K. Gholivand et al. / Journal of Molecular Structure 750 (2005) 64–71
65
2. Experimental
2JHHZ12.72, 4H); 2.74–2.80 (multi. 4H); 3.64–3.68 (multi.
4H); 7.44–7.94 (multi, 5H, aromatic); 7.90 (s, 1H, NH); 13
C
2.1. Material and method
NMR (CDCl3), d (ppm): 32.01 (s, 2C); 32.03 (s, 2C(CH3));
35.42 (d, 2C 2JP–CZ4.94); 35.65 (d, 2C 2JP–CZ5.08); 45.80
2
All reactive and solvents were purchased from Merck.
1H, 13C and 31P NMR spectra were recorded on a Bruker
(Advance DRS) 500 MHz spectrometer. H, 13C and 31P
(d, 2C JP–CZ2.89); 46.65 (s); 128.78 (s); 129.66 (s,);
3
133.448 (s); 134.41 (d. JP–CZ8.55 Hz); 168.63 (s, CO);
31P {1H} NMR, d (ppm): 12.13 (s); 31P NMR, d (ppm):
11.81–12.27 (multi.) IR (KBr), n (cmK1): 725 (s); 837 (m);
955 (vs); 1059 (vs); 1105 (m); 1154 (s), 1190 (vs)(P(O));
1256 (m); 1445 (vs); 1668 (vs)(C(O)); 3060 (m) (NH).
1
chemical shifts were obtained in CDCl3 relative to TMS and
85% H3PO4 as external standards, respectively. IR spectra
were obtained using KBr pellets on a Shimadzu IR-60
model spectrometer. Elemental analyses were performed
using a Heraeus CHN–O– RAPID and melting point was
measured on Mettler FP 61 instrument.
2.3. Computational details
The conformational space of the molecules under study
was scanned using the molecular dynamics module of the
HyperChem package [11]. The MMC molecular mechanics
force field available in that package was used for the
simulations. The starting geometries were heated from 0 to
1000 K in 0.1 ps. Then the temperature was kept constant by
coupling the system to asimulated bath with a relaxation time
of 0.5 ps. After an equilibration period of about 5 ps, a 500 ps
long simulation was carried out saving the molecular
coordinates every 5 ps. The simulation time step was 0.5 fs.
The saved geometries were then minimized to an energy
2.2. Chemical syntheses
2.2.1. Synthesis of N-benzoylphosphoramidic dichloride
(compound A)
This compound was synthesized according to the
reported method of the literature. [10]
2.2.2. Synthesis of N-benzoyl-N0, N00-bis(piperidine)
phosphoric triamide (1)
This compound was synthesized from the reaction of
0.238 g, (1 mmol) compound A dissolved in 30 ml dry
acetonitrile with 0.34 g, (4 mmol) of piperidine. The amine
was added dropwise to a solution of compound A with
continuous stirring of the same and was cooled to K4 8C.
After a reaction time of 12 h, a white powder was obtained.
The solvent was evaporated in vacuum and the residue
washed with distilled water and dried at room temperature
(Yield: 90–98% with 98% purity). This compound was
recrystallized from concentrated solution of acetone at 4 8C.
Anal. Calc. for C17H26N3PO2: C, 60.89; H, 7.76; N,
˚
gradient smaller than 0.1 kcal/mol A, using the MMC
molecular mechanics force field. Another simulation at
1500 K was also performed to scan the potential energy
surface of the molecules as well as possible. The remaining
parameters of the simulation were kept similar to those of the
1000 K simulation.
The lowest-energy conformers found after the above
simulations were subject to further geometry optimizations
using the density functional theory [12]. With such a purpose,
the B3LYP hybrid exchange-correlation functional [13],
together with the 6-31CCG(d,p) basis set as implemented in
the GAUSSIAN 03 package [14], was used. All geometric
parameters were optimized without constraints.
1
12.53 found: C, 60.92; H, 7.80; N, 12.42.m.p, 198 8C. H
NMR (CDCl3), d (ppm): 1.56(multi, 12H); 3.18–3.23
(multi, 8H); 7.43–7.94 (multi, 5H, aromatic); 7.89 (s, 1H,
NH); 13C NMR (CDCl3), d (ppm): 25.52(s, 2C); 27.19((d,
The harmonic vibrational frequencies were then obtained
for the optimized geometries of the molecules under study in
thepresent work. Thefrequencieswerecalculated atthesame
level of theory as above. The importance of the vibrational
analyses is twofold. First, it enables the characterization of
3
2
4C), JP–CZ4.7 Hz); 46.81((d, 4C), JP–CZ2.7 Hz);
3
128.78(s); 129.65(s); 133.43 (d, JP–CZ8.5 Hz); 168.62(d,
CO, 2JP–CZ3.9 Hz); 31P {1H} NMR, d (ppm): 12.02 (s); 31
P
NMR, d (ppm): 11.75–12.2(multi.) IR(KBr), n (cmK1):
720(s); 836(m); 952 (vs); 1065(vs); 1106(m); 1156(s),
1203(vs)(P(O)); 1263(m); 1444(vs); 1667(s)(C(O));
3060(m)(NH).
N
O
O
Cl
Cl
N
P
P
N
N
2.2.3. Synthesis of N-benzoyl-N0,N00-bis(4-methylpiperidine)
phosphoric triamide (2)
O
O
H
H
+ Piperidin
Compound A
Compound (1)
This compound was synthesized in a similar way as (1),
using 4-methylpiperidine instead of piperidine. (Yield: 95–
98% with 98% purity). A crystalline solid was obtained
from a concentrated methanol/chloroform solution at 23 8C.
Anal. Calc. for C19H30N3PO2: C, 62.83; H, 8.26; N, 8.80
Me
Me
+ 4 -methylpiperidin
N
P
O
N
N
O
H
1
found: C, 62.90; H, 8.31; N, 8.69.m.p 215 8C. H NMR
(CDCl3), d (ppm): 0.91 (d, 6H, CH3, JHHZ6.22 Hz);
1.11–1.20 (multi. 4H); 1.45–1.50 (multi. 2H); 1.59 (d,
Compound (2)
Scheme 1. preparation of compounds (1) and (2).