Generation of 2′-Deoxy-5-methyleneuridin-5-yl
J . Org. Chem., Vol. 65, No. 15, 2000 4653
NMR (CDCl3) δ: 8.49 (s, 1H), 7.49 (s, 1H), 7.33 (m, 5H), 6.36
(t, J ) 6.8 Hz, 1H), 4.44 (m, 1H), 3.93 (m, 1H), 3.74 (t, J ) 3
Hz, 2H), 3.31 (d, J ) 3.9 Hz, 2H), 2.91 (m, 6H), 2.34 (m, 1H),
2.08 (m, 1H), 0.93 (s, 9H), 0.89 (s, 9H), 0.114 (s, 3H), 0.107 (s,
3H), 0.06 (s, 3H), 0.03 (s, 3H). 13C NMR (CDCl3) δ: 163.5,
149.8, 139.0, 135.9, 131.3, 127.7, 126.9, 109.4, 87.4, 84.7, 71.8,
62.8, 54.7, 46.2, 0.7, 35.6, 26.4, 25.9, 25.7, 24.1, 18.3, 18.0, -4.7,
-4.9, -5.3, -5.5. IR (film): 2953, 2929, 2857, 682, 1463, 1254,
1103, 837 cm-1. Anal. Calcd for C33H54N2O5S2Si2: C, 58.34;
H, 6.54; N, 4.13. Found: C, 58.23; H, 6.22; N, 4.13.
(500 µL), and Et3N‚3HF (91 µL, 90.1 mg) were placed in a 10-
mL round-bottom flask and stirred for 24 h. After the solvents
were removed in vacuo, flash chromatography on silica gel
eluting with 5-10% MeOH/EtOAc afforded 13 as a white solid
(18.8 mg, 96%): mp 164-166 °C. 1H NMR (CD3OD) δ: 7.79
(s, 0.6H), 7.76 (s, 0.4H), 7.23 (m, 5H), 6.26 (m, 1H), 4.39 (m,
1H), 4.02 (m, 1H), 3.90 (m, 1H), 3.77 (dd, J ) 2.7, 9.3 Hz, 1H),
3.72 (J ) 2.7, 9.3 Hz, 1H), 2.77 (m, 2H), 2.60 (m, 1H), 2.32 (m,
1H), 2.26 (m, 2H). 13C NMR (CD3OD) δ: 166.3, 152.4, 140.4,
140.1, 140.0, 130.7, 129.4, 127.3, 112.7, 89.0, 86.5, 72.3, 71.8,
71.7, 63.0, 45.0, 41.4, 41.3, 36.0. IR (film): 3389, 2925, 1685,
1471, 1276, 1053 cm-1. HRMS (FAB): C18H22N2O6 calcd
(M+ + H) 363.1556, found 363.1563.
3′,5′-Bis-O-(ter t-bu tyld im eth ylsilyl)-5-(2-p h en yleth yl)-
2′-d eoxyu r id in e. 3′,5′-Bis-O-(tert-butyldimethylsilyl)-5-sty-
renyl-2′-deoxyuridine (16)22a (75 mg, 0.14 mmol), 10% palla-
dium on carbon (39.7 mg), and MeOH (16.9 mL) were placed
in a 100-mL hydrogenation chamber. The chamber was pres-
surized with hydrogen gas (40 psi) and allowed to stir
overnight. The reaction mixture was filtered through Celite,
and the solvent was removed in vacuo. Flash chromatography
on silica gel eluting with 33-100% EtOAc:hexanes afforded
the reduced compound as a light yellow oil (44.7 mg, 59.2%).
1H NMR (CDCl3) δ: 8.83 (bs, 1H), 7.24 (m, 5H), 6.30 (dd, J )
5.7, 2.1 Hz, 1H), 4.34 (m, 1H), 3.89 (m, 1H), 3.73 (t, J ) 3.6,
2H), 2.85 (m, 2H), 2.63 (m, 2H), 2.19 (m, 1H), 1.82 (m, 1H),
0.93 (s, 9H), 0.91 (s, 9H), 0.11 (s, 6H), 0.09 (s, 6H). 13C NMR
(CDCl3) δ: 163.4, 150.4, 141.4, 136.2, 128.9, 128.6, 126.2, 114.2,
87.8, 84.8, 72.3, 63.1, 41.2, 35.0, 29.8, 26.2, 26.1, 26.0, 18.6,
18.2, -4.4, -4.6, -5.1, -5.2. IR (film): 2953, 2929, 2857, 1696,
1463, 1254, 1101, 1030, 835 cm-1. HRMS (FAB): C29H48N2O5-
Si2 calcd (M+ + H) 561.3180, found 561.3188.
3′,5′-Bis-O-(ter t-bu tyld im eth ylsilyl)-5-(3-p h en yl-2-oxo-
p r op yl)-2′-d eoxyu r id in e (12). Mercuric chloride (544 mg, 2.0
mmol), CaCO3 (216 mg, 2.17 mmol), and 4:1 CH3CN:H2O (8.3
mL) were added to a 50-mL round-bottom flask containing 11
(566 mg, 0.83 mmol). The white slurry was heated at reflux
for 8 h. The solution was allowed to cool to room temperature,
and the condenser was rinsed with CH2Cl2. The reaction
mixture was then filtered through Celite and rinsed with CH2-
Cl2 to remove mercury salts and CaCO3. The filtrate was
washed with H2O, dried over Na2SO4, filtered, and concen-
trated in vacuo to yield a crude white solid. Flash column
chromatography on silica gel eluting with 10-20% EtOAc:CH2-
Cl2 afforded 12 as a white foam (365 mg, 92%): mp 62-63 °C
1
(shrinks), 65-67 °C (glass). H NMR (CDCl3) δ: 9.79 (s, 1H),
7.50 (s, 1H), 7.30 (m, 5H), 6.36 (dd, J ) 6, 1.8 Hz, 1H), 4.39
(m, 1H), 3.93 (m, 1H), 3.85 (s, 2H), 3.82 (dd, J ) 3, 11.4 Hz),
3.74 (dd, J ) 3, 11.4 Hz), 3.52 (d, J ) 17.1 Hz, 1H), 3.32 (d,
J ) 17.1 Hz, 1H), 2.28 (m, 1H), 2.03 (m, 1H), 0.91 (s, 9H),
0.88 (s, 9H), 0.10 (s, 3H), 0.09 (s, 3H), 0.06 (s, 3H), 0.04 (s,
3H). 13C NMR (CDCl3) δ: 204.2, 163.1, 150.2, 138.4, 134.0,
129.7, 128.9, 127.3, 108.6, 88.0, 85.3, 72.4, 63.1, 50.2, 41.5, 39.4,
26.1, 26.1, 25.9, 18.5, 18.2, -4.5, -4.7, -5.3. IR (film): 2954,
2857, 1688, 1471, 1255, 1097, 1031, 837, 778 cm-1. HRMS
(FAB): C30H48N2O6Si2 calcd (M+ + H) 589.3129, found 589.3134.
5-(1-(3-P h en yl-2-oxop r op yl))-2′-d eoxyu r id in e (7). To a
50-mL round-bottom flask containing 12 (360 mg, 0.76 mmol)
were added THF (7.6 mL) and Et3N‚3HF (1.24 mL, 1.23 g, 7.6
mmol). The reaction was stirred for 10 h at room temperature.
The solvents were removed in vacuo by rotary evaporation.
Flash chromatography on silica gel eluting with 10-20%
MeOH:EtOAc afforded deprotected ketone as a white solid (204
mg, 74%): mp 163-165 °C. 1H NMR (CD3OD) δ: 7.82 (s, 1H),
7.25 (m, 5H), 6.26 (t, J ) 6.8, 1H), 4.38 (m, 1H), 3.89 (m, 1H),
3.86 (s, 2H), 3.73 (dd, J ) 3.3, 9.6 Hz, 2H), 3.48 (d, J ) 6.6
Hz, 2H), 2.21 (m, 2H). 13C NMR (CD3OD) δ: 207.6, 152.3,
140.7, 135.8, 130.9, 129.7, 128.1, 110.0, 89.0, 86.6, 72.2, 62.9,
50.3, 50.0, 41.5, 40.8. IR (film): 3366, 1682, 1470, 1275, 1091,
1056. HRMS (FAB): C18H20N2O6 calcd (M + 1) 361.1400, found
361.1406.
5-(2-P h en yleth yl)-2′-d eoxyu r id in e (14).22b 3′,5′-Bis-O-
(tert-butyldimethylsilyl)-5-(2-phenylethyl)-2′-deoxyuridine (44.7
mg, 80 µmol), Et3N‚3HF (13 µL, 13 mg, 0.8 mmol), and THF
(0.8 mL) were placed in a 25-mL pear-shaped flask. The
reaction was allowed to stir for 24 h, at which time the solvents
were removed in vacuo. Flash column chromatography on
silica gel eluting with 19:1 EtOAc:MeOH (50 mL) afforded 14
as a white solid (23 mg, 90%). 1H NMR (CDCl3) δ: 7.51 (s,
1H), 7.17 (m, 5H), 6.2 (t, J ) 6.9, 1H), 4.24 (m, 1H), 3.82 (dd,
J ) 3.3, 6.6 Hz, 1H), 3.63 (qd, J ) 12, 3.3 Hz, 2H), 2.73 (m,
3H), 2.50 (m, 1H), 2.11 (m, 1H), 1.92 (m, 1H).
5-Eth a n a l-2′-d eoxyu r id in e (15). THF (800 µL) and Et3N‚
3HF (134 µL, 133 mg, 0.82 mmol) were added to a 25-mL
round-bottom flask containing 1723 (41 mg, 82 µmol). The
reaction was allowed to stir for 10 h at room temperature, at
which time the solvents were removed in vacuo. Flash chro-
matography on silica gel eluting with 10-20% MeOH:EtOAc
1
3′,5′-Bis-O-(ter t-b u t yld im et h ylsilyl)-5-(1-(3-p h en yl-2-
h yd r oxyp r op yl))-2′-d eoxyu r id in e. Ethanol (500 µL) was
added to a 10-mL pear-shaped flask containing 12 (21.3 mg,
36.2 µmol). The solution was cooled to 0 °C, and NaBH4 (1.4
mg, 36.2 µmol) was then added. The reaction was allowed to
stir for 12 h while warming to room temperature. The reaction
was quenched with H2O and washed with CH2Cl2 and H2O.
The aqueous layer was extracted with CH2Cl2. The organic
layers were combined, dried over Na2SO4, filtered, and con-
centrated in vacuo to yield a clear glass. Flash column
chromatography on silica gel eluting with 4:1 CH2Cl2:EtOAc
(75 mL) afforded the bis-TBDMS-protected alcohol (21.3 mg,
afforded 15 as a clear glass (16.4 mg, 74%). H NMR (D2O) δ:
9.60 (s, 0.3 H), 7.68 (s, 1H), 6.23 (t, J ) 7 Hz, 1H), 5.18 (t,
J ) 5 Hz, 1H), 4.41 (m, 1H), 3.98 (m, 1H), 3.77 (m, 2H), 2.57
1
(d, 1H), 2.38 (m, 2H). H NMR (CD3OD) δ: 7.80 (d, 1H), 6.27
(t, J ) 7 Hz, 1H), 4.74 (t, J ) 5 Hz, 1H), 4.39 (m, 1H), 3.91 (m,
1H), 3.75 (dd, 2H), 3.36 (s, 3H), 2.55 (m, 2H), 2.23 (m, 2H). IR
(film): 3374, 2928, 1682, 1471, 1276, 1094, 1052 cm-1. LRMS
(FAB): C11H14N2O6 calcd 289.3 (M+ + H), found 289.1.
3′,5′-Di-(ter t-bu tyld im eth ylsilyl)-5-(3,3′-d im eth yl-2-oxo-
bu tyl)-2′-d eoxyu r id in e (9). To a solution of the protected 2′-
deoxyuridine (0.25 g, 0.55 mmol) in THF (20 mL) was added
TMEDA (0.16 g, 1.37 mmol), followed by s-BuLi (1.05 mL of
1.3 M in cyclohexane, 1.37 mmol) at -78 °C. After 1 h of
stirring at -78 °C, 1-bromopinacolone (0.49 g, 2.74 mmol) in
THF (3 mL) was added to the reaction mixture which was
allowed to warm to room temperature. The reaction mixture
was quenched with saturated NH4Cl solution, followed by H2O.
The aqueous layer was extracted with EtOAc. The combined
organic layers were washed with water, brine, dried over Na2-
SO4, and then evaporated under reduced pressure to give a
brown oil. Flash chromatography (eluent; hexanes:ether, 3:1)
1
99.5%) as a 2:1 mixture of diastereomers: mp 50-53 °C. H
NMR (CDCl3) δ: 8.54 (bs, 1H), 7.50 (s, 0.6H) 7.44 (s, 0.4H),
7.28 (m, 5H), 6.30 (m, 1H), 4.39 (m, 1H), 4.03 (bs, 1H), 3.93
(m, 1H), 3.81 (dd, J ) 3, 11.4 Hz, 1H), 3.73 (dd, J ) 3, 11.4
Hz, 1H), 2.80-2.62 (m, 4H), 2.43 (m, 1H), 2.25 (m, 1H), 2.00
(m, 1H), 0.90 (s, 18H), 0.08 (s, 12H). 13C NMR (CDCl3) δ: 164.7,
164.4, 150.1, 150.0, 138.4, 138.4, 138.1, 138.0, 129.7, 128.7,
126.7, 112.0, 111.9, 88.2, 88.0, 85.5, 85.2, 72.7, 72.4, 71.8, 71.5,
63.3, 63.2, 44.2, 44.1, 41.5, 41.3, 35.3, 35.0, 26.1, 26.0, 18.6,
18.2, -4.4, -4.6, -5.1, -5.2. IR (film): 3185, 2953, 1711, 1471,
1116, 1062, 836 cm-1. HRMS (FAB): C30H50N2O6Si2 calcd
(M+ + H) 591.3286, found 591.3284.
1
yielded 9 (60 mg, 20%) as a pale brown oil. H NMR (CDCl3)
δ: 8.08 (s, 1H), 6.26 (dd, J ) 5.7, 7.5 Hz, 1H), 4.91 (s, 2H),
4.36 (m, 1H), 3.95 (q, J ) 2.2 Hz, 1H), 3.87 (dd, J ) 2.8, 11.6
Hz, 1H), 3.74 (dd, J ) 2.2, 11.6 Hz, 1H), 2.29 (ddd, J ) 2.6,
5.7, 13.1 Hz, 1H), 2.00 (m, 1H), 1.23 (s, 9H), 0.91 (s, 9H), 0.86
5-(1-(3-P h en yl-2-h yd r oxyp r op yl))-2′-d eoxyu r id in e (13).
The bis-O-TBDMS-protected alcohol (33 mg, 55.9 µmol), THF