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J Mol Model (2016) 22: 144
interaction with the nonpolar Phe120 residue in the protein
binding domain. Clearly, the hydrophobic interactions were
dominant in the binding between the EBF analogues and
OBP7 because its binding domain is a long, narrow hydro-
phobic tunnel. In addition, electronic effects were also pro-
posed to strengthen the binding between the EBF conjugated
double bond or aromatic ring and nearby OBP7 residues.
References
1. Harris KF, Maramorosch K (1977) Aphids as virus vectors.
Academic, New York, 4:435–454
2. Bowers WS, Nault LR, Webb RE, Dutky SR (1972) Aphid alarm
pheromone: isolation, identification, synthesis. Science 177:1121–1122
3. Dawson GW, Giffiths DC, Pickett JA, Plumb RT, Woodcock CM,
Zhang ZN (1988) Structure–activity studies on aphid alarm phero-
mone derivatives and their field use against transmission of barley
yellow dwarf virus. Pestic Sci 22:17–30
4. Li ZM, Wang TS, Yao EY (1987) Researches on insect pheromone
III studies on aphid alarm pheromone mimics. Acta Chem Sin 45:
1124–1128
Conclusions
5. Zhang ZN, Liu X, Pickett JA (1988) Several aphids alarm phero-
mone analogues possessing biological activity. Acta Entomol Sin
31:435–438
6. Sun L, Ling Y, Wang C, Sun YF, Rui CH, Yang XL (2011)
Synthesis and biological activity of E-β-farnesene analogues con-
taining substituent nitroguanidine. Chin J Org Chem 31:2061–2066
7. Kang TN, Ling Y, Rui CH, Yang XL, Fan XL, Chen FH (2008)
Synthesis of E-β-farnesene analogues containing five-membered
azaheterocycles and their biological activity. Chin J Org Chem
28:617–621
8. Sun YF, Li YQ, Ling Y, Yu HL, Yang SX, Yang XL (2011) Design,
synthesis and biological activity of E-β-farnesene analogues con-
taining pyrazole-carboxamide. Chin J Org Chem 31:1425–1432
9. Sun L (2013) Synthesis process and structure optimization of EBF
analogue CAU1204. PhD dissertation. China Agricultural
University, Beijing
10. Liu SH (2014) Design, synthesis and bioactivity of neonicotinoids
and EBF analogues. PhD dissertation. China Agricultural
University, Beijing
11. Pelosi P, Zhou JJ, Ban LP, Calvello M (2006) Soluble proteins in
insect chemical communication. Cell Mol Life Sci 63:1658–1676
12. Tegoni M, Campanacci V, Cambillau C (2004) Structural aspects of
sexual attraction and chemical communication in insects. Trends
Biochem Sci 29:257–264
13. Qiao HL, Tuccori E, He XL, Gazzano A, Field L, Zhou JJ, Pelosi P
(2009) Discrimination of alarm pheromone (E)-β-farnesene by
aphid odorant-binding proteins. Insect Biochem Mol 39:414–419
14. Zhong T, Yin J, Deng SS, Li KB, Cao YZ (2012) Fluorescence
competition assay for the assessment of green leaf volatiles and trans-
β-farnesene bound to three odorant-binding proteins in the wheat
aphid Sitobion avenae (Fabricius). J Insect Physiol 58:771–781
15. Sun YF, Qiao HL, Ling Y, Yang SX, Rui CH, Pelosi P, Yang XL
(2011) New analogues of (E)-β-farnesene with insecticidal activity
and binding affinity to aphid odorant-binding proteins. J Agric
Food Chem 59:2456–2461
16. Tsitsanou KE, Thireou T, Drakou CE, Koussis K, Keramioti MV,
Leonidas DD, Eliopoulos E, Iatrou K, Zographos SE (2012)
Anopheles gambiae odorant binding protein crystal complex with
the synthetic repellent DEET: implications for structure-based de-
sign of novel mosquito repellents. Cell Mol Life Sci 69:283–297
17. Mao Y, Xu XZ, Xu W, Ishida Y, Leal WS, Ames JB, Clardy J
(2010) Crystal and solution structures of an odorant-binding protein
from the southern house mosquito complexed with an oviposition
pheromone. Proc Natl Acad Sci USA 107:19102–19107
18. Leite NR, Krogh R, Xu W, Ishida Y, Iulek J, Leal WS, Oliva G
(2009) Structure of an odorant-binding protein from the mosquito
Aedes aegypti suggests a binding pocket covered by a pH-sensitive
Blid^. PLoS ONE 4:e8006
Molecular docking and molecular dynamics simulations of
EBF analogues in the OBP7 binding cavity were performed
to provide insight into the intermolecular binding mode and
thus facilitate the design of novel EBF analogues with higher
stability than EBF. Newly designed and synthesized com-
pound D4, which had a t-butyl-substituted benzene ring and
N-methyl formamide linkage, exhibited good binding affinity
and had a high docking score because of multiple hydropho-
bic interactions with OBP7. The docking scores and binding
affinities of the known pyrazole-substituted EBF analogues
with an N-methyl formamide or ester linkage were higher than
those of the analogues with an amide linkage. When the un-
stable conjugated double bond of EBF was replaced with a
benzene ring, the binding affinity and docking score increased
due to an additional π–π interaction between the delocalized
electrons on the benzene and nearby protein residues.
Substituting two electron-withdrawing F atoms on the ben-
zene ring further delocalized the electrons, leading to electro-
static interactions and thus a significant increase in the binding
affinity to the protein. Therefore, because the OBP7 binding
cavity is hydrophobic, EBF analogues should first be
modified with hydrophobic groups to increase the hy-
drophobic contact area between the ligand and protein
binding tunnel. In addition, electron delocalization over
the conjugated double bond or aromatic ring in each
EBF analogue should strengthen the binding by increas-
ing its electrostatic interactions with the protein. This
study provides an insight that should aid the future de-
velopment of new stable EBF analogues with good
binding affinities based on the OBP structure.
Acknowledgments We thank Dr. Pelosi for fruitful discussions and
writing assistance. This work was supported by the National Scientific
and Technology Supporting Program of China (2011BAE06B05-5) and
the National Natural Science Foundation of China (21132003,
31371946).
Author contributions S.S. Wang, S.Q. Du, and H.X. Duan conceived
and designed the experiments. Y.F. Sun, Y.G. Qin, and X.L. Yang pre-
pared the EBF analogues. S.S. Wang, Y.F. Sun, and H.X. Duan analyzed
the data. S.S. Wang and H.X. Duan wrote the first draft of the manuscript.
H.X. Duan and X.L. Yang made critical revisions and approved the final
manuscript. All the authors reviewed and approved the final manuscript.
The authors declare no conflict of interest.
19. Lagarde A, Spinelli S, Tegoni M, He XL, Field L, Zhou JJ,
Cambillau C (2011) The crystal structure of ordorant binding pro-
tein 7 from Anopheles gambiae exhibits an outstanding adaptability
of its binding site. J Mol Biol 414:401–412