Journal of Medicinal Chemistry
Article
B), 6.92−6.83 (m, 0.31H, A), 6.81−6.75 (m, 1.85H, B), 6.73−6.70
(m, 0.99H, A+B), 6.69 (d, 0.82H, B), 6.67−6.60 (m, 1.17H, A+B),
6.46 (d, J = 1.8 Hz, 0.80H, B), 6.37 (d, J = 1.9 Hz, 0.14H, A), 6.33 (d,
J = 1.8 Hz, 0.79H, B), 5.97−5.89 (m, 0.28H, A), 5.79 (dt, J = 4.9, 16.2
Hz, 0.15H, A), 5.72−5.61 (m, 1.69H, A+B), 5.56 (dd, J = 4.8, 9.2 Hz,
0.82H, B), 5.29−5.25 (m, 0.80H, B), 4.74 (d, J = 5.8 Hz, 0.14H, A),
4.69−4.53 (m, 2.01H, A+B), 4.24−4.17 (m, 0.14H, A), 3.98−3.92
(m, 0.16H, A), 3.89−3.81 (m, 1.75H, A+B), 3.76−3.67 (m, 13.11H,
A+B), 3.43 (d, J = 8.7 Hz, 0.87H, B), 2.84 (d, J = 9.9 Hz, 0.14H, A),
2.74 (td, J = 3.1, 13.3 Hz, 0.97H, B), 2.61−2.54 (m, 0.99H, A+B),
2.50−2.34 (m, 3.56H, A+B), 2.11−2.03 (m, 1.01H, A+B), 1.99−1.89
(m, 1.76H, A+B), 1.85−1.79 (m, 1.00H, A+B), 1.70−1.55 (m, 5.22H,
A+B), 1.46−1.37 (m, 0.94H, A+B), 1.33−0.76 (m, 8.59H, A+B),
0.55−0.45 (m, 0.25H, A). 13C NMR (126 MHz, THF-d8, mixture of
rotamers 1:5, A/B): δ 172.93 (B), 172.50 (A), 171.01 (A), 170.82
(B), 160.49 (A), 158.96 (B), 155.71 (A), 154.13 (B), 153.78 (B),
152.91 (A), 150.90 (B), 149.38 (A), 149.31 (B), 143.39 (B), 143.08
(A), 140.29 (A), 138.59 (B), 135.26 (A), 134.78 (B), 134.63 (A),
134.05 (B), 130.50 (B), 130.46 (B), 130.20 (A), 128.57 (B), 128.09
(A), 121.32 (A), 121.15 (B), 118.90 (B), 118.09 (B), 117.02 (A),
114.42 (B), 113.76 (B), 113.50 (A), 113.35 (B), 112.60 (A), 108.21
(B), 108.16 (B), 104.99 (A), 76.99 (A), 76.77 (B), 70.74 (A), 68.99
(B), 68.89 (A), 68.73 (B), 68.10 (A), 60.66 (A), 60.54 (B), 57.18
(A), 56.52 (B), 56.38 (B), 56.28 (B), 56.09 (B), 53.14 (B), 44.15
(B), 42.35 (A), 42.27 (B), 40.01 (A), 39.64 (B), 39.29 (A), 34.01
(B), 33.80 (B), 33.48 (A), 32.60 (B), 32.43 (A), 31.71 (B), 31.15
(A), 30.80 (A), 28.19 (A), 28.03 (B), 27.79 (B), 27.61 (B), 27.41
(A), 27.21 (A), 26.49 (B), 25.98 (A), 22.52 (A), 22.35 (B). HRMS
(m/z): (ESI+) calculated for C44H56NO9 [M + H]+: 742.39496, found
742.39517. HPLC (70−100% solvent B, 0.8 mL/min, 10.5 min): tR =
6.23 min, purity (220 nm) = 99%.
(B), 55.96 (A), 55.93 (B), 55.23 (B), 52.06 (B), 43.61 (B), 41.46
(B), 39.35 (A), 38.51 (B), 37.92 (A), 33.03 (B), 32.39 (A), 31.63
(A), 31.28 (B), 30.81 (B), 30.28 (A), 27.40 (A), 27.02 (B), 26.68
(B), 26.41 (A), 26.35 (B), 26.29 (A), 26.03 (A), 25.66 (B), 24.41
(A), 21.12 (B). HRMS (m/z): (ESI+) calculated for C45H58NO10 [M
+ H]+: 772.40552, found 772.40598. HPLC (70−100% solvent B,
0.80 mL/min, 10.50 min): tR = 5.42 min, purity (220 nm) = 96%.
Data for macrocycle 37-(Z): TLC (CH/EA = 1:1 + 1% HCOOH, v/
v/v): Rf = 0.52. Note: At room temperature, the NMR spectra of
compound 37-(Z) show the presence of multiple rotamers (two
major and two minor rotamers). Due to this, the proton and carbon
NMR spectra become very complex and signals cannot be assigned to
specific rotamers. 1H NMR (500 MHz, CDCl3, mixture of rotamers):
δ 7.28−7.24 (m, 0.98H), 7.16 (dt, J = 7.9, 10.4 Hz, 0.72H), 7.01 (t, J
= 2.0 Hz, 0.15H), 6.97 (t, J = 2.0 Hz, 0.16H), 6.92 (dd, J = 2.1, 8.0
Hz, 0.29H), 6.89−6.73 (m, 3.01H), 6.72−6.66 (m, 1.03H), 6.65−
6.55 (m, 2.97H), 6.50 (d, J = 1.9 Hz, 0.36H), 6.35 (d, J = 1.9 Hz,
0.30H), 6.23 (d, J = 2.0 Hz, 0.14H), 6.01−5.74 (m, 2.45H), 5.52 (dd,
J = 5.6, 8.7 Hz, 0.36H), 5.45−5.36 (m, 1.00H), 4.79−4.57 (m,
2.38H), 4.52 (d, J = 13.7 Hz, 0.17H), 4.30−4.20 (m, 1.49H), 4.19−
3.97 (m, 2.86H), 3.89−3.75 (m, 14.09H), 3.72−3.69 (m, 0.35H),
3.65−3.60 (m, 0.30H), 3.57−3.51 (m, 0.29H), 3.39 (dd, J = 5.7, 9.4
Hz, 0.60H), 3.25 (d, J = 9.6 Hz, 0.17H), 2.93−2.83 (m, 0.55H), 2.77
(td, J = 3.1, 13.3 Hz, 0.32H), 2.68−2.51 (m, 1.32H), 2.48−2.40 (m,
0.65H), 2.38−2.19 (m, 1.39H), 2.16−2.02 (m, 1.70H), 1.98−1.75
(m, 2.19H), 1.72−1.55 (m, 6.00H), 1.47−1.27 (m, 4.00H), 1.19−
1.00 (m, 2.99H), 0.92−0.73 (m, 2.06H), 0.40−0.30 (m, 0.17H),
0.27−0.18 (m, 0.15H). 13C NMR (126 MHz, CDCl3, mixture of
rotamers): δ 172.82, 172.54, 171.64, 170.86, 170.66, 170.33, 170.28,
159.47, 158.88, 158.85, 158.25, 154.47, 154.27, 153.46, 152.87,
152.39, 152.13, 151.94, 151.28, 149.12, 149.07, 148.99, 147.64,
147.58, 147.49, 147.46, 142.76, 141.95, 141.60, 138.28, 134.33,
134.12, 133.73, 133.66, 133.54, 133.47, 133.24, 130.30, 129.80,
129.70, 129.66, 129.54, 129.50, 129.10, 128.83, 128.76, 126.04,
121.11, 120.53, 120.42, 120.32, 119.77, 117.33, 116.71, 116.43,
116.37, 115.37, 113.69, 112.45, 112.03, 111.97, 111.91, 111.86,
111.80, 111.56, 111.49, 111.40, 109.81, 109.53, 108.82, 107.44,
106.54, 104.66, 104.46, 76.71, 76.41, 76.30, 75.63, 71.34, 70.69, 70.66,
70.26, 70.14, 69.83, 69.34, 68.60, 68.52, 68.16, 67.70, 67.39, 67.24,
67.11, 64.65, 64.43, 61.09, 60.95, 60.92, 56.41, 56.34, 56.26, 56.09,
56.07, 55.96, 55.69, 55.23, 54.81, 52.39, 52.16, 43.85, 41.26, 41.23,
40.05, 39.34, 38.37, 38.26, 38.09, 36.87, 33.55, 32.98, 32.78, 32.53,
31.81, 31.70, 31.58, 31.40, 31.21, 30.94, 30.81, 30.74, 30.33, 29.84,
27.46, 27.00, 26.79, 26.72, 26.59, 26.55, 26.46, 26.42, 26.35, 26.31,
26.06, 25.75, 25.49, 24.81, 24.34, 21.22, 20.99, 20.87, 20.79. HRMS
(m/z): (ESI+) calculated for C45H58NO10 [M + H]+: 772.40552,
found 772.40547. HPLC (70−100% solvent B, 0.8 mL/min, 10.50
min): tR = 5.52 min, purity (220 nm) = 99%.
Macrocycle 38-(E). The substrate 30 (134 mg, 0.17 mmol, 1.00
equiv) was applied to general procedure B with Grubbs second
gGeneration catalyst (15 mg, 0.017 mmol, 0.10 equiv) and 1,4-
benzoquinone (2 mg, 0.017 mmol, 0.10 equiv) in DCM (1 mM, 175
mL). After workup procedure b, 38-(E) (43 mg, 33%, white solid)
was obtained as pure product isomer after purification by semi-
preparative HPLC (85−100% solvent B). Another product fraction
was obtained as a mixture of 38-(E) and an unidentified isomer
(probably the Z-alkene due to same m/z on HPLC−MS; 75 mg, 58%,
ratio 1:4, unidentified isomer E-alkene). Unfortunately, we were not
able to obtain the unidentified isomer as a pure product by column
chromatography or semipreparative HPLC. TLC (CH/EA = 2:1, v/
v): Rf = 0.32. 1H NMR (500 MHz, CDCl3, mixture of rotamers
0.36:1, A/B): δ 7.29−7.26 (m, 0.22H, A), 7.14 (t, J = 7.9 Hz, 0.86H,
B), 7.03−7.01 (m, 0.23H, A), 6.89−6.87 (m, 0.24H, A), 6.87−6.84
(m, 0.24H, A), 6.80−6.72 (m, 2.87H, A+B), 6.69−6.64 (m, 2.16H, A
+B), 6.63−6.59 (m, 1.23H, A+B), 6.47−6.43 (m, 1.48H, A+B), 6.28
(d, J = 1.9 Hz, 0.21H, A), 5.95−5.89 (m, 0.39H, A), 5.87−5.80 (m,
1.12H, A+B), 5.77 (dt, J = 5.1, 16.0 Hz, 0.92H, B), 5.58 (dd, J = 5.6,
8.3 Hz, 0.75H, B), 5.51 (d, J = 5.6 Hz, 0.73H, B), 4.64−4.56 (m,
0.95H, A+B), 4.40−4.36 (m, 1.43H, A+B), 4.14−4.04 (m, 2.40H, A
+B), 4.02−3.97 (m, 1.07H, A+B), 3.96−3.90 (m, 1.70H, A+B),
Macrocycles 37-(E) and 37-(Z). The substrate 29 (201 mg, 0.25
mmol, 1.00 equiv) was applied to general procedure B with Grubbs
second generation catalyst (21 mg, 0.03 mmol, 0.10 equiv) and 1,4-
benzoquinone (3 mg, 0.03 mmol, 0.10 equiv) in DCM (1 mM, 250
mL). After workup procedure b, 37-(E) (58 mg, 30%, white solid)
and 37-(Z) (7 mg, 4%, white solid) were obtained as pure product
isomers after purification by flash column chromatography (CH/EA =
4:1) and semipreparative HPLC (80−100% solvent B). Another
product fraction was obtained as a mixture of E/Z isomers (75 mg,
39%) and not further purified. Data for macrocycle 37-(E): TLC
1
(CH/EA = 1:1 + 1% HCOOH, v/v/v): Rf = 0.52. H NMR (500
MHz, CDCl3, mixture of rotamers 0.34:1, A/B): δ 7.28−7.23 (m,
0.40H, A), 7.19−7.15 (m, 0.78H, B), 7.05−7.02 (m, 0.23H, A),
6.91−6.87 (m, 0.28H, A), 6.86−6.72 (m, 2.99H, A+B), 6.71−6.61
(m, 2.06H, A+B), 6.57−6.55 (m, 0.71H, B), 6.43−6.37 (m, 1.34H, A
+B), 6.33−6.30 (m, 0.23H, A), 6.00 (dt, J = 4.9, 17.3 Hz, 0.32H, A),
5.93−5.90 (m, 0.17H, A), 5.87 (dt, J = 5.2, 16.5 Hz, 1.15H, B), 5.83−
5.80 (m, 0.40H, A), 5.58 (dd, J = 5.3, 8.5 Hz, 0.74H, B), 5.49 (d, J =
5.5 Hz, 0.78H, B), 4.65−4.54 (m, 1.05H, A+B), 4.53−4.42 (m,
1.57H, A+B), 4.31−4.18 (m, 0.79H, A), 4.15−4.03 (m, 2.82H, A+B),
4.00−3.88 (m, 2.20H, A+B), 3.86−3.79 (m, 11.69H, A+B), 3.74−
3.61 (m, 4.92H, A+B), 3.33 (d, J = 9.5 Hz, 0.72H, B), 2.85−2.76 (m,
0.98H, A+B), 2.69 (d, J = 9.7 Hz, 0.24H, A), 2.65−2.48 (m, 1.31H, A
+B), 2.45−2.38 (m, 0.77H, B), 2.32−2.18 (m, 1.51H, A+B), 2.10−
1.96 (m, 2.00H, A+B), 1.90−1.83 (m, 1.51H, A+B), 1.70−1.56 (m,
5.38H, A+B), 1.51−1.23 (m, 5.20H, A+B), 1.17−0.99 (m, 2.30H, A
+B), 0.94−0.85 (m, 0.96H, A+B), 0.77−0.69 (m, 0.82H, B), 0.48−
0.38 (m, 0.23H, A), 0.26−0.17 (m, 0.25H, A). 13C NMR (126 MHz,
CDCl3, mixture of rotamers 1:4, A/B): δ 173.10 (A), 172.31 (B),
170.64 (B), 159.12 (A), 158.30 (B), 154.25 (A), 153.31 (B), 152.28
(B), 151.25 (A), 149.04 (A), 148.94 (B), 147.54 (A), 147.38 (B),
142.15 (B), 142.08 (A), 139.25 (A), 137.68 (B), 134.20 (A), 133.57
(B), 133.45 (A), 133.24 (B), 131.06 (B), 130.32 (A), 129.61 (A),
129.50 (B), 127.75 (B), 127.09 (A), 120.68 (A), 120.37 (B), 120.26
(A), 119.01 (B), 114.37 (B), 113.99 (A), 113.77 (A), 112.95 (B),
112.47 (A), 111.88 (B), 111.78 (A), 111.47 (A), 111.40 (B), 108.31
(B), 105.97 (B), 104.88 (A), 76.22 (A), 75.56 (B), 71.17 (A), 70.94
(A), 70.83 (B), 69.09 (A), 69.05 (B), 68.98 (B), 67.50 (B), 67.28
(A), 60.93 (B), 60.86 (A), 56.36 (B), 56.15 (A), 56.11 (A), 56.02
3338
J. Med. Chem. 2021, 64, 3320−3349