135.3, 135.1, 130.4,
130.2, 128.2, 128.0, 127.1, 120.7, 113.3, 101.8, 91.3, 88.7, 87.1,
84.7, 83.5, 81.4, 78.0, 70.6, 61.5, 58.8, 55.1, 41.1, 38.0, 30.6,
25.7, 17.9, -4.8, -5.3; MS (FAB) m/z 987.4097 (MNa+
[C49H60N8O11SiNa] ) 987.4049).
5′-Azid o-2′-O-(ter t-bu tyld im eth ylsilyl)-3′-[[N-(2′,3′-bis-
O-(ter t-bu tyld im eth ylsilyl)-5′-d eoxyu r id in -5′-yl)ca r box-
a m id o]m eth yl]-3′,5′-d id eoxyu r id in e (53). Procedure E [41
(225 mg, 0.529 mmol), 18 (223 mg, 0.473 mmol), DCC (118
mg, 0.572 mmol), dried CH2Cl2 (2.2 mL), chromatography
(2.5 f 5% MeOH/CH2Cl2)] gave 53 (324 mg, 78%): 1H NMR
(300 MHz) δ 9.11 (br s, 1H), 8.93 (br s, 1H), 7.77 (d, J ) 8.4
Hz, 1H), 7.23 (d, J ) 8.1 Hz, 1H), 7.17 (dd, J ) 6.9, 3.6 Hz,
1H), 5.76 (s, 1H), 5.74 (t, J ) 2.0 Hz, 2H), 5.21 (d, J ) 6.6 Hz,
1H), 4.74 (dd, J ) 6.6, 5.1 Hz, 1H), 4.40 (dd, J ) 4.7, 1.7 Hz,
1H), 4.18-4.14 (m, 2H), 3.95 (dd, J ) 4.8, 2.1 Hz, 1H), 3.81
(dd, J ) 13.5, 2.7 Hz, 1H), 3.72-3.61 (m, 2H), 3.39 (dt, J )
13.8, 3.2 Hz, 1H), 2.59-2.49 (m, 2H), 2.34 (dd, J ) 17.0, 9.5
Hz, 1H), 0.92, 0.91, 0.86 (3 × s, 3 × 9H), 0.19, 0.10, 0.096,
0.09, 0.04, -0.02 (6 × s, 6 × 3H); 13C NMR (75 MHz) δ 171.4,
163.3, 162.9, 150.7, 150.5, 144.7, 139.9, 102.9, 102.4, 97.0, 91.2,
85.3, 82.6, 78.1, 73.5, 71.8, 52.7, 41.4, 40.1, 32.4, 26.04, 25.99,
25.9, 18.3, 18.1, -4.3, -4.4, -4.7, -5.1; MS (FAB) m/z
901.4114 (MNa+ [C38H66N8O10Si3Na] ) 901.4107).
2′,5′-Bis-O-(ter t-bu tyld im eth ylsilyl)-3′-d eoxy-3′-[[N-(5′-
deoxyaden osin -5′-yl)car boxam ido]m eth yl]aden osin e (49).
Procedure F [39 (100 mg, 0.152 mmol), 5′-amino-5′-deoxyAdo
(40 mg, 0.15 mmol), pyridine (5 mL), 4 days, chromatography
1
(SSA)] gave 49 (77 mg, 65%): H NMR (DMSO-d6, 500 MHz)
δ 8.39 (s, 1H), 8.37 (s, 1H), 8.31 (t, J ) 4 Hz, 1H), 8.21 (s, 1H),
8.20 (s, 1H), 7.36 (br s, 4H), 5.95 (d, J ) 2.0 Hz, 1H), 5.89 (d,
J ) 6.5 Hz, 1H), 5.48 (d, J ) 5.5 Hz, 1H), 5.29 (d, J ) 4.0 Hz,
1H), 4.73 (d, J ) 5.5 Hz, 1H), 4.65 (dd, J ) 5.0, 1.5 Hz, 1H),
4.39 (d, J ) 4.0 Hz, 1H), 4.11-3.98 (m, 4H), 3.81-3.79, 3.53-
3.42, 2.82-2.74 (3 × m, 3 × 1H), 2.49 (dd, J ) 16.8, 7.2 Hz,
1H; overlap with solvent peaks), 2.30 (dd, J ) 16.8, 6.3 Hz,
1H), 0.93 (s, 9H), 0.86 (s, 9H), 0.12 (s, 3H), 0.11 (s, 6H), 0.10
(s, 3H); 13C NMR (DMSO-d6, 125 MHz) δ 170.5, 156.1, 156.0,
152.6, 152.4, 149.2, 148.8, 140.2, 137.9, 119.4, 118.9, 89.3, 87.9,
84.0, 83.2, 77.6, 72.6, 71.3, 62.8, 37.8, 30.5, 25.8, 25.6, 18.1,
17.6, -4.9, -5.5; MS (FAB) m/z 786.3919 (MH+ [C34H56N11O7-
Si2] ) 786.3903).
2′,5′-Bis-O-(ter t-bu tyld im eth ylsilyl)-3′-d eoxy-3′-[[N-(5′-
d eoxyu r id in -5′-yl)ca r boxa m id o]m eth yl]a d en osin e (50).
Procedure F [39 (10 mg, 0.015 mmol), 5′-amino-5′-deoxyUrd
(4 mg, 0.02 mmol), pyridine (0.5 mL), 3 days, chromatography
(SSA)] gave 50 (8 mg, 70%): 1H NMR (DMSO-d6, 500 MHz) δ
11.39, 8.38, 8.20 (3 × s, 3 × 1H), 8.15 (t, J ) 5.8 Hz, 1H), 7.70
(d, J ) 7.5 Hz, 1H), 7.35 (s, 2H), 5.95 (d, J ) 2.0 Hz, 1H), 5.77
(d, J ) 5.5 Hz, 1H), 5.66 (d, J ) 8.5 Hz, 1H), 5.42 (d, J ) 5.5
Hz, 1H), 5.17 (d, J ) 5.5 Hz, 1H), 4.66 (dd, J ) 5.0, 1.5 Hz,
1H), 4.11 (dd, J ) 10.8, 5.3 Hz, 1H), 4.05-4.02 (m, 2H), 3.87
(dd, J ) 10.0, 5.0 Hz, 1H), 3.84-3.78 (m, 2H), 3.52-3.49, 3.23-
3.19, 2.80-2.77 (3 × m, 3 × 1H), 2.48 (dd, J ) 16.0, 8.0 Hz,
1H), 2.30 (dd, J ) 15.8, 6.3 Hz, 1H), 0.94 (s, 9H), 0.89 (s, 9H),
0.13 (s, 3H), 0.12 (s, 6H), 0.11 (s, 3H); 13C NMR (DMSO-d6,
125 MHz) δ 170.5, 162.9, 156.0, 152.5, 150.6, 148.8, 141.3,
137.9, 118.9, 101.9, 89.3, 88.4, 83.9, 82.2, 77.6, 72.4, 70.9, 62.8,
41.2, 37.8, 30.5, 25.8, 25.6, 18.1, 17.6, -4.9, -5.5; MS (FAB)
m/z 763.3649 (MH+ [C33H55N8O9Si2] ) 763.3631).
5′-Am in o-2′-O-(ter t-bu tyld im eth ylsilyl)-3′-[[N-(2′,3′-bis-
O-(ter t-bu tyld im eth ylsilyl)-5′-d eoxyu r id in -5′-yl)ca r box-
a m id o]m eth yl]-3′,5′-d id eoxyu r id in e (54). Procedure B [53
(25 mg, 0.028 mmol), 10% Pd-C (5 mg), H2 (5 psi), dried THF
(5 mL), 8 h, chromatography (SSA)] gave 54 (15 mg, 63%): 1H
NMR (500 MHz) δ 8.30, 7.30, 7.24 (3 × br s, 3 × 1H), 5.76 (d,
J ) 7.0 Hz, 1H), 5.69 (d, J ) 6.5 Hz, 1H), 5.63 (s, 1H), 5.21 (s,
1H), 4.71 (br s, 1H), 4.41 (br s, 1H), 4.12 (br s, 2H), 3.95 (br s,
1H), 3.72 (m, 1H), 3.34 (d, J ) 12.5 Hz, 1H), 3.18 (m, 1H),
2.97 (br s, 1H), 2.55 (br s, 1H), 2.53 (d, J ) 15.5 Hz, 1H), 2.33
(m, 1H), 0.92, 0.91, 0.85 (3 × br s, 3 × 9H), 0.19 (s, 3H), 0.10
(s, 3H), 0.08 (s, 6H), 0.03 (s, 3H), -0.04 (s, 3H); 13C NMR (75
MHz) δ 172.0, 164.3, 163.8, 150.9, 150.7, 144.3, 141.7, 102.8,
101.8, 95.8, 92.4, 85.0, 84.3, 78.5, 73.3, 72.3, 42.6, 41.4, 39.9,
32.1, 30.4, 29.9, 26.04, 25.97, 25.9, 18.2, 18.2, 18.1, -4.30,
-4.32, -4.4, -4.5, -4.7, -5.1; MS (FAB) m/z 853.4390 (MH+
[C38H69N6O10Si3] ) 853.4386).
3′-[[N-(3′-O-Ben zoyl-2′-O-(ter t-b u t yld im et h ylsilyl)-5′-
d eoxyu r id in -5′-yl)ca r boxa m id o]m eth yl]-2′-O-(ter t-bu tyl-
d im et h ylsilyl)-5′-O-(4,4′-d im et h oxyt r it yl)-3′-d eoxyu r i-
d in e (51). Procedure E [44 (88 mg, 0.11 mmol), 36 (48 mg,
0.10 mmol), DCC (40 mg, 0.19 mmol), dried CH2Cl2 (0.9 mL),
5′-Azid o-2′-O-(ter t-bu tyld im eth ylsilyl)-3′-[[N-(2′-O-(ter t-
b u t yld im et h ylsilyl)-3′,5′-d id eoxy-3′-[(et h oxyca r b on yl)-