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A. Omran et al. / Bioorganic & Medicinal Chemistry Letters xxx (2018) xxx–xxx
To probe the carbon chain-length tolerance of the hydrophobic
region of the SBP we have synthesized a homologous series of race-
mic N-alkyl analogues (5–10 carbons in length) for comparison to
the known N-propyl 3 and N-butyl 4 analogues.6a,9 While the N-
alkyl substituents of the homologous series of may not be
considered true secondary pharmacophores, we hoped this study
would determine the optimal chain length from this specific
pyrrolidine scaffold into the SBP. In addition, since the D3R SBP is
predominantly hydrophobic, we chose this lipophilic N-alkyl
series with the hope of potentially gaining some increase in D3R
affinity and selectivity though resulting hydrophobic interactions
with the alkyl chains. Target compounds were synthesized
according to the reductive alkylation or amide reduction
chemistries outlined in Scheme 1.
D2 Ki = 3.9 - 100 nM
D3 Ki = 0.5 – 8.5 nM
D2 Ki = 137 19 nM
D3 Ki = 132 16 nM
D2 Ki = 68 9 nM
D3 Ki = 52 8 nM
Fig. 1. Dopamine D2/D3 receptor ligands. Pramipexole1(Ref. 1f), 3-PPP 2(Ref. 8d),
Pyrrolidineanalogue 3(Ref. 9).
binding pocket (SBP) which has attracted the attention of a number
of groups for generating selectivity over the D2R.10 The D3R SBP
connects to the orthosteric site through a largely hydrophobic
region (near transmembrane helices 1, 2, and 7) and extends out
toward extracellular loops I and II (which open to the outer aque-
ous space). These structural studies along with comparative ligand
docking analyses, molecular dynamics simulations, and SAR stud-
ies from several groups using the privileged 4-phenylpiperazine
class of selective D3 ligands to occupy the OBS while extending
functionality into the SBP, suggest a longer, linear OBS-SBP orien-
tation in the D3R compared to a bent orientation in the D2R.10,12
To further investigate the 3-(3-hydroxyphenyl)pyrrolidine scaf-
fold for targeting the D3R we envisioned a ligand design based
upon extending functionality from the OBS-binding scaffold into
the SBP to enhance both D3R affinity and selectivity over D2R. This
type of bitopic ligand design has been employed by a number of
groups to afford D3R antagonists and partial agonists with other
core templates.12,13 In addition, there is some literature evidence
that relates allosteric interactions within the SBP via the bitopic
ligand approach to biased signaling.14 Biased signaling leading to
functional selectivity has been shown to govern the tolerance
and slow response termination properties of the D3R15 and new
bitopic ligands maybe particularly useful to more fully investigate
these pathways.
Thus, cinnamate 516 was converted to nitro-ester analogue 6 by
a literature method involving the conjugate addition of nitro-
methane mediated by DBU.17 Compound 6 was converted to the
lactam 7 in one pot by sequential reduction of the nitro-group with
Zn powder in 1 N HCl followed by neutralization and heating to
effect cyclization. The lactam 7 underwent smooth reduction with
lithium aluminum hydride to afford the key 3-(3-methoxyphenyl)
pyrrolidine 8. Reductive alkylation of 8 with pentanal, octanal,
nonanal, and decanal afforded compounds 9a-d. Methyl deprotec-
tion of each of the compounds using boron tribromide afforded the
corresponding phenol analogues 10a-d. The amide reduction route
was devised for derivatives for which the precursor acid chloride
was more economical to purchase than the corresponding alde-
hyde required for the reductive amination route. Thus, for the
amide reduction route key intermediate 8 was acylated under
Schotten-Baumann conditions with hexanoyl and heptanoyl chlo-
rides to afford amides 11a (R2 = pentyl) and 11b (R2 = hexyl),
respectively. These amide derivatives were then converted to ana-
logues 12a and 12b by reduction with lithium aluminum hydride.
Finally, compounds 12a and 12b were deprotected by treatment
Scheme 1. Synthesis of N-alkyl-3-(hydroxyphenyl)pyrrolidinehomologous series, reductive amination route. Reagents and conditions: (a) nitromethane (18 equiv), DBU (5
equiv), 0 °C, 1 h, 20 °C, 16 h, 91%; (b) Zn (23 equiv), 1 N HCl, IPA, 2 h; (c) NaHCO3(to pH ꢀ 7.5), 70 °C, 1 h, 79% over 2 steps; (d) LiAlH4(2 equiv), THF, 0 °C, 1 h, then heated at 65
0 °C, 2 h, 77%; (e) aldehyde (1 equiv), NaBH(OAc)3(1.5 equiv), 20 °C, 16 h, R = n-pentyl, 97%, R = n-octyl, 53%, R = n-nonyl, 58%, R = n-decyl, 59%; (f) BBr3, (2 equiv), CH2Cl2, 0 °C,
1 h, 20 °C, 2 h, R = n-pentyl, 12%, R = n-octyl, 98%, R = n-nonyl, 36%, R = n-decyl, 61%. Amide reduction route. Reagents and conditions: (g) acid chloride (1.1 equiv),
Na2CO3(1.75 equiv), H2O, CH2Cl2, 20 °C, 2 h, R = n-pentyl(hexanoylchloride), 84%, R = n-hexyl (heptanoylchloride), 77%; (d) LiAlH4(2.2 equiv), THF, 0 °C, 1 h, 65 0 °C, 2 h, R = n-
hexyl, 62%, R = n-heptyl, 77%; (f) BBr3, (2.3 equiv), CH2Cl2, 0 °C, 1 h, 20 °C, 2 h, R = n-hexyl, 39%, R = n-heptyl, 44%.