Tamandarins A and B: New Cytotoxic Depsipeptides
J . Org. Chem., Vol. 65, No. 3, 2000 791
[MCs + 2H]+, calcd for C54H84N7O14, 1187.5131 (∆ ) 4.8 ppm);
Hz), 1.99 (m, 1H), 2.52 (d, 1H, J ) 6.0 Hz), 2.54 (s, 1H), 3.72
(s, 3H), 3.95 (m, 1H), 4.21 (m, 1H), 6.66 (br d, 1H, J ) 10.5
Hz).
1H and 13C NMR data (CDCl3) are shown in Table 1.
Ta m a n d a r in B (2): white amorphous solid or transparent
glass; [R]D ) -29° (c ) 0.11, MeOH); IR (KBr) 3472, 3342,
2966, 2872, 1742, 1661, 1637, 1531, 1514, 1449, 1249, 1173,
1078, 1032 cm-1; UV (CH2Cl2) λmax 227 (ꢀ 14 400), 277 (ꢀ 1500),
283 nm (1200); HRFABMS (NBA/CsI matrix) m/z 1173.4916
[MCs + 2H]+, calcd for C53H82N7O14, 1173.4974 (∆ ) 4.9 ppm);
1H and 13C NMR data (CDCl3) are shown in Table 2.
P r ep a r a tion of N,O-Dim eth yltyr osin e Meth yl Ester
(Me3Tyr ) Sta n d a r d . N,O-Dimethyltyrosine methyl ester was
obtained by deprotection of N-Cbz-N,O-dimethyltyrosine meth-
yl ester (1 mg, see further) in refluxing TFA (1 mL) for 30 min.
Reaction progress was monitored by silica TLC analysis. The
reaction mixture was cooled and evaporated to dryness, and
traces of TFA were removed by repeated evaporation from
water. The crude N,O-dimethyltyrosine methyl ester was then
converted to its Marfey derivative without further purification.
P r ep a r a tion of N-Cbz-N,O-Dim eth yltyr osin e Meth yl
Ester . A mixture of 100 mg (0.32 mmol) of N-Cbz-tyrosine
(D:L ) 3:7) was dimethylated using methods described previ-
ously.33 The protected amino acid was dissolved in 5 mL of
DMF, and 10 mg of Bu4NHSO4 (20 wt %) was added. Portions
of 180 mg of finely powdered KOH and 300 µL of dimethyl
sulfate were added three times over a period of 16 h, during
which time the reaction mixture was stirred vigorously at room
temperature. The reaction mixture was cooled to 0 °C and
diluted with 20 mL of diethyl ether, and the 30 mL of water
was added. The aqueous layer was separated, and the organic
layer was extracted twice with 30 mL of saturated NaHCO3
solution. The aqueous layers were combined, acidified with
KHSO4 (1 M) to pH 1, and extracted three times with ethyl
acetate. The organic layers were combined, dried over MgSO4,
filtered, and dried in vacuo. The crude reaction mixture was
dissolved in 1 mL of absolute methanol, cooled in ice, and
methylated with CH2N2 in ether. The solvent was evaporated
under a stream of nitrogen, and N-Cbz-N,O-dimethyltyrosine
methyl ester was purified by RP (C18) HPLC using 23% water
in methanol. Compound 5 was obtained as a colorless oil: 1H
NMR (CDCl3) δ 2.85 and 2.83 (s, 3H, rotational isomers), 2.97
(dd, 1H, J ) 11.9 Hz), 3.28 (tr d, 1H, J ) 14.2, 5.7 Hz), 3.75
and 3.68 (s, 3H, rotational isomers), 3.79 (s, 3H), 4.77 and 4.98
(dd, 1H, J ) 5.1, 10.2 Hz, rotational isomers), 5.05 (d, 1H, J )
5.7 Hz), 5.12 (d, 1H, 5.7 Hz), 6.78 (d, 1H, J ) 7.9 Hz), 6.82 (d,
1H, J ) 8.0 Hz), 7.04 (d, 1H, J ) 7.9 Hz), 7.13 (d, 1H, J ) 8.0
Hz), 7.24 (m, 1H), 7.33 (m, 4H).
Mild Alk a lin e Hyd r olysis of Ta m a n d a r in s A (1) a n d
B (2). A sample of tamandarin A (1) (5 mg) was dissolved in
cooled (4 °C) methanol (500 µL) and hydrolyzed by adding 30
µL of 1 N sodium hydroxide at room temperature. The
disappearance of starting material was monitored by silica
TLC. After 75 min, the reaction was quenched by acidification
with 30 µL of 1 N hydrochloric acid. The crude reaction mixture
was methylated by addition of diazomethane in ether until a
yellow coloration persisted and gas liberation ceased (ap-
proximately 1.5 mL). The resulting solution was evaporated
to dryness, and the residue was fractionated by silica column
chromatography (1 g) using 5% methanol in dichloromethane.
The two major peptide fragments produced (northern fragment
3 and southern fragment 4) were purified by RP (C18) HPLC
using 23% water in methanol. The procedure was repeated
with 5 mg of didemnin B to obtain two reference peptide
fragments (northern fragment 3 and a southern fragment).
Tamandarin B (2) (5 mg) was hydrolyzed using the same
method, yielding two peptide fragments, a northern fragment
(3′) and a southern fragment (4). Similarly, 1 mg of nordidem-
nin B was hydrolyzed to obtain reference peptide fragments
(northern fragment 3′ and a southern fragment).
Nor t h er n P ep t id e F r a gm en t of Ta m a n d a r in A (3):
white, amorphous solid or transparent glass; [R]D ) +41° (c )
0.07, MeOH); HRFABMS (NBA/CsI matrix) m/z 719.2658
[MCs + 2H+], calcd for C28H50N4O9, 719.2632 (∆ ) 3.6 ppm);
1H NMR (CDCl3, determined by 1H and COSY experiments)
for (S)-Lac, δ 4.41 (m, 1H), 1.18 (d, 3H, J ) 6.3 Hz), for L-Pro,
δ 4.75 (br tr, 1H, J ) 6.6 Hz), 3.64 (m, 2H), 2.23 (m, 2H), 1.97
(m, 2H), for D-MeLeu, δ 5.36 (dd, 1H, J ) 10.2, 5.1 Hz), 3.08
(s, 3H), 1.96 (m, 1H), 1.90 (m, 1H), 1.43 (m, 1H), 0.97 (d, 3H,
J ) 6.6 Hz), 0.93 (d, 3H, J ) 6.6 Hz), for L-Thr, δ 7.37 (d, 1H,
Acid -Ca ta lyzed Hyd r olysis of Sou th er n P ep tid e F r a g-
m en t (4). The southern peptide fragment (4, 1 mg) in 0.5 mL
of 6 N HCl was heated at 105 °C for 16 h in a sealed vial. The
cooled reaction mixture was evaporated to dryness, and traces
of HCl were removed from the residual hydrolysate by
repeated evaporation from H2O.
J
) 7.8 Hz), 4.37 (m, 2H), 1.37 (d, 3H, J ) 6.6 Hz), for
(3S,4R,5S)-Ist, δ 6.62 (br d, 1H, J ) 10.8 Hz), 4.16 (d tr, 1H,
J ) 6.0, 5.3 Hz), 4.04 (m, 1H), 3.70 (s, 3H), 2.54 (s, 1H), 2.52
(d, 1H, J ) 6.3 Hz), 1.91 (m, 1H), 1.37 (m, 1H), 1.20 (m, 1H),
0.93 (d, 3H, J ) 8.1 Hz), 0.91 (tr, 3H, J ) 6.8 Hz).
Am in o Acid An a lysis of Sou th er n P ep tid e (4) Usin g
Ma r fey’s Meth od . The previously obtained crude hydrolysate
of the southern peptide fragment (4), or the crude N,O-
dimethyltyrosine methyl ester (Me3Tyr), or a small amount
of standard free amino acid (D:L ) 3:7), in 50 µL of water/
acetone was mixed with 100 µL of a 1% solution of FDAA
(Marfey’s reagent ) 1-fluoro-2,4-dinitrophenyl-5-L-alanine
amide) in acetone. NaHCO3 (20 µL, 1 M) was added to this
mixture, and the resultant solution was heated at 40 °C for 1
h and then allowed to cool. After addition of 10 µL of 2 M HCl,
the resulting solution was evaporated, dissolved in 0.5 mL of
DMSO, and analyzed by diode array HPLC. The analysis used
the following conditions: solvent A, 0.1% TFA in H2O; solvent
B, 0.1% TFA in methanol; gradient flow rate of A + B at 1
mL/min, 100/0 to 80/20 in 45 min and from 80/20 to 40/60 in
45 min; column, Hewlett-Packard ODS Hypersil 5µ, 200 mm
× 4.6 mm; UV detection at 340 nm. The peaks were identified
by comparison with a mixture of D/L-standard amino acid-DAA
derivatives (D:L ) 3:7). Retention times (min): L-Me3Tyr-DAA,
56.5; L-Pro-DAA, 58.8; L-Leu-DAA, 70.5.
Sou th er n P ep tid e F r a gm en t of Ta m a n d a r in s A a n d
B (4): white amorphous solid or transparent glass; [R]D
)
-100°(c ) 0.03, MeOH); HRFABMS (NBA/CsI or NaI matrix)
m/z 666.2179 [MCs + H+], calcd for C28H43N3O7, 666.2155
(∆ ) 3.6 ppm), and m/z 534.3160 [M + H+], calcd for
C
28H43N3O7, 534.3179 (∆ ) 3.6 ppm); 1H NMR (CDCl3,
determined by 1H and COSY experiments) for L-Me3Tyr, δ 2.93
(s, 3H), 3.01 (dd, 1H, J ) 14.4, 9.3 Hz), 3.27, (dd, 1H, J )
14.7, 6.0 Hz), 3.80 (s, 3H), 3.69 (s, 3H), 5.03 (dd, 1H, J ) 9.3,
6.3 Hz), 6.83 (d, 2H, J ) 8.7 Hz), 7.12 (d, 2H, J ) 8.4 Hz), for
L-Pro, δ 1.87 (m, 1H), 2.16 (m, 3H), 3.68 (m, 1H), 3.82 (m, 1H),
4.78 (m, 1H), for L-Leu, δ 0.98 (tr, 6H, J ) 6.3 Hz), 1.67 (m,
1H), 1.71 (m, 2H), 4.78 (m, 1H), 6.99 (d, 1H, J ) 8.7 Hz), for
(S)-Hiv, δ 0.87 (d, 3H J ) 6.9), 1.03 (d, 3H, J ) 6.9 Hz), 2.16
(m, 1H), 3.96 (d, 1H, J ) 3.0 Hz).
Nor t h er n P ep t id e F r a gm en t of Ta m a n d a r in B (3′):
white amorphous solid or transparent glass; [R]D ) +24° (c )
0.05, MeOH); HRFABMS (NBA/NaI matrix) m/z 595.3302
[MNa + 2H+], calcd for C27H46N4O9, 595.3319 (∆ ) 2.9 ppm);
1H NMR (CDCl3, determined by 1H and COSY experiments)
for (S)-Lac, δ 1.21 (d, 3H, J ) 6.3 Hz), 4.45 (m, 1H), for L-Pro,
1.99 (m, 2H), 2.26 (m, 2H), 3.68 (m, 2H), 4.78 (br tr, 1H, J )
7.2 Hz), for D-MeLeu, δ 0.93 (d, 3H, J ) 6.6 Hz), 0.97 (d, 3H,
J ) 7.2 Hz), 1.48 (m, 1H), 1.68 (m, 1H), 1.94 (m, 1H), 3.11 (s,
3H), 5.38 (dd, 1H, J ) 10.5, 4.8 Hz), for L-Thr, δ 1.40 (d, 3H,
J ) 6.9 Hz), 4.41 (m, 2H), 7.41 (br d, 1H, J ) 7.2 Hz), for
(3S,4R)-Nst, δ 0.98 (tr, 3H, J ) 6.6 Hz), 0.99 (d, 3H, J ) 6.9
Mosh er Ester An a lysis of Hiv2 in Sou th er n P ep tid e
F r a gm en t (4). The southern peptide fragment (4, 1 mg) was
dissolved in 200 µL of dichloromethane. Dry pyridine (100 µL,
(33) The method as described in the literature (Li, W.-R.; Ewing,
W. R.; Harris, B. D.; J oullie´, M. M. J . Am. Chem. Soc. 1990, 112, 7659-
7672), followed by methylation with diazomethane, yielded only
O-methyltyrosine methyl ester. For dimethylation to occur, the modi-
fied reaction scheme was used.