Page 9 of 15
The Journal of Organic Chemistry
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diluted with sat NaHCO3 (30 mL), EtOAc (30 mL) and the phases were separated. The aqueous phase was
further extracted with EtOAc (3×30 mL), washed with water (3×30 mL), dried (MgSO4) and concentrated in
vacuo to give ethyl 3-amino-oct-2-enoate S4 (856 mg, 88%) as a mixture of inseparable geometric isomers
(A:B; 10:90).51 1H n.m.r. (300 MHz, CDCl3): δ 4.54 (s, 1H, H2), 4.20 (q, J = 7.1 Hz, 2H, H1’ isomer A), 4.11 (q, J
= 7.1 Hz, 2H, H1’ isomer B), 2.53 (t, J = 7.4 Hz, 2H, H4 isomer A), 2.11 (t, J = 7.5 Hz, 2H, H4 isomer B), 1.63 –
1.47 (m, 4H, H5 & H6), 1.40 – 1.20 (m, 5H, H7 & H2’), 0.92 – 0.85 (m, 3H, H8). 13C n.m.r. (100 MHz, CDCl3): δ
170.6 (C1), 164.0 (C3), 83.6 (C2), 58.7 (C1’), 36.6 (C4), 31.4 (C5), 27.7 (C6), 22.5 (C7’), 14.7 (C2’), 14.1 (C8).
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(Z)-Ethyl 3-benzamidooct-2-enoate 6 (R=Et). Benzoyl chloride (617 μL, 5.31 mmol) in CH2Cl2 (2 mL) was
added dropwise over 10 mins to a stirred solution of ethyl 3-amino-oct-2-enoate S4 (820 mg, 4.43 mmol)
and pyridine (430 μL, 5.31 mmol) in CH2Cl2 (15 mL) under an atmosphere of nitrogen at 0 °C. The resulting
solution was warmed to room temperature. After 16 hours the reaction mixture was quenched with sat.
NaHCO3 (15 mL), diluted with CH2Cl2 (30 mL) and the phases were separated. The aqueous phase was
further extracted with CH2Cl2 (3×30 mL), washed 1M HCl (3×30 mL), sat. NaHCO3 (3×30 mL), water (3×50
mL), dried (MgSO4) and concentrated in vacuo to give crude ethyl 3-benzamidooct-2-enoate 6 (R=Et) as a
mixture of geometric isomers. The crude product was purified by via flash chromatography (SiO2; 1:8;
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EtOAc:hexane) to give (Z)-methyl 3-benzamidooct-2-enoate 6 (R=Et) (1.0 g, 78%) as a light yellow oil. H
n.m.r. (200 MHz, CDCl3): δ 12.09 (s, 1H, NH), 7.98 (dt, J = 13.9 Hz, J = 6.7 Hz, 2H, H2’), 7.76 – 7.36 (m, 4H, H3’
& H4’), 5.08 (s, 1H, H2), 4.21 (q, J = 7.1 Hz, 2H, H1”), 2.98 – 2.78 (m, 2H, H4), 1.62 (m, 2H, H5), 1.52 – 1.13
(m, 7H, H6, H7 & H2”), 0.96 – 0.84 (m, 3H, H8). 13C n.m.r. (75 MHz, CDCl3): δ 169.9 (CONH), 165.0 (C1), 159.8
(C3), 134.4, 132.4, 129.0, 127.8, 96.9 (C2), 60.2 (C1”), 34.5, 31.7, 28.3, 22.6, 14.6 (C2”), 14.1 (C8). LRMS (ESI-
TOF) m/z: [M + H]+ Calcd for [C17H24NO3]+ 290.2; Found 290.1.
(R,S)-Methyl 3-benzamidooctanoate ±11 (R=Me). A Fischer-Porter tube was charged with (Z)-methyl 3-
benzamidooct-2-enoate 6 (R=Me) (535 mg, 1.93 mmol), palladium on carbon 10% w/w (54 mg) and
methanol (15 mL). The headspace of the vessel was purged with argon over three cycles, charged with
hydrogen (75 psi) and stirred at room temperature for 18 hours. The hydrogen was then vented from the
vessel and the reaction mixture was filtered through a short plug of diatomaceous earth and concentrated
in vacuo. The crude product was purified by via crystallisation (1:10; CH2Cl2:hexane) to give (R/S)-methyl 3-
benzamido octanoate 11 (R=Me) (390 mg, 73%) as an off white semi-solid. 1H n.m.r. (400 MHz, CDCl3): δ
7.82 – 7.73 (m , 2H, H2’), 7.54 – 7.37 (m, 4H, H3’ & H4’), 6.88 (bd, J = 8.7 Hz, NH), 4.54 – 4.32 (m, 1H, H3),
3.71 (s, 3H, OMe), 2.66 (qd, J = 16.0 Hz, 4.9 Hz, 2H, H2), 1.74 – 1.48 (m, 2H, H4), 1.48 – 1.17 (m, 6H, H5-H7),
0.87 (t, J = 7.0 Hz, 3H, H8). 13C n.m.r. (100 MHz, CDCl3): δ 172.9 (CONH), 166.9 (C1), 134.8, 131.5, 128.7,
127.1 (C1’-C4’), 51.9 (OMe), 46.5 (C3), 38.2 (C2), 34.3 (C4), 31.7 (C5), 26.1 (C6), 22.6 (C7), 14.11 (C8). LRMS
(ESI-TOF) m/z: [M + H]+ Calcd for [C16H24NO3]+ 278.2; Found 278.1. νmax (neat): 3306m, 2957m, 2924m,
2855m, 1737s, 1636s, 1535s cm-1. HPLC (DIACEL CHIRACEL OD 0.46 x 250mm C-048, isocratic elution (98:2;
hexane:isopropanol), 1 mL/min: tR=17.7 min (50% area, (S)-isomer) tR=21.2 min (50% area, (R)-isomer).
(R,S)-Ethyl 3-benzamidooctanoate ±11 (R=Et). A Fischer-Porter tube was charged with (Z)-ethyl 3-
benzamidooct-2-enoate 6 (R=Et) (66 mg, 0.23 mmol), palladium on carbon 10% w/w (6.5 mg) and methanol
(5 mL). The headspace of the vessel was purged with argon over three cycles, charged with hydrogen (75
psi) and stirred at room temperature for 18 hours. The hydrogen was then vented from the vessel and the
reaction mixture was filtered through a short plug of diatomaceous earth and concentrated in vacuo. The
crude product was purified by via flash chromatography (SiO2; 1:3; EtOAc:hexane) to give (R/S)-ethyl 3-
benzamido octanoate 11 (R=Et) (48 mg, 73%) as a light yellow oil. 1H n.m.r. (400 MHz, CDCl3): δ 7.82 – 7.74
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