PAPER
Fluorinated Pyrrolo[2,3-d]pyrimidine Nucleosides
2011
Anal. Calcd for C32H32ClFN4O6 (623.07): C, 61.69; H, 5.18; N,
8.99. Found: C, 61.66; H, 5.10; N, 9.03.
plied to FC (silica gel, column 4 × 10 cm), eluted with PE–EtOAc
(7:1). The main zone was collected and condensed to a colorless sol-
id, which was crystallized from MeOH to give colorless crystals of
10 (0.74 g, 61.7%); mp 144 °C; Rf = 0.55 (PE–EtOAc, 3:1).
1H NMR (250 MHz, DMSO-d6): d = 4.67–4.78 (m, 3 H, H-4¢, H-5¢),
5.76 (m, 1 H, H-2¢), 5.87 (m, 1 H, H-3¢), 6.95 (d, J = 14.89 Hz, 1 H,
H-1¢), 7.85 (s, 1 H, H-6), 7.47–7.75, 7.97–8.10 (m, 10 H, 2 C6H5),
8.76 (s, 1 H, H-2).
2-Amino-7-(2-deoxy-b-D-erythro-pentofuranosyl)-5-fluoro-4-
methoxy-7H-pyrrolo[2,3-d]pyrimidine (2c)
Compound 11 (140 mg, 0.22 mmol) was dissolved in 0.5 N NaOMe
in MeOH (4 mL), and the mixture was stirred under reflux for 2 h.
TLC monitoring showed completion of the reaction. The mixture
was evaporated and applied to a silica gel column, eluted with
CH2Cl2–MeOH (30:1–20:1) to form 2c as a colorless solid (50 mg,
87%); Rf = 0.34 (CH2Cl2–MeOH, 10:1).
19F NMR (235 MHz, DMSO-d6): d = –169.61 (F-5), –199.11 (dt,
2JF,H-2¢ = 49.4 Hz, 3JF,H-3¢ = 21.17, 3JF,H-1¢ = 18.82 Hz, F-2¢).
1H NMR (250 MHz, DMSO-d6): d = 2.03–2.09 (m, 1 H, H-2¢),
2.23–2.30 (m, 1 H, H-2¢), 3.45–3.50 (m, 2 H, H-5¢), 3.74 (m, 1 H,
H-4¢), 4.27 (m, 1 H, H-3¢), 4.91 (t, J = 5.5 Hz, 5¢-OH), 5.22 (d,
J = 1.80 Hz, 1 H, 3¢-OH), 6.42 (m, 3 H, H-1¢, NH2), 7.00 (br s, 1 H,
H-6).
UV (MeOH): lmax (e) = 228 (48200), 276 nm (8200).
Anal. Calcd for C25H18ClF2N3O5 (513.88): C, 58.43; H, 3.53; N,
8.18. Found: C, 58.58; H, 3.67; N, 8.05.
4-Amino-7-(2-deoxy-2-fluoro-b-D-arabinofuranosyl)-5-fluoro-
7H-pyrrolo[2,3-d] pyrimidine (1b)
19F NMR (235 MHz, DMSO-d6): d = –167.94 (F-5).
A suspension of compound 10 (2.2 g, 4.28 mmol) in a mixture of
25% aq NH4OH (150 mL) and dioxane (20 mL) was heated at
120 °C for 16 h in an autoclave. The mixture was then cooled and
evaporated to dryness. The residue was subjected to FC (silica gel,
column 5 × 15 cm), and eluted with CH2Cl2–MeOH (9:1) to yield
colorless solid. Crystallization from MeOH afforded 1b as colorless
crystals (0.88 g, 72%); mp 200 °C; Rf = 0.18 (CH2Cl2–MeOH,
10:1).
1H NMR (250 MHz, DMSO-d6): d = 3.56–3.68 (m, 2 H, H-5¢), 3.75
(m, 1 H, H-4¢), 4.34 (m, 1 H, H-3¢), 5.00 (t, J = 5.55 Hz, 1 H, 5¢-
OH), 5.10 (dt, JF,2¢ = 52.85 Hz, 1 H, H-2¢), 5.89 (d, 1 H, J = 4.35 Hz,
3¢-OH), 6.56 (d, J = 3.37 Hz, 1 H, H-1¢), 7.04 (br s, 2 H, NH2), 7.23
(s, 1 H, H-6), 8.08 (s, 1 H, H-2).
UV (MeOH): lmax (e) = 264 (8900), 287 nm (6100).
Anal. Calcd for C12H15FN4O4 (298.27): C, 48.32; H, 5.07; N, 18.78.
Found: C, 48.46; H, 5.05; N, 18.62.
2-Amino-7-(2-deoxy-b-D-erythro-pentofuranosyl)-3,7-dihydro-
5-fluoro-4H-pyrrolo[2,3-d]pyrimidin-4-one (3c)
Compound 2c (60 mg, 0.20 mmol) was dissolved in aq 2 N NaOH
(5 mL) and refluxed for 2 h. The mixture was cooled and neutralized
with 1 N AcOH and evaporated to dryness. The residue was applied
to a silica gel column and eluted with CH2Cl2–MeOH (10:1) to ob-
tain the desired product 3c as a colorless solid (40 mg, 70.5%); Rf =
0.12 (CH2Cl2–MeOH, 10:1).
1H NMR (250 MHz, DMSO-d6): d = 2.00–2.07 (m, 1 H, H-2¢),
2.19–2.30 (m, 1 H, H-2¢), 3.45–3.47 (m, 2 H, H-5¢), 3.73 (m, 1 H,
H-4¢), 4.25 (m, 1 H, H-3¢), 4.91 (m, 1 H, 5¢-OH), 5.22 (m, 1 H, 3¢-
OH), 6.32 (m, 1 H, H-1¢), 6.43 (s, 2 H, NH2), 6.81 (s, 1 H, H-6),
10.60 (br s, 1 H, NH).
19F NMR (235 MHz, DMSO-d6): d = –168.30 (F-5), –199.68 (dd,
2JF,H-2¢ = 52.9 Hz, 3JF,H-3¢ = 21.7, 3JF,H-1¢ = 16.13 Hz, F-2¢).
UV (MeOH): lmax (e) = 278 nm (10000).
Anal. Calcd for C11H12F2N4O3 (286.23): C, 46.16; H, 4.23; N,
19.57. Found: C, 46.00; H, 4.31; N, 19.51.
19F NMR (235 MHz, DMSO-d6): d = –167.89 (F-5).
UV (MeOH): lmax (e) = 261 nm (10700).
7-(2-Deoxy-2-fluoro-b-D-arabinofuranosyl)-5-fluoro-4-meth-
oxy-7H-pyrrolo[2,3-d]pyrimidine (2b)
MS (ESI-TOF): m/z calcd for C11H14FN4O4 [M + 1]+: 285.10;
found: 285.10; m/z calcd for C11H13FN4O4 + Na [M + Na]+: 307.08;
found: 307.08.
Compound 10 (0.3 g, 0.58 mmol) was suspended in 0.2 N NaOMe
in MeOH (35 mL), the suspension was stirred at r.t. for 12 h, and the
formed solution was neutralized with AcOH. The mixture was
evaporated and applied to FC (silica gel, column 2 × 10 cm) and
eluted with CH2Cl2–MeOH (12:1) to yield 2b as colorless solid
(0.17 g, 97%); Rf = 0.53 (CH2Cl2–MeOH, 9:1).
1H NMR (250 MHz, DMSO-d6): d = 3.58–3.66 (m, 2 H, H-5¢), 3.79
(m, 1 H, H-4¢), 4.07 (s, 3 H, OCH3), 4.34 (m, J3¢,F = 20.01 Hz, 1 H,
H-3¢), 5.06 (t, J = 5.00 Hz, 1 H, 5¢-OH), 5.29 (dt, JF,2¢ = 50.02 Hz, 1
H, H-2¢), 5.92 (d, 1 H, J = 5.00 Hz, 3¢-OH), 6.67 (dd, J1¢,2¢ = 3.9 Hz,
1 H, H-1¢), 7.54 (s, 1 H, H-6), 8.46 (s, 1 H, H-2).
Anal. Calcd for C11H13FN4O4 (284.24): C, 46.48; H, 4.61; N, 19.71.
Found: C, 46.59; H, 4.51; N, 19.41.
1-Bromo-2-deoxy-2-fluoro-3,5-di-O-benzoyl-a-D-arabinofura-
nose (9)20
To a solution of 1,3,5-tri-O-benzoyl-2-fluoro-a-D-arabinofuranose
(1.0 g, 2.15 mmol) in CH2Cl2 (5 mL), was added a 30% HBr solu-
tion in AcOH (1.2 mL). The mixture was stirred at r.t. for 16 h and
evaporated to dryness. The oily residue was redissolved in CH2Cl2
(20 mL), the solution washed with H2O (5 mL) and aq sat. NaHCO3
solution (5 mL), and dried (Na2SO4). Concentration gave a viscous
syrup which was further dried under high vacuum for 18 h at r.t. The
colorless syrup 9 (840 mg, 92%) was used in the next step without
purification.
19F NMR (235 MHz, DMSO-d6): d = –168.11 (F-5), –199.93 (dt,
2JF,H-2' = 52.9, 3JF,H-3¢ = 21.7, 3JF,H-1¢ = 16.13 Hz, F-2¢).
UV (MeOH): lmax (e) = 276 nm (6700).
Anal. Calcd for C12H13F2N3O4 (301.25): C, 47.84; H, 4.35; N,
13.95. Found: C, 48.00; H, 4.46; N, 13.85.
4-Chloro-7-(2-deoxy-2-fluoro-3,5-di-O-benzoyl-b-D-arabino-
furanosyl)-5-fluoro-7H-pyrrolo[2,3-d]pyrimidine (10)
7-(2-Deoxy-2-fluoro-b-D-arabinofuranosyl)-3,7-dihydro-5-fluo-
ro-4H-pyrrolo[2,3-d]pyrimidin-4-one (3b)
To a stirred suspension of 4-chloro-5-fluoro-7H-pyrrolo[2,3-d]pyri-
midine (4b; 0.4 g, 2.33 mmol) in anhyd MeCN (17 mL), powdered
KOH (85%, 0.61 g, 9.24 mmol) was added. After the mixture was
stirred for 10 min at r.t., the phase-transfer catalyst TDA-1 (0.12
mL, 0.38 mmol) was added. The stirring was continued for another
15 min, and then a solution of bromo sugar 9 (1.38 g, 3.26 mmol) in
MeCN (20 mL) was added in portions. After stirring for another 10
min, the mixture was filtered. The filtrate was concentrated and ap-
A solution of 2b (140 mg, 0.46 mmol) in aq 2 N NaOH (2.8 mL)
was refluxed for 1 h. After cooling to r.t., the mixture was neutral-
ized with 1 N AcOH. The mixture was evaporated to dryness and
applied to a silica gel column, elution with CH2Cl2–MeOH (15:1)
gave a colorless solid which was recrystallized from MeOH to give
colorless crystals of 3b (50 mg, 37%); Rf = 0.34 (CH2Cl2–MeOH,
10:1).
Synthesis 2006, No. 12, 2005–2012 © Thieme Stuttgart · New York