Med Chem Res (2012) 21:1825–1832
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748.245 (C–Cl). 1H NMR (300 MHz, DMSO, TMS): d
9.876 (s, 1H, NH), 7.778–7.396 (m, 4H, C6H4), 5.988 (s,
1H, CH), 3.98 (q, 2H, OCH2CH3), 2.351 (s, 3H, S-CH3),
2.193 (s, 3H, CH3), 1.11 (t, 3H, OCH2CH3).
(C=N),1185.04, 1132.01 (C–O–C). H NMR (300 MHz,
DMSO, TMS): d 9.87 (s, 1H, NH), 5.874 (s, 1H, CH), 3.98
(q, 2H, OCH2CH3), 3.83 (s, 9H, OCH3), 2.351 (s, 3H,
S-CH3), 2.193 (s, 3H, CH3), 1.11 (t, 3H, OCH2CH3).
Methyl 4-(4-chlorophenyl)-6-methyl-2-(methylthio)-
Ethyl 6-methyl-2-(methylthio)-1,4-dihydropyrimidine-
1,4-dihydropyrimidine-5-carboxylate (IIf)
5-carboxylate (IIk)
Yield: 57.89%. mp 130–132°C. IR (KBr), m, cm-1: 3310.21
(NH), 2945.73 (Ar C–H), 1665.23 (C=O), 1475.28 (C=N),
777.172 (C–Cl). 1H NMR (300 MHz, DMSO, TMS): d 9.876
(s, 1H, NH), 7.778–7.396 (m, 4H, C6H4), 5.988 (s, 1H, CH),
3.708 (s, 3H, OCH3), 2.351 (s, 3H, S-CH3), 2.193 (s, 3H, CH3).
Yield: 65.47%. mp 210–211°C. IR (KBr), m, cm-1: 3204.15
(NH), 2992.45 (Ar C–H), 1659.45 (C=O), 1505.17 (C=N).
1H NMR (300 MHz, DMSO, TMS):d 9.179 (s, 1H, NH),
4.723 (S, 2H, CH2), 4.089 (q, 2H, OCH2CH3), 2.402 (s, 3H,
S-CH3), 2.173 (s, 3H, CH3), 1.222 (t, 3H, OCH2CH3).
Ethyl 4-[4-(dimethylamino)phenyl]-6-methyl-2-
(methylthio)-1,4-dihydropyrimidine-5-carboxylate
(IIg)
Methyl 6-methyl-2-(methylthio)-1,4-
dihydropyrimidine-5-carboxylate (IIl)
Yield: 54.05%. mp 198–200°C. IR (KBr), m, cm-1: 3314.07
(NH), 3008.41 (Ar C–H), 1665.23 (C=O),1587.13 (C=N).
1H NMR (300 MHz, DMSO, TMS):d 9.17 (s, 1H, NH),
4.723 (S, 2H, CH2), 3.705 (s, 3H, OCH3), 2.402 (s, 3H,
S-CH3), 2.173 (s, 3H, CH3).
Yield: 62.93%. mp 124–126°C. IR (KBr), m, cm-1: 3319.86
(NH), 2975.62 (Ar C–H), 1653.66 (C=O), 1515.78 (C=N).
1H NMR (300 MHz, DMSO, TMS): d 9.876 (s, 1H, NH),
7.532–6.577 (m, 4H, C6H4), 5.988 (s, 1H, CH), 3.98 (q, 2H,
OCH2CH3), 2.831 (s, 6H, N(CH3)2), 2.351 (s, 3H, S-CH3),
2.193 (s, 3H, CH3), 1.11 (t, 3H, OCH2CH3).
Docking studies
Methyl 4-[4-(dimethylamino)phenyl]-6-methyl-2-
(methylthio)-1,4-dihydropyrimidine-5-carboxylate
(IIh)
Docking studies of the title compounds was done on VLife
MDS 3.5 using grid-based docking method to ascertain
calcium channel blocking activity. The involvement of
b-subunit in trafficking of a1 subunit to plasma membrane
suggests that an inhibitor of this complex could have sig-
nificant therapeutic potential. Therefore, AID-b complex of
L-type calcium channel is selected as a biological target for
carrying out the docking study of title compounds. The
crystal structure of AID-b complex was obtained from
protein data bank, opened in MDS sheet, saved by removing
water molecule and used further for docking purpose.
The 2D structures of the compounds were built and then
converted into the 3D with the help of VLife MDS 3.5
software. The 3D structures were then energetically mini-
mized up to the rms gradient of 0.01 using Merck Molec-
ular Force Field (MMFF).
Yield: 75.75%. mp 214–216°C. IR (KBr), m, cm-1: 3319.86
(NH), 2809.78 (Ar C–H), 1671.02 (C=O), 1557.24 (C=N).
1H NMR (300 MHz, DMSO, TMS): d 9.876 (s, 1H, NH),
7.532–6.577 (m, 4H, C6H4), 5.988 (s, 1H, CH), 3.708 (s,
3H, OCH3), 2.831 (s, 6H, N(CH3)2), 2.351 (s, 3H, S-CH3),
2.193 (s, 3H, CH3).
Ethyl 6-methyl-2-(methylthio)-4-(4-nitrophenyl)-1,4-
dihydropyrimidine-5-carboxylate (IIi)
Yield: 83.68%. mp 180–182°C. IR (KBr), m, cm-1: 3227.29
(NH), 2980.45 (Ar C–H), 1694.16 (C=O), 1522.52 (Asy
Ar-NO2), 1345.11 (Sym Ar-NO2), 847.561 (C–N). 1H
NMR (300 MHz, DMSO, TMS): d 9.876 (s, 1H, NH),
7.89–8.10 (m, 4H, C6H4), 5.988 (s, 1H, CH), 3.98 (q, 2H,
OCH2CH3), 2.351 (s, 3H, S-CH3), 2.193 (s, 3H, CH3), 1.11
(t, 3H, OCH2CH3).
By using cavity determination option of software, cavi-
ties of enzyme were determined. The cavities in the receptor
were mapped to assign an appropriate active site, the basic
feature used to map the cavities was the surface mapping of
the receptor and identifying the geometric voids as well as
scaling the void for its hydrophobic characteristics. Hence,
all the cavities that are present in receptor are identified and
ranked based on their size and hydrophobic surface area.
Cavity no. 1 is selected for docking. The active site for
Ethyl 6-methyl-2-(methylthio)-4-(3,4,5-
trimethoxyphenyl)-1,4-dihydropyrimidine-5-
carboxylate (IIj)
Yield: 75.14%. mp 206–208°C. IR (KBr), m, cm-1: 3298.64
(NH), 2980.45 (Ar C–H), 1659.45 (C=O), 1576.52
docking was defined as all atoms within 5 A radius. Using
˚
biopredicta tool of software, open docking and then batch
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