Angewandte
Chemie
DOI: 10.1002/anie.201205352
Bioorthogonal Chemistry
Genetically Encoded Cyclopropene Directs Rapid, Photoclick-
Chemistry-Mediated Protein Labeling in Mammalian Cells**
Zhipeng Yu, Yanchao Pan, Zhiyong Wang, Jiangyun Wang,* and Qing Lin*
Dedicated to Professor Andrew D. Hamilton on the occasion of his 60th birthday
The introduction of bioorthogonal organic reporters into
proteins site-selectively through genetic,[1] metabolic,[2] or
enzyme-catalyzed ligation methods,[3] in conjunction with
a growing repertoire of bioorthogonal reactions,[4] has allowed
for the visualization and regulation of proteins in their native
environment.[5] Numerous small organic functional groups,
such as ketones,[6] azides,[7] terminal alkynes,[8] and terminal
alkenes,[9] as well as larger reactive bioorthogonal groups,
such as cyclooctyne,[10] norbornene,[11] transcyclooctene,[10b,11b]
tetrazole,[12] and tetrazine[13] have been genetically encoded
for site-selective protein labeling in vivo. To track fast protein
dynamics in vivo, it is imperative that these genetically
encoded bioorthogonal reporters direct fast and selective
bioorthogonal labeling with the cognate biophysical probes,
preferably with spatiotemporal control.
In our continued effort to genetically encode substrates
that are suitable for photoclick chemistry,[14] we envisioned
that non-natural amino acids with strained alkenes attached
may show higher rate of cycloaddition without undergoing the
Michael addition side reactions with biological nucleophiles
typically associated with electron-deficient alkenes. While we
reported recently that norbornene exhibited robust reactivity
in the cycloaddition reaction with the macrocyclic tetra-
zoles,[15] norbornene is relatively bulky and may perturb the
structure of the encoded protein. Therefore, we tried to
genetically encode cyclopropene because of its small size and
inherently high ring strain (54.1 kcalmolÀ1 [16] versus 21.6 kcal
molÀ1 for norbornene[17]), much of which is released after the
cycloaddition reaction (ring strain of cyclopropane =
28.7 kcalmolÀ1).[18] Herein, we report the synthesis of
a stable cyclopropene amino acid, the characterization of its
reactivity in the photoinduced cycloaddition reaction with
two tetrazoles, its site-specific incorporation into proteins
both in E. coli and in mammalian cells, and its use in directing
bioorthogonal labeling of proteins both in vitro and in vivo.
To design a cyclopropene-containing amino acid suitable
for genetic incorporation, we decided to focus on pyrrolysyl/
tRNA synthetase (PylRS)/tRNACUA pair from Methanosar-
cina barkeri (Mb) because: 1) this pair is orthogonal to all
endogenous tRNAs and aminoacyl-tRNA synthetases in
E. coli and eukaryotic cells;[19] and 2) many non-natural
lysine-derived amino acids have been efficiently incorporated
into proteins based on this pair.[20] Preliminary studies showed
that 3,3-disubstituted cyclopropenes such as 1c exhibited
excellent chemical stability at room temperature. 1-Methyl-
cycloprop-2-enecarboxylic acid (1c) can be easily prepared
from the commercially available starting material ethyl-2-
methylacetoacetate, through a three-step procedure with an
overall yield of 21% (Scheme 1). The cyclopropene carbox-
ylic acid 1c was then coupled with the e-amino group of
Fmoc-lysine, which upon removal of the protecting group
[*] Y. Pan,[+] Prof. Dr. J. Wang
Laboratory of Noncoding RNA, Institute of Biophysics,
Chinese Academy of Sciences
Beijing 100101 (P.R. China)
E-mail: jwang@ibp.ac.cn
Dr. Z. Yu,[+] Dr. Z. Wang, Prof. Dr. Q. Lin
Department of Chemistry, State University of New York at Buffalo
Buffalo, NY 14260 (USA)
afforded
Ne-(1-methylcycloprop-2-enecarboxamido)lysine
(CpK, 1) in 74% yield over three steps. The crystal structure
of 1c was obtained, which showed a hydrogen-bonded dimer
of 1c (Scheme 1; see Supporting Information, Table S1 for
crystal data and structure refinement). As expected, a bond
E-mail: qinglin@buffalo.edu
[+] These two authors contributed equally to the work.
[**] We gratefully acknowledge the National Institutes of Health (GM
085092 to Q.L.), the Major State Basic Research Program of China
(2010CB912301 and 2009CB825505 to J.W.), National Science
Foundation of China (90913022 to J.W.), and CAS (KZCX2-YW-JC101
and KSCX2-EW-G-7 to J.W.) for financial support. We thank William
Brennessel at the University of Rochester for X-ray crystallography
and Reyna K. Lim in the Q.L. lab for plasmid preparation, Alan
Siegel at SUNY Buffalo Biological Sciences Imaging Facility
(supported by National Science Foundation Major Research
Instrumentation grant DBI-0923133) for assistance in microscopy.
CCDC 808108 (1c) contains the supplementary crystallographic
data for this paper. These data can be obtained free of charge from
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angle of only 508 at C1 C2 C1A provides very high strain in
the ring structure. Importantly, the carbonyl group in 1c is
essentially perpendicular to cyclopropene double bond,
preventing conjugation between these two p systems. Perhaps
as a result of this geometry, CpK was found to be very stable
around glutathione, an abundant biological nucleophile inside
cells; greater than 95% of CpK remained after incubation
with 10 mm glutathione (in reduced form) for more than 60 h
(Supporting Information, Figure S1).
Using ethyl-1-methylcycloprop-2-enecarboxylate (2) as
a model substrate, we examined the reactivity of cyclo-
propene with two representative tetrazoles: a 302 nm wave-
length photoreactive tetrazole 3[21] and a water-soluble
365 nm wavelength photoreactive tetrazole 4,[22] in acetoni-
Supporting information for this article (experimental details) is
Angew. Chem. Int. Ed. 2012, 51, 1 – 6
ꢀ 2012 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
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