Substituent control of hydrogen bonding in palladium(II)-pyrazole complexes

Article abstract of DOI:10.1021/ic026104n

Inter- and intramolecular hydrogen bonding of an N-H group in pyrazole complexes was studied using ligands with two different groups at pyrazole C-3 and C-5. At C-5, groups such as methyl, i-propyl, phenyl, or tert-butyl were present. At C-3, side chains L-CH₂- and L-CH₂CH₂- (L = thioether or phosphine) ensured formation of chelates to a cis-dichloropalladium(II) fragment through side-chain atom L and the pyrazole nitrogen closest to the side chain. The significance of the ligands is that by placing a ligating side chain on a ring carbon (C-3), rather than on a ring nitrogen, the ring nitrogen not bound to the metal and its attached proton are available for hydrogen bonding. As desired, seven chelate complexes examined by X-ray diffraction all showed intramolecular hydrogen bonding between the pyrazole N-H and a chloride ligand in the cis position. In addition, however, intermolecular hydrogen bonding could be controlled by the substituent at C-5: complexes with either a methyl at C-5 or no substituent there showed significant intermolecular hydrogen bonding interactions, which were completely avoided by placing a tert-butyl group at C-5. The acidity of two complexes in acetonitrile solutions was estimated to be closer to that of pyridinium ion than those of imidazolium or triethylammonium ions.

Full text of DOI:10.1021/ic026104n

Inorg. Chem. 2003, 42, 3347−3355
Substituent Control of Hydrogen Bonding in Palladium(II)−Pyrazole
Complexes
,†
Douglas B. Grotjahn,* Sang Van,† David Combs,†,‡ Daniel A. Lev,† Christian Schneider,†,§
Christopher D. Incarvito,| Kim-Chung Lam,| Gene Rossi,|,§ Arnold L. Rheingold,| Marc Rideout,†,§
Christoph Meyer,†,§ Genaro Hernandez,†,§ and Lupe Mejorado†,§
Department of Chemistry, 5500 Campanile DriVe, San Diego State UniVersity,
San Diego, California 92182-1030, and Department of Chemistry and Biochemistry,
UniVersity of Delaware, Newark, Delaware 19716
Received October 12, 2002
Inter- and intramolecular hydrogen bonding of an N−H group in pyrazole complexes was studied using ligands with
two different groups at pyrazole C-3 and C-5. At C-5, groups such as methyl, i-propyl, phenyl, or tert-butyl were
present. At C-3, side chains L−CH − and L−CH CH − (L ) thioether or phosphine) ensured formation of chelates
2
2
2
to a cis-dichloropalladium(II) fragment through side-chain atom L and the pyrazole nitrogen closest to the side
chain. The significance of the ligands is that by placing a ligating side chain on a ring carbon (C-3), rather than on
a ring nitrogen, the ring nitrogen not bound to the metal and its attached proton are available for hydrogen bonding.
As desired, seven chelate complexes examined by X-ray diffraction all showed intramolecular hydrogen bonding
between the pyrazole N−H and a chloride ligand in the cis position. In addition, however, intermolecular hydrogen
bonding could be controlled by the substituent at C-5: complexes with either a methyl at C-5 or no substituent
there showed significant intermolecular hydrogen bonding interactions, which were completely avoided by placing
a tert-butyl group at C-5. The acidity of two complexes in acetonitrile solutions was estimated to be closer to that
of pyridinium ion than those of imidazolium or triethylammonium ions.
Introduction
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amide, accelerating amide hydrolysis by a factor of more
than 1011.6,7
A major focus of ongoing work in our laboratories is the
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metal complexes,1-3 and how such features can improve
catalysis.1 Metalloenzymes are an inspiration for this work.4
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combined effects (cooperativity) of a Zn(II) ion and nearby
Brønsted-Lowry acids and bases are responsible for facili-
Bioorganic and bioinorganic chemists have studied coop-
erativity between metal ions and organic functional groups
such as phenol,8 imidazole or imidazolium,9 and alkylamine
or -ammonium moieties,10,11 the relevant acidic forms of
which are characterized by pKa values in the range 7-10.
Organometallic examples of cooperativity or bifunctional
catalysis have emerged in the past 10 years. Here, a transition
metal hydride and an N-H or O-H12-17 group act in concert,
* To whom correspondence should be addressed. E-mail: grotjahn@
chemistry.sdsu.edu.
† San Diego State University.
‡ Current address: Trilink Biotechnologies, San Diego, CA.
§ Undergraduate research participant.
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10.1021/ic026104n CCC: $25.00 © 2003 American Chemical Society
Published on Web 04/22/2003
Inorganic Chemistry, Vol. 42, No. 10, 2003 3347

Grotjahn et al.
Chart 1. Pyrazole Coordination Modes
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3348 Inorganic Chemistry, Vol. 42, No. 10, 2003

Hydrogen Bonding in Pd(II)-Pyrazole Complexes
ported.63 Solvents for manipulations of phosphines were deoxy-
genated by bubbling nitrogen through them. Reactions were
performed under nitrogen using a combination of Schlenk and inert-
atmosphere glovebox techniques, and workups were done in air
unless otherwise specified.
Scheme 1
NMR spectra were recorded at 200 or 500 MHz with Varian
spectrometers at 30 °C. 1H and 13C NMR chemical shifts are
reported in ppm downfield from tetramethylsilane and referenced
to residual solvent resonances [1H NMR: 7.27 for CHCl3 in CDCl3
and 2.50 for CHD2SOCD3 in (CD3)2SO. 13C NMR: 77.23 for
CDCl3 and 39.51 for CD3SOCD3], where 1H NMR signals are given
followed by multiplicity, coupling constants J in hertz, integration
in parentheses. For complex coupling patterns, the first coupling
constant listed corresponds to the first splitting listed, e.g., for (dt,
J ) 3.2, 7.9, 1 H), the doublet exhibits the 3.2-Hz coupling constant.
31P{1H} NMR chemical shifts were referenced to external 85% H3-
PO4 (aq).
are in the range 5.98-7.21, similar to that of protonated
imidazole, but much lower than the pKa of pyrazole itself
(14.2).61 One report appearing in 1998, as we began our
work, showed the potential difficulties of maintaining
structures such as A-D under basic conditions: Cu(II)
complexes of type A undergo deprotonation and dimerization
(forming bridging structures similar to E) rather than catalyze
phosphate ester hydrolysis.62
IR spectra were obtained in KBr disks or in solutions held in
NaCl cells using an FT-IR spectrophotometer (either Nicolet Nexus
670 or Perkin-Elmer 1600 series). Elemental analyses were
performed at NuMega Resonance Labs (San Diego).
Complex 2c. To PdCl2(NCCH3)2 (0.151 g, 0.58 mmol) was
added deoxygenated methanol (3 mL). To the resulting orange
solution was added a solution of phosphine-pyrazole 1c (0.171 g,
0.61 mmol) in methanol (3 mL). After the reaction mixture stirred
for 16 h at room temperature, a yellow precipitate formed. The
reaction slurry was filtered, and the yellow-orange solid was washed
with CH2Cl2 (1 × 10 mL). The resulting yellow solid was placed
under high vacuum to yield 2c (0.96 g, 0.21 mmol, 36%) as a
powder. Slow evaporation of dichloromethane from a dilute solution
of 2c in a mixture of methanol/dichloromethane (1:1) afforded
crystals suitable for X-ray analysis. 1H NMR [(CD3)2SO, 500 MHz]
δ 12.65 (s, 1 H, NH), 7.90-7.85 (m, 4 H, ortho H), 7.66-7.64
(m, 2 H, para H), 7.59-7.55 (m, 4 H, meta H), 6.30 (s, 1 H, H4),
3.97 (d, 2 H, J ) 13.0 Hz, CH2P), 2.29 ppm (s, 3 H, pzCH3). 13C-
{1H} NMR [(CD3)2SO, 125.7 MHz] δ 152.5 (d, J ) 8.7 Hz), 144.7,
133.0 (d, J ) 11.1 Hz), 132.1, 129.0 (d, J ) 11.6 Hz), 127.6 (d, J
) 55.7 Hz, Cipso), 104.1 (d, J ) 12.8 Hz), 28.8 (d, J ) 32.3 Hz),
11.0 ppm. 31P{1H} NMR [(CD3)2SO, 80.95 MHz] δ 46.81 ppm.
IR (KBr) 3222, 3121, 2916, 1558, 1437, 1391, 1278, 1183, 1103,
1051 cm-1. Elemental analysis calcd (%) for C17H17Cl2N2PPd
(457.63): C, 44.62; H, 3.74; N, 6.12. Found: C, 44.23; H, 3.62;
N, 5.84.
In our pursuit of structures A or B in which an N-H bond
is retained, we have reported preparation of pyrazole ligands
1a and 1b (Scheme 1) featuring a soft thioether or phosphine
group.2 (For clarity in this paper, in all cases where two
tautomeric forms of a pyrazole are possible and probable,
e.g., 1, only one form will be shown.) In the crystal structures
of Pd(II) species of type B (e.g., 2), it was obvious that a
lack of steric hindrance at the pyrazole N-H allowed
multiple hydrogen bonding interactions, both the desired
intramolecular one shown, as well as undesired inter-
molecular ones. Therefore, we have begun to investigate new
pyrazole ligands as schematically shown in I (Scheme 1),
where the bulk of a substituent at C-5 is expected to control
approach of all but cis-oriented ligand L′ to the pyrazole
N-H. The work reported here uses our recently developed
synthesis of pyrazole ligands63 to place even a tert-butyl or
adamantyl group at C-5. Herein, the crystal structures of
seven PdCl2 complexes show that changing the group at C-5
allows control of the structure of the complexes and their
intermolecular hydrogen bonding. In addition, because so
little is known about the acidity of coordinated pyrazoles,59,60
we have examined some of the Pd(II) species herein. These
results are expected to make pyrazoles and pyrazolates more
versatile ligands in catalysis, supramolecular chemistry, and
other fields.
Complex 2d. The phosphine ligand 1d (59.3 mg, 0.184 mmol)
in CH2Cl2 was allowed to stir with PdCl2(CH3CN)2 (49.2 mg, 0.190
mmol). Within 15 min the mixture became a clear yellow solution.
After 20 h, the solvent was removed in vacuo. To the residue was
1
added hexanes, giving an orange solid (71.7 mg, 72%). H NMR
(CDCl3, 500 MHz) δ 11.51 (s, 1 H, NH), 7.90 (ddd, J ) 1.1, 8.2,
13.1 Hz, 4 H, ortho H), 7.59 (tt, J ) 1.1, 7.5 Hz, 2 H, para H),
7.48-7.52 (m, 4 H, meta H), 6.23 (d, J ) 2.2 Hz, 1 H, H4), 5.27
(s, 1 H, 0.5 CH2Cl2), 3.65 (d, J ) 12.1 Hz, 2 H, CH2P), 1.33 ppm
[s, 9 H, C(CH3)3]. 13C{1H} and DEPT NMR (CDCl3, 50.3 MHz)
δ 156.8 (C), 152.4 (d, J ) 6.7 Hz, C), 133.3 (d, J ) 11.2 Hz, CH),
132.4 (d, J ) 3.2 Hz, CH), 129.3 (d, J ) 12.0 Hz, CH), 127.7 (d,
J ) 56.5 Hz, Cipso), 101.6 (d, J ) 12.6 Hz, CH), 53.6 (CH2Cl2),
31.9 [C(CH3)3], 31.1 (d, J ) 32 Hz, CH2P), 29.75 [C(CH3)3] ppm.
31P{1H} NMR (CDCl3, 80.95 MHz) δ 45.1 ppm. IR (CH2Cl2, NaCl)
3312, 3047, 2973, 1548, 1438, 1208, 1105 cm-1. Elemental analysis
calcd (%) for C20H23Cl2NPPd‚0.5 CH2Cl2 (499.69 + 42.47): C,
45.42; H, 4.46; N, 5.17. Found: C, 45.91; H, 4.22; N, 5.36.
Experimental Section
General. Bis(acetonitrile)palladium(II) dichloride was either
purchased or prepared in a manner similar to that reported for the
benzonitrile analogue.64 Ligands were made as previously re-
(60) Winter, J. A.; Caruso, D.; Shepherd, R. A. Inorg. Chem. 1988, 27,
1086-1089.
(61) Yagil, G. Tetrahedron 1967, 23, 2855-2861.
(62) Deters, R.; Kra¨mer, R. Inorg. Chim. Acta 1998, 269, 117-124.
(63) Grotjahn, D. B.; Van, S.; Combs, D.; Lev, D.; Schneider, C.; Rideout,
M.; Meyer, C.; Hernandez, G.; Mejorado, L. J. Org. Chem. 2002, 67,
9200-9209.
(64) Doyle, J. R.; Slade, P. E.; Jonassen, H. B. Inorg. Synth. 1960, 6, 216-
219.
Inorganic Chemistry, Vol. 42, No. 10, 2003 3349

Grotjahn et al.
2966, 2877, 1550, 1467, 1291, 1156, 1050, 805, 760, 649 cm-1
Complex 2e. To a solution of thioether ligand 2e (0.199 g, 1.08
mmol) in methanol (7 mL) under nitrogen atmosphere was added
at room temperature PdCl2(CH3CN)2 (0.280 g, 1.08 mmol). After
the reaction mixture stirred for 10 h, an orange-yellow precipitate
had formed. The reaction mixture was filtered, and the solid was
washed with cold methanol (1 mL). The solid residue was placed
under vacuum to give 2e (0.336 g, 0.930 mmol, 86%) as a yellow
solid. Crystals suitable for X-ray analysis were grown from the
.
Elemental analysis calcd (%) for C12H22Cl2N2PdS (403.71): C,
35.70; H, 5.49; N, 6.94. Found: C, 35.84; H, 5.42; N, 6.81.
Complex 5d. Solid PdCl2(CH3CN)2 (135 mg, 0.52 mmol) was
added to a stirred solution of phosphine 4d (175 mg, 0.52 mmol)
dissolved in methanol (10 mL). After stirring the solution for 2 h,
solvent was removed on a rotary evaporator. The orange solid
remaining was dissolved in a minimum amount of methylene
chloride, and an equal volume of diethyl ether was added. The light
yellow precipitate was filtered and rinsed with diethyl ether (2 ×
10 mL), followed by pentane (10 mL). Product 5d (215 mg, 0.42
mmol, 81%) was obtained as a yellow solid. X-ray quality crystals
were obtained by recrystallization from methylene chloride with
1
diffusion of acetone into a solution of 2e in (CD3)2SO. H NMR
[(CD3)2SO, 500 MHz] δ 12.29 (s, 1 H, NH), 6.37 (s, 1 H, H4),
4.28 (d, J ) 16.5 Hz, 1 H, CHHS), 3.96 (d, J ) 16.5 Hz, 1 H,
CHHS), 2.59 (s, 3 H, SCH3), 1.29 ppm [s, 9 H, C(CH3)3]. 13C{1H}
NMR [(CD3)2SO, 125.7 MHz] δ 157.2, 155.0, 101.5, 35.3, 31.5,
29.2, 23.0 ppm. IR (KBr) 3366, 3125, 2964, 2924, 2864, 1611,
1546, 1450, 1360, 1214, 1054, 807, 706, 576 cm-1. Elemental
analysis calcd (%) for C9H16Cl2N2PdS (361.61): C, 29.89; H, 4.46;
N, 7.75. Found: C, 29.91; H, 4.35; N, 7.78.
1
diethyl ether diffusion. H NMR (CDCl3, 200 MHz) δ 12.74 (bs,
1 H, NH), 7.88-8.00 (m, 4 H, ortho H), 7.42-7.58 (m, 6 H, meta
and para H), 5.95 (d, 1 H, J ) 2.4 Hz, H4), 2.70-2.90 (m, 2 H),
2.28-2.40 (m, 2 H), 1.32 ppm [s, 9 H, C(CH3)3]. 31P{1H} NMR
(CDCl3, 80.95 MHz) δ -6.30 ppm. 13C{1H} NMR (CDCl3, 50.3
MHz) δ 154.9, 147.6 (d, J ) 5 Hz), 134.1 (d, J ) 10.6 Hz), 132.1
(d, J ) 2.8 Hz, Cpara), 129.0 (d, J ) 11.8 Hz), 127.7 (d, J ) 60.8
Hz, Cipso), 104.2, 29.7, 27.8, 20.2, 19.4 ppm. IR (KBr) 3165, 2964,
1560, 1545, 1477, 1459, 1436, 1400, 1369, 1290, 1267, 1218, 1159,
1100, 1053, 998, 852, 829, 810, 745, 708 cm-1. Elemental analysis
calcd (%) for C21H25Cl2N2PPd (513.74): C, 49.10; H, 4.90; N, 5.45.
Found: C, 49.38; H, 4.76; N, 5.49.
Complex 2f. Ligand 2f (50.0 mg, 0.157 mmol) and PdCl2(CH3-
CN)2 (40.6 mg, 0.157 mmol) were stirred with methanol for 5 h.
The precipitate was filtered off. After drying under vacuum, 2f (35.2
mg, 57%) remained. 1H NMR (CDCl3, 500 MHz) δ 9.6 (br s, 1 H,
NH), 7.37 (dd, J ) 2, 8 Hz, 2 H, ortho H), 7.27 (dt, J ) 2, 7.5 Hz,
2 H, meta H), 7.19 (tt, J ) 1.5, 7.5 Hz, 1 H, para H), 6.01 (s, 1 H,
H4), 4.16 (s, 2 H, CH2S), 1.31 ppm [s, 9 H, C(CH3)3]. 13C{1H}
NMR (CDCl3, 125.7 MHz) δ 155.9, 146.9, 136.4, 129.4, 128.8,
126.2, 100.9, 31.2, 31.1, 30.2 ppm. 13C{1H} NMR [(CD3)2SO, 125.7
MHz] δ 157.5, 155.1, 130.4, 130.3, 130.0, 129.1, 101.4, 37.6, 31.6,
29.2. IR (KBr) 3397 (s), 3122, 2969, 2867, 1544, 1467, 1401, 1283,
1214, 1050, 883, 833, 750, 677 cm-1. Elemental analysis calcd
(%) for C14H18Cl2N2PdS (423.68): C, 39.69; H, 4.28; N, 6.61.
Found: C, 39.27; H, 4.20; N, 6.61.
Complex 5e. Solid PdCl2(CH3CN)2 (385 mg, 1.49 mmol) was
added to a stirred solution of thioether ligand 4e (294 mg, 1.49
mmol) in methanol (10 mL). After the solution was stirred for 30
min, the orange precipitate formed was filtered, washed with
methanol (2 × 5 mL), and air-dried. The product 5e (402 mg, 1.07
mmol, 72%) was obtained as an orange solid. X-ray quality crystals
were obtained by recrystallization from methanol. 1H NMR [(CD3)2-
SO, 500 MHz] δ 12.19 (s, 1 H), 6.27 (d, 1 H, 4JHH ) 2.5 Hz), 3.56
(m, 1 H), 2.63 (t, 2 H, 3JHH ) 5 Hz), 2.59 (s, 3 H), 1.76 (m, 1 H),
1.26 [s, 9 H, C(CH3)3]. 13C{1H} NMR [(CD3)2SO, 125.7 MHz] δ
155.1, 146.9, 103.0, 31.2, 29.2, 28.9, 23.9, 21.3 ppm. IR (KBr)
3322, 2962, 1560, 1543, 1467, 1438, 1412, 1366, 1277, 1240, 1219,
Complex 2g. To a solution of hydroxy-substituted ligand 2g
(0.066 g, 0.31 mmol) in methanol (5 mL) under nitrogen atmosphere
was added at room temperature PdCl2(CH3CN)2 (0.080 g, 0.31
mmol). After stirring 15 h, the reaction mixture was concentrated
and the residue recrystallized from diethyl ether and filtered. The
solid was washed with ether (1 mL) and placed under vacuum to
give 2g (0.096 g, 0.25 mmol, 80%) as a yellow solid. Crystals
suitable for X-ray analysis were grown from slow evaporation of
a solution of 2g in CDCl3. 1H NMR [(CD3)2SO, 500 MHz] δ 12.22
(s, 1 H, NH), 6.34 (s, 1 H, H4), 5.22 (bs, 1H, OH), 4.19 (d, J )
16.5 Hz, 1 H, CHHS), 4.14 (d, J ) 16.5 Hz, 1 H, CHHS), 3.85
(m, 2 H, SCH2CH2OH), 3.14 (m, 2 H, SCH2CH2OH), 1.29 ppm
[s, 9 H, C(CH3)3]. 13C{1H} NMR [(CD3)2SO, 50.3 MHz] δ 157.4,
155.7, 101.4, 59.3, 41.8, 33.7, 31.5, 29.2 ppm. IR (KBr) 3522
(sharp), 3333 (broad), 3122, 2953, 2874, 1551, 1461, 1399, 1287,
197, 1129, 1056, 995, 809, 714 cm-1. Elemental analysis calcd
(%) for C10H18Cl2N2OPdS (391.65): C, 30.67; H, 4.63; N, 7.15.
Found: C, 30.78; H, 4.63; N, 7.38.
1178, 1159, 1123, 1053, 1026, 1004, 974, 880, 808, 718 cm-1
.
Elemental analysis calcd (%) for C10H18N2S (373.96): C, 31.97;
H, 4.83; N, 7.46. Found: C, 31.87; H, 4.73; N, 7.43.
X-ray Crystallography. The crystal data and details of X-ray
diffraction experiments are given in Tables 1 and 2. The diffraction
data are uniquely consistent with the reported space groups and
yielded chemically reasonable and computationally stable results
of refinement. All structures were solved by direct methods,
completed by subsequent difference Fourier syntheses, and refined
by full-matrix least-squares procedures. All non-hydrogen atoms
were refined with anisotropic displacement coefficients, and
hydrogen atoms, with the exception of the pyrazolyl protons noted,
were treated as idealized contributions. The positions of the
pyrazolyl protons in 2c-g and 5e were determined from the electron
difference map and refined with isotropic displacement coefficients,
whereas in 2h and 5d they were calculated. All software and sources
of the scattering factors are contained in the SHELXTL program
libraries (G. Sheldrick, Siemens XRD, Madison, WI).
Complex 2h. To a solution of thioether ligand 2h (0.0123 g,
0.0543 mmol) in methanol (2 mL) under nitrogen atmosphere was
added at room temperature PdCl2(CH3CN)2 (0.0141 g, 0.0543
mmol). After stirring for 15 h, ether was added, but no precipitate
formed. Hexanes (5 mL) was added to induce crystallization. The
reaction mixture was filtered, and the solid was washed with cold
hexanes (1 mL). The solid residue was placed under vacuum to
give 2h (0.0210 g, 0.0516 mmol, 95%) as a yellow solid. Crystals
suitable for X-ray analysis were grown by slow evaporation of a
Results and Discussion
Synthesis. The number of pyrazole-containing ligands in
which both ring nitrogens are unsubstituted and a side chain
is attached at a ring carbon is rather small,38-40,44,62,65-71
probably because it is relatively difficult to make such
systems. However, we recently reported a method to
1
solution of 2h in CDCl3. H NMR (CDCl3, 500 MHz) δ 10.96 (s,
1 H, NH), 6.19 (s, 1 H, H4), 3.99 (d, J ) 16.5 Hz, 1 H, CHHS),
3.67 (d, J ) 16.5 Hz, 1 H, CHHS), 1.60 [s, 9 H, C(CH3)3], 1.32
ppm [s, 9 H, C(CH3)3]. 13C {1H} (CDCl3, 125.7 MHz) δ 156.9,
155.2, 100.8, 55.1, 32.1, 31.1, 30.4, 29.9 ppm. IR (KBr) 3344, 3120,
3350 Inorganic Chemistry, Vol. 42, No. 10, 2003

Hydrogen Bonding in Pd(II)-Pyrazole Complexes
Table 1. Collection Data for Crystal Structures of 2c, 2d, 2e, and 2ga
2c
2d
2e
2g
formula
C17H17Cl2N2PPd
457.60
0.30 × 0.15 × 0.15
monoclinic
P21/c
11.5347(6)
13.0646(7)
12.1248(6)
90
98.1200(10)
90
C20.5H24Cl3N2PPd
542.14
0.20 × 0.20 × 0.15
monoclinic
C2/c
19.8959(3)
9.7947(2)
23.9010(3)
90
105.2729(2)
90
C9H16Cl2N2PdS
361.60
0.40 × 0.40 × 0.30
orthorhombic
Pbca
12.0199(2)
10.4778(2)
21.4984(2)
90
C10H18Cl2N2OPdS
391.62
0.10 × 0.05 × 0.05
monoclinic
P21/c
11.7418(2)
10.3303(2)
11.8937(2)
90
93.8162(7)
90
MW
cryst dimensions (mm3)
cryst syst
space group
a [Å]
b [Å]
c [Å]
R [deg]
â [deg]
γ [deg]
V [Å3]
Z
90
90
1808.84(16)
4
1.680
4493.19(13)
8
1.603
2707.55(4)
8
1.774
1439.46(2)
4
1.807
D
calcd (g cm-3
)
λ [Å]
0.71073
1.409
173(2)
0.71073
1.263
218(2)
0.71073
1.891
193(2)
0.71073
1.791
218(2)
µ(Mo KR), cm-1
T [K]
2θmax [deg]
measured reflns
indep reflns
28.51
3270
2016 (Rint ) 0.0192)
1858
212
2.66
7.20
1.032
28.15
10410
4585 (Rint ) 0.0312)
4250
257
4.78
17.14
1.478
28.16
11383
3154 (Rint ) 0.0256)
2960
140
3.16
12.39
1.150
26.0
5963
2507 (Rint ) 0.0392)
2190
162
4.93
15.68
1.324
reflns with I > 2σ(I)
no. params
R(F)b (I > 2σ(I)), %
Rw(F2)c (I > 2σ(I)), %
GOF
residual electron density
0.822, -0.423
1.075, -1.650
0.428, -2.705
0.758, -0.658
2
2
a Diffractometer used for all compounds was a Bruker Smart Apex CCD. b R ) ∑||Fo| - |Fc||/∑|Fo|. c Rw(F2) ) {∑[w(Fo2 - Fc )2]/∑[w(Fo )2]}1/2; w )
1/[σ2(Fo ) + (aP)2+bP], P ) [2Fc + max(Fo, 0)]/3.
2
2
Table 2. Collection Data for Crystal Structures of 2h, 5d, 5ea
Scheme 2
2h
5d
5e
formula
MW
C
12H22Cl2N2PdS
C21H25Cl2N2PPd
513.70
C10H18Cl2N2PdS
375.62
403.68
cryst dimensions 0.25 × 0.25 × 0.10 0.50 × 0.20 × 0.20 0.30 × 0.20 × 0.20
(mm3)
cryst syst
space group
a [Å]
b [Å]
c [Å]
monoclinic
P21/c
12.1700(9)
22.2275(17)
12.7895(10)
90
90.055(1)
90
3459.7(5)
8
monoclinic
P21/c
21.6515(14)
9.7465(6)
23.3093(15)
90
117.238(1)
90
4373.4(5)
8
monoclinic
P21/c
10.6217(19)
10.7784(19)
12.812(2)
90
107.328(3)
90
1400.2(4)
4
R [deg]
â [deg]
γ [deg]
V [Å3]
Z
D
calcd (g cm-3
λ [Å]
)
1.550
0.71073
1.560
0.71073
1.175
1.782
0.71073
1.832
µ(Mo KR), cm-1 1.489
T [K]
2θmax [deg]
153(2)
28.29
153(2)
28.28
173(2)
28.30
measured reflns 40029
49800
6810
indep reflns
8305
(Rint ) 0.0412)
10495
(Rint ) 0.0424)
3069
(Rint ) 0.0336)
reflns with
I > 2σ(I)
7328
8613
2461
no. params
326
3.45
487
4.17
149
3.09
R(F)b (I >
2σ(I)), %
Rw(F2)c (I >
2σ(I)), %
8.03
8.38
7.24
GOF
1.165
1.095
1.046
residual electron 0.648, -1.034
density
0.696, -0.580
0.585, -0.696
a Diffractometer used for all compounds was a Bruker Smart Apex CCD.
2
2
2
b R ) ∑||Fo| - |Fc||/∑|Fo|. c Rw(F2) ) {∑[w(Fo - Fc )2]/∑[w(Fo )2]}1/2
;
w ) 1/[σ2(Fo ) + (aP)2+bP], P ) [2Fc + max(Fo, 0)]/3.
2
2
71% yield, a variety of thioether and phosphine ligands 1
and 4 were readily available using the chemistry shown.
For the purposes of this paper, thioether and phosphine
ligands 1 and 4 were used in facile ligand exchange on
dichloropalladiumbis(acetonitrile), leading to a total of eight
new complexes of type 2 and 5 (Scheme 2). The complexes
construct precursors 3 (Scheme 2) in which substituent R
can be methyl, i-propyl, phenyl, tert-butyl, or adamantyl and
the side-chain length can be varied.63 Because over 30 g of
3 could be made in four steps in a matter of 2 days in overall
Inorganic Chemistry, Vol. 42, No. 10, 2003 3351

Grotjahn et al.
Table 3. Main Bond Lengths (Å) and Angles θ (deg) in 2 and 5
Pd-Cl
trans to L
Pd-Cl
trans to N
n
L
R
Pd-L
Pd-N
θ1
θ2
θ3
θ4
2c
2d
2e
1
1
1
1
1
Ph2P
Ph2P
MeS
Me
2.4719(8)
2.2215(11)
2.2944(12)
2.3108(7)
2.7773(18)
2.295(1),
2.298(1)
2.2831(8),
2.2764(8)
2.274(1)
2.2847(9)
2.2440(11)
2.2792(7)
2.2487(15)
2.276(1),
2.275(1)
2.2411(8),
2.2330(8)
2.2674(9)
1.953(3)
2.014(4)
2.003(2)
1.9928(53)
1.981(3),
1.972(3)
2.056(3),
2.056(3)
2.010(3)
83.23(8)
82.2(1)
83.64(7)
84.72(15)
83.6(1),
83.4(1)
91.11(7),
91.27(7)
93.22(8)
92.84(8)
89.9(1)
90.89(7)
93.59(15)
88.5(1),
89.0(1)
90.14(7),
90.13(7)
89.88(8)
95.06(4)
94.7(4)
95.30(3)
93.94(7)
95.36(4),
95.04(4)
90.23(3),
90.16(3)
91.54(3)
89.04(4)
93.2(4)
90.08(3)
87.75(7)
92.52(4),
92.59(4)
88.54(3),
87.93(3)
85.36(3)
t-Bu 2.3842(11)
t-Bu 2.3477(7)
2g
HOCH2CH2S t-Bu 2.3124(17)
2ha
t-BuS
Ph2P
MeS
t-Bu 2.334(1),
2.333(1)
t-Bu 2.3891(8),
2.4005(8)
5da
5e
2
2
t-Bu 2.3293(9)
a Two independent molecules in unit cell.
all are air-stable solids and appear to form in high yields,
which in some cases (e.g., 2c) were lowered after crystal-
lization. The tert-butyl derivatives in particular displayed
good solubility in relatively nonpolar organic solvents such
as dichloromethane or chloroform.
The 1H and 13C NMR data for 2 and 5 showed sharp peaks
in the expected ranges, in informative contrast to the situation
encountered for the ligands. Carbon NMR data for both the
ligands and complexes showed three signals for the pyrazole
ring carbons in similar ranges, the one for C4 in the range
100-105 ppm and the two for C3 and C5 downfield,
between 145 and 158 ppm. However, as noted before,63 13
C
NMR spectra of 1 and 4 provided evidence of tautomeriza-
tion, in that the two downfield resonances for C3 and C5,
those carbons closest to the shifting proton, were unusually
broadened.72 (Only one tautomer is shown in the schemes
and chart for clarity.) In contrast, with the metal coordinated
to the nitrogen shown in 2 and 5, 13C NMR resonances for
all pyrazole ring carbons are sharp, and moreover, the N-H
proton resonance also is sharper than in proton NMR spectra
of the free ligands. We ascribe these changes to the existence
of a single tautomer in the complexes, a result supported by
X-ray diffraction studies in the solid state.
Figure 1. Molecular structure of 2c. Thermal ellipsoids are at 30%
probability.
X-ray Crystal Structures. Seven samples were analyzed
at temperatures between 153 and 218 K. Collection data are
summarized in Tables 1 and 2, and key bond lengths and
angles are shown in Table 3. In the cases of 2h and 5d, two
Figure 2. Molecular structure of 2d. Thermal ellipsoids are at 30%
probability.
(65) Schenck, T. G.; Downes, J. M.; Milne, C. R. C.; Mackenzie, P. B.;
Boucher, H.; Whelan, J.; Bosnich, B. Inorg. Chem. 1985, 24, 2334-
2337.
independent molecules were seen in the unit cell, so for these
complexes Table 3 shows two sets of values. First, general
trends in the metrical parameters will be discussed, followed
by examples of the changes in hydrogen bonding as a
function of ligand. (Figures 1-6 show the molecular structure
of representative complexes. For the other species listed in
Tables 1-3, see Supporting Information.)
Representative structures are those of 2c and 2d, shown
in Figures 1 and 2. All complexes feature slightly distorted
square-planar geometries. In all cases, the sum of the four
angles θ1-θ4 is equal to 360.0°, within experimental
(66) Juanes, O.; de Mendoza, J.; Rodriguez-Ubis, J. J. Chem. Soc., Chem.
Commun. 1985, 1765-1766.
(67) Di Vaira, M.; Mani, F.; Stoppioni, P. J. Chem. Soc., Dalton Trans.
1994, 3739-3743.
(68) Singh, K.; Long, J. R.; Stavropoulos, P. Inorg. Chem. 1998, 37, 1073-
1079.
(69) Zadycowicz, J.; Potvin, P. G. J. Org. Chem. 1998, 63, 235-240.
(70) Satake, A.; Nakata, T. J. Am. Chem. Soc. 1998, 120, 10391-10396.
(71) Ward, M. D.; Fleming, J. S.; Psillakis, E.; Jeffery, J. C.; McCleverty,
J. A. Acta Crystallogr., Sect. C 1998, C54, 609-612.
(72) Begtrup, M.; Boyer, G.; Cabildo, P.; Cativiela, C.; Claramunt, R. M.;
Elguero, J.; Garcia, J. I.; Toiron, C.; Vedsø, P. Magn. Res. Chem.
1993, 31, 107-168.
3352 Inorganic Chemistry, Vol. 42, No. 10, 2003

Hydrogen Bonding in Pd(II)-Pyrazole Complexes
Figure 6. Molecular structure of 2e. Thermal ellipsoids are at 30%
probability.
Figure 3. Molecular structure of 2e. Thermal ellipsoids are at 30%
probability.
Table 4. Hydrogen Bonding Contacts in 2 and 5 (Å, deg)
intermolecular
intramolecular
closest other
N(2)-H H‚‚‚Cl(1) N(2)‚‚‚Cl(1) N(2)-H‚‚‚Cl(1) N(2)-H‚‚‚Cl
distance
distance
distance
angle
contact
2c 0.84(4)
2d 0.90(5)
2e 0.87(4)
2g 0.96(7)
2.71(4)
2.58(5)
2.67(4)
2.69(7)
3.227(4)
3.152(4)
3.187(3)
3.293(6)
121(3)
122(3)
119(3)
121(5)
115, 115
127, 128
125(3)
2.49
3.75
3.98
4.54
3.77, 3.87
5.01, 5.02
3.78
2ha 0.88, 0.88 2.59, 2.60 3.071, 3.077
5da 0.88, 0.88 2.37, 2.35 2.975, 2.972
5e 0.77(3)
2.53(4)
3.040(3)
a Two independent molecules in unit cell. Positions of pyrazolyl
hydrogens not refined.
In four complexes of type 2 where the side chain contains
one methylene group, consistent distortions from ideal
interligand bond angles of 90° are seen: L-Pd-N and
opposing Cl-Pd-Cl angles are smaller [82.2(1)-84.72(2)°]
and larger [93.94(7)-95.36(4)°], respectively, than the ideal
values. This difference is reversed in the complexes 5
featuring the longer side chain, where L-Pd-N angles are
0.5-1.7° larger than the opposing Cl-Pd-Cl angles.
Figure 4. Molecular structure of 2h. Thermal ellipsoids are at 30%
probability.
Hydrogen Bonding. In all complexes examined, the N-H
of the coordinated pyrazole appears to participate in a
hydrogen bond with the chloride ligand cis to pyrazole.
Distances between the hydrogen and the chlorine are in the
range 2.35(4)-2.71(4) Å, and angles N(2)-H(2)-Cl(1) are
in the range 121-128° (see Table 4 for intra- and inter-
molecular contacts). Although these angles are rather small,
whereas optimal angles for hydrogen bonding are closer to
180°,73,74 the importance of the hydrogen bonding is sug-
gested by observing the dihedral angle between two planes,
that of the pyrazole ring (which includes the N-H) and the
square plane defined by Pd and the four ligating atoms. For
the complexes with a single methylene group in the side
chain, these angles are close to 0° (e.g., for 2c, it is 2.4°),
but this could be because of the rigidity of the five-membered
chelate. A better test would be complexes 5d and 5e (Figures
5 and 6), which have longer side chains and appear to be
more folded. Significantly, here we note that the dihedral
angle just defined is still very small (3.8° and 6.8° for the
Figure 5. Molecular structure of 2d. Thermal ellipsoids are at 30%
probability.
uncertainty. Palladium-ligand bond lengths are quite con-
stant, even as the size (and steric bulk) of the ligand changes
from that of CH3-S- [2e, Pd-S ) 2.279(1) Å, Figure 3]
to t-Bu-S- [2h, Pd-S ) 2.276(1) or 2.275(1) Å, Figure 4].
The greater ground-state trans effect (trans influence) of the
phosphine ligand compared with the pyrazole N is shown
by the greater lengths of the Pd-Cl bond trans to P compared
to those trans to N (differences of 0.090, 0.106 and 0.125,
0.250 Å for 2d, 5d, and 2c, respectively). In the thioether
complexes, the Pd-Cl bond trans to S is longer than the
one trans to pyrazole N, but the differences are less (in the
range 0.037-0.055 Å). Similar differences were seen in
previous comparisons of phosphine and thioether complexes.2
(73) Pimentel, G. C.; McClellan, A. L. The Hydrogen Bond; W. H.
Freeman: San Francisco, 1960.
(74) Jeffery, G. A. An Introduction to Hydrogen Bonding; Oxford: New
York, 1997.
Inorganic Chemistry, Vol. 42, No. 10, 2003 3353

Grotjahn et al.
Figure 7. Unit cell packing diagram of 2c. Thermal ellipsoids are at 25%
probability.
Figure 9. Unit cell packing diagram of 2e. Thermal ellipsoids are at 25%
probability.
Figure 8. Unit cell packing diagram of 2d. Thermal ellipsoids are at 25%
probability.
two independent molecules of 5d and 25.6° for 5e), showing
that the N-H vector is close to the square plane of the
complex, maximizing intramolecular hydrogen bonding.
Figure 10. Unit cell packing diagram of 2g. Thermal ellipsoids are at
25% probability.
The major difference between the complexes studied is
the number and distances of intermolecular hydrogen bonding
interactions. In our previous work on 1, in fact, the
intermolecular distance between one N-H and a chloride
was less than the intramolecular one.2 In this work, the
structure of methyl-substituted (diphenylphosphinomethyl)-
pyrazole complex 2c (Figure 1) shows a pairing of molecular
units in the unit cell, although the intermolecular distance
between Cl(1) and pyrazole N-H(2A) [2.71(4) Å] is
somewhat greater than the intramolecular distance Cl(1)-
H(2) [2.49(3) Å]. The unit cell packing diagram is shown in
Figure 7. In contrast, in tert-butyl substituted analogue 2d
(Figure 8), intermolecular contacts between the pyrazole
N-H and chloride ligands are absent, the closest such
distance being 3.75 Å (see rightmost column of Table 4).
The diphenylphosphino group in 2d is large, but the closest
intermolecular N(2)-H‚‚‚Cl contact of 3.98 Å and the
packing diagram of even thioether complex 2e (Figure 9)
show the ability of the pyrazole tert-butyl group to block
intermolecular hydrogen bonding. In 2e, the small CH3S-
group allows for intermolecular Pd-S contacts of 3.643(1)
Å, distinct from hydrogen bonding. Significantly, the packing
diagrams of other tert-butyl-substituted derivatives (2h, 5d,
5e, see Supporting Information) also show the ability of the
large pyrazole substituent to block N(2)-H‚‚‚Cl closest
intermolecular contacts, which range from 3.75 to 5.02 Å
(Table 4).
The packing diagram of (2-hydroxyethyl)thioether com-
plex 2g (Figure 10) is exceptional in the series. Figure 10
shows the ability of the coordinated pyrazole N-H and
chloride ligands to enter into hydrogen bonding with the
O-H of a neighboring molecule in the crystal. This
interaction may model that between water or hydroxylic
solvents and the bifunctional pyrazole-chloride complex.
The intermolecular contact between the pyrazole H of one
molecule and oxygen of another is less [2.33(3) Å] than the
intramolecular N-H‚‚‚Cl contact [2.69(3) Å]. Meanwhile,
the hydroxyl H of one molecule is only 2.75 Å distant from
the chloride ligand of a neighbor. The intermolecular
interactions may play a role in bifunctional activation of
substrates.
Solution Studies of Hydrogen Bonding and Acidity.
Although solid-phase structural data show evidence of
hydrogen bonding, we wished to obtain more evidence for
these effects, particularly in solution. In addition, because
as far as we are aware, only two papers in the literature give
3354 Inorganic Chemistry, Vol. 42, No. 10, 2003

Hydrogen Bonding in Pd(II)-Pyrazole Complexes
acidity data for pyrazole complexes,59,60 we have used our
new complexes to examine solution-phase acidity.
18.4677) was added. When 2 equiv of N-methylimidazole
(whose basicity in acetonitrile is unknown) was employed,
no precipitate was seen, yet the NMR spectrum of the
solution had changed to show the appearance of some of
the corresponding free pyrazole ligand. Analysis of the
various precipitates and the supernatant solutions by direct-
injection electrospray mass spectrometry showed only the
presence of Pd-containing species containing two Pd atoms
and pyrazole ligands and one to three chlorides, suggesting
that deprotonation leads to dimeric structures related to E
(cf. ref 62), whose precise structures must remain the subject
of future reports. Regardless, from mass spectrometry data
it appears that determination of the acidities of coordinated
pyrazoles is made more difficult by the ability of the
pyrazolate ligand to form bridging species, a difficulty well-
documented in the case of the metal aquo ion of Pd(II).78
In summary, we find that, in acetonitrile, pyrazole ligands
in Pd(II) complexes exhibit pKa values between 12.4 and
18.5, probably closer to the former value. Because the pKa
values of a variety of amines are from 6 to 8 units higher in
acetonitrile than in water,77 we estimate further that should
pyrazole-Pd(II) complexes be dissolved in neutral aqueous
solutions, they could show pKa values near 7, considerably
lower than the pKa of free pyrazole (14.2).61
In order to identify unambiguously the N-H stretching
frequency in the complexes, an isotopic substitution study
was done on 2e: first, the complex was stirred with CD3-
OD, and the resulting mixture was evaporated. This process
was repeated twice more to produce 2e-d. Dissolution of 2e-d
thus obtained in CH2Cl2 (5 mg/mL) gave a solution whose
IR spectrum showed a strong absorption at 2498 cm-1 and
a weaker one at 3342 cm-1.75 No other differences between
the spectra of 2e and its deuterated analogue were noted,
and only the absorption at 3342 cm-1 was exhibited by 2e
itself. Considering the reduced masses of the N-H and N-D
bonds, for νNH/νND a ratio of 1.369 is predicted, compared
with the ratio of 1.337 observed. In conclusion, we assign
the absorption at 3342 cm-1 to the pyrazole N-H stretching
frequency. A similar solution of related phosphine complex
2d, which was also soluble in CH2Cl2, showed νNH ) 3312
cm-1.76
Of particular interest would be comparison of hydrogen
bonding behavior of 2b and tert-butyl-substituted analogues
such as 2e and 5e. Unfortunately, 2b was totally insoluble
in CH2Cl2, but in the more polar CH3CN, it was soluble only
to the extent of about 1 mg/mL (ca. 0.002 M). Under these
conditions, a somewhat broad peak ascribed to the N-H was
seen centered at about 3325 cm-1. Better signal-to-noise was
achieved in spectra of 2e in CH3CN, which showed a peak
at 3339 cm-1. It would have been of interest to examine the
IR spectra of 2b as a function of concentration, but its
extremely poor solubility characteristics precluded such a
study. Our tentative conclusion is that the very similar IR
characteristics of 2b and 2e in CH3CN solution suggest that
both species are monomeric, at least at concentrations near
0.002 M.
Conclusions
The ability of pyrazole to donate a hydrogen bond has
been explored using a series of new ligands featuring two
ring substituents. The substituent at C3 with a short side chain
and a ligating thioether or phosphine group L (-CH2L or
-CH2CH2L) is designed to anchor a metal firmly to the
pyrazole, by forming a chelate between L and the ring
nitrogen closest to the side chain. Several Pd(II) complexes
of this type were made and characterized by X-ray diffrac-
tion, to show the nature of hydrogen bonding between
pyrazole N-H and chloride ligands. The second substituent
at C5 can be methyl, i-propyl, tert-butyl, 1-adamantyl, or
phenyl, and the identity of this group clearly influences the
accessibility of the pyrazole NH for hydrogen bonding.
Attempts to corroborate these results using IR spectroscopy
were thwarted by great differences in solubility behavior,
but solution studies using three organic bases in acetonitrile
suggested the degree of acidification of the coordinated
pyrazole. Future papers will explore these effects and the
acidity and basicity of pyrazole and pyrazolate ligands in a
variety of contexts.
The acidity of complexes 2e and 5e was studied by a
combination of NMR, IR, and mass spectroscopies in CD3-
CN because it was felt that such a polar solvent gave the
best chance of keeping even ionic species in solution, while
maintaining the ability to dissolve the neutral starting
materials. Neither complex 2e nor 5e reacted to a detectable
extent (<5%) with equimolar amounts of pyridine or 2,6-
lutidine, putting an upper limit on their acidity, because the
pKa of pyridinium ion in CH3CN is reported to be 12.33.77
However, after addition of 100 equiv of pyridine, precipita-
tion occurred. A similar precipitation occurred when only 1
equiv of the stronger base triethylamine (pKa in CH3CN )
Acknowledgment. San Diego State University is thanked
for their support of the preparative work. NSF funded the
electrospray mass spectrometer (CHE-0116758) and the 500
MHz NMR spectrometer (CHE-9413802) used at SDSU.
(75) We presume that traces of undeuterated material remaining came from
partial substitution or exchange with traces of water in the IR cell.
(76) A comparison of this value with those found for the free ligands,63
which all have one relatively small -CH2L substituent at position 3
on the ring, probably cannot shed light on the question of hydrogen
bonding in the complexes, because of the known ability of even 3,5-
dimethylpyrazole to form oligomers through hydrogen bond net-
works: Smith, J. A. S.; Wehrle, B.; Aguilar-Parrilla, F.; Limbach, H.
H.; Foces-Foces, M. de la C.; Cano, F. H.; Elguero, J.; Baldy, A.;
Pierrot, M.; Khurshid, M. M. T.; Lacombe-Douall, J. B. J. Am. Chem.
Soc. 1989, 111, 7304-7312.
Supporting Information Available: Figures showing molecular
structure of 2g and unit cell packing diagrams of 2h, 5d, and 5e,
and the CIF file for all seven structures reported in this paper. This
material is available free of charge via the Internet at http://
pubs.acs.org.
(77) Coetzee, J. F.; Padmanabhan, G. R. J. Am. Chem. Soc. 1965, 87, 5005-
5010.
(78) Shi, T.; Elding, L. I. Acta Chem. Scand. 1998, 52, 897-902.
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