Md. Shahidul Islam et al. / Bioorganic Chemistry 59 (2015) 145–150
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4.3.2. Synthesis of Z-L-Ab7-QA (10)
4.6. Synthesis of (Z-L-Am7(S-)-QA)2 (4)
To a cooled solution of Z-
L-Ab7-OH (9) (3.45 g, 9.7 mmol) in
anhydrous DCM (20 mL), DCC (0.6 equiv, 1.20 g, 5.8 mmol) was
added and stirred for 1 h. 8-aminoquinoline (1.39 g, 9.7 mmol)
was added and stirred for 3 h. The reaction mixture was cooled
again and DCC (0.6 equiv, 1.20 g, 5.8 mmol) was added and stirred
for 12 h at room temperature. After completion of the reaction,
DCM was evaporated and the residue was dissolved in ethyl
acetate and successively washed with 10% citric acid, 4% sodium
bicarbonate and brine respectively. The ethyl acetate solution
was dried over anhydrous MgSO4 and concentrated to remain an
oily substance which was purified by silica gel chromatography
using a mixture of chloroform and methanol (99:1) and crystal-
lized with a mixture of ether and petroleum ether (1:6, v/v) to yield
To a cooled solution of Z-
L
-Am7(Ac)-QA (1) (0.48 g, 1 mmol)
in DMF (10 mL), 40% solution of MeNH2/methanol (1 mL,
9 mmol) was added and stirred at room temperature for 5 h
under argon. DMF was evaporated and the residue was
dissolved in DMF (25 mL) to which iodine (1 equiv, 0.253 g,
1 mmol) solution in ethanol was added drop wise. After comple-
tion of the reaction, DMF was evaporated and the residue was
dissolved in ethyl acetate and washed with brine. The ethyl
acetate solution was dried over anhydrous MgSO4 and concen-
trated to an oily substance which was subjected to gel filtration
to get the crystalline solid (Z-L-Am7(S-)-QA)2 (4) (0.38 g,
0.86 mmol, 86%). Analytical RP HPLC, retention time 7.88 min,
purity 100%. HRMS (FAB, m/z): (M + H)+ found: 873.3457 (calcd
for C48H53N6O6S2: 873.3468).
Z-
L-Ab7-QA (10) (4.03 g, 8.34 mmol, 86%). Analytical RP HPLC,
retention time 8.07 min, 100%.
4.7. HDACs preparation and enzyme activity assay
4.3.3. Synthesis of Z-L-Am7(Ac)-QA (1)
To a solution of Z-
L
-Ab7-QA (10) (3.81 g, 7.9 mmol) in DMF
In a 100-mm dish, 293T cells (1–2 Â 106) were grown for 24 h
(63 mL), potassium thioacetate (1.5 equiv, 1.35 g, 11.8 mmol) was
added and stirred for 12 h at room temperature. After completion
of the reaction, DMF was evaporated and the residue was dissolved
in ethyl acetate and successively washed with 10% citric acid and
brine. The ethyl acetate solution was dried over anhydrous
MgSO4 and concentrated to remain an oily substance which was
purified by silica gel chromatography using a mixture of chloro-
form and methanol (99:1) and crystallized with a mixture of ether
and transiently transfected with 10 lg each of the vector
pcDNA3-HDAC1 for human HDAC1, pcDNA3-HDAC4 for human
HDAC4, or pcDNA3-mHDA2/HDAC6 for mouse HDAC6, using the
LipofectAMINE2000 reagent (Invitrogen). After successive cultiva-
tion in DMEM for 24 h, the cells were washed with PBS and lysed
by sonication in lysis buffer containing 50 mM Tris–HCl (pH 7.5),
120 mM NaCl, 5 mM EDTA, and 0.5% NP40. The soluble fraction col-
lected by micro centrifugation was precleared by incubation with
protein A/G plus agarose beads (Santa Cruz Biotechnologies, Inc.).
After the cleared supernatant had been incubated for 1 h at 4 °C
and petroleum ether (1:6, v/v) to yield Z-L-Am7(Ac)-QA (1) (2.57 g,
5.36 mmol, 68%). Analytical RP HPLC, retention time 7.68 min, pur-
ity 100%. HRMS (FAB, m/z): (M + H)+ found: 480.1937 (calcd for
with 4 lg of an anti-FLAG M2 antibody (Sigma–Aldrich Inc.) for
C
26H29N3O4S: 480.1957).
4.4. Synthesis of Z- -Am7(AcEtMe)-QA (2)
To a cooled solution of Z- -Am7(Ac)-QA (1) (1.17 g, 2.45 mmol)
HDAC1, HDAC4 and HDAC6, the agarose beads were washed three
times with lysis buffer and once with histone deacetylase buffer
consisting of 20 mM Tris–HCl (pH 8.0), 150 mM NaCl, and 10%
glycerol. The bound proteins were released from the immune com-
L
L
plex by incubation for 1 h at 4 °C with 40
(Sigma–Aldrich Inc.) in histone deacetylase buffer (200
supernatant was collected by centrifugation. For the enzyme assay,
10 L of the enzyme fraction was added to 1 L of fluorescent sub-
strate (2 mM Ac-KGLGK(Ac)-MCA) and 9 L of histone deacetylase
buffer, and the mixture was incubated at 37 °C for 30 min. The
reaction was stopped by the addition of 30 L of trypsin (20 mg/
lg of the FLAG peptide
in DMF (25 mL), 40% solution of MeNH2/MeOH (3 mL, 27 mmol)
was added and stirred at room temperature for 5 h under argon.
DMF was evaporated and the residue was dissolved in pyridine
(5 mL) to which 2-(2-methoxyethoxy)acetyl chloride (1 equiv,
2.45 mmol, 0.373 g) was added and stirred overnight at room tem-
perature. After completion of the reaction, pyridine was evapo-
rated and the residue was dissolved in ethyl acetate and washed
with brine. The ethyl acetate solution was dried over anhydrous
MgSO4 and concentrated to an oily substance which was subjected
lL). The
l
l
l
l
mL) and incubated at 37 °C for 15 min. The released amino methyl
coumarin (AMC) was measured using a fluorescence plate reader.
DTT was added simultaneously with drugs to the enzyme solu-
tions. The 50% inhibitory concentrations (IC50) were determined
as the means with SD calculated from at least three independent
dose response curves.
to gel filtration to get the oily Z-L-Am7(AcEtMe)-QA (2) (0.37 g,
0.67 mmol, 27%). Analytical RP HPLC, retention time 8.19 min,
purity 100%. HRMS (FAB, m/z): (M + H)+ found: 554.2350 (calcd
for C29H35N3O6S: 554.2325).
4.8. The p21 promoter assay
4.5. Synthesis of Z-L-Am7(betaMe)-QA (3)
The human wild-type p21 promoter luciferase fusion plasmid,
WWP-Luc, was a kind gift from Dr. B. Vogelstein. A luciferase
reporter plasmid (pGW-FL) was constructed by cloning the 2.4 kb
genomic fragment containing the transcription start site into
HindIII and SmaI sites of the pGL3-Basic plasmid (Promega Co.,
Madison, WI). Mv1Lu (mink lung epitherial cell line) cells were
transfected with the pGW-FL and a phagemid expressing neomy-
cin/kanamycin resistance gene (pBK-CMV, Stratagene, La Jolla, CA)
with the Lipofectamine reagent (Life Technology, Rockville, MD
To a cooled solution of Z-
L
-Am7(Ac)-QA (1) (0.80 g, 1.67 mmol) in
DMF (17 mL), 40% solution of MeNH2/MeOH (2 mL, 18 mmol) was
added and stirred at room temperature for 5 h under argon. DMF
was evaporated and the residue was dissolved in DMF (50 mL) to
which 2-marcaptoethanol (10 equiv, 16.7 mmol, 1.17 mL) was
added and stirred. To this reaction mixture, iodine (5.5 equiv,
2.33 g, 9.19 mmol) solution in ethanol was added drop wise. After
completion of the reaction, DMF was evaporated and the residue
was dissolved in ethyl acetate and washed with brine. The ethyl
acetate solution was dried over anhydrous MgSO4 and concentrated
to an oily substance which was subjected to gel filtration to get the
USA). After the transfected cells had been selected by 400 lg/mL
Geneticin (G418, Life Technology), colonies formed were isolated.
One of the clones was selected and named MFLL-9. MFLL-9
expressed a low level of luciferase, of which activity was enhanced
by TSA in a dose-dependent manner. MFLL-9 cells (1 Â 105) cul-
tured in a 96-well multi-well plate for 6 h were incubated for
oily Z-L-Am7(betaMe)-QA (3) (0.52 g, 1.01 mmol, 60%). Analytical
RP HPLC, retention time 7.88 min, purity 100%. HRMS (FAB, m/z):
(M + H)+ found: 514.1833 (calcd for C26H31N3O4S2: 514.1834).