Article
Journal of Medicinal Chemistry, 2009, Vol. 52, No. 14 4427
reactions were quenched with 50 μL of acetonitrile con-
taining 7 μM internal standard (Pep8-P(O2)), then centrifuged
(15000g ꢀ 10 min) and subjected to HPLC-MS analysis. The
Km value was determined by performing a nonlinear least-
squares best fit to the Michaelis-Menten equation using Systat
Sigmaplot 10.0.
pure compounds, LC-MS analysis of the kinase reaction
mixture and the mixture solution including internal standard
and Pep8-P, HPLC and MS analysis of Pep8, Pep8-P, and Pep8-
P(O2), table listing peptide library for TSSK1 peptide sub-
strate screening, Z0 factor determination, the structure, and
their physical data of single compound with 1,2,7-trialky-1H-
imidazo[4,5-g]quinoxalin-6-one. This material is available free
4.7. Luminescent Kinase Assay. All TSSK1 reactions were
performed in a kinase buffer (40 mM Tris-HCl buffer, 20 mM
MgCl2, 0.1 mg/mL BSA, 2 mM DTT). To obtain the best
performance when using Kinase-Glo reagent, optimal kinase
conditions were established. TSSK1 was resuspended in 25 μL
of kinase buffer. The kinase reaction was performed by adding
25 μL of a mixture containing ATP and peptide substrate (Pep8)
in kinase buffer. The final reaction conditions were 0.5 μg/well
TSSK1, 10 μM Pep8, and 1.5 μM ATP. The reaction was
incubated for 2 h at 37 °C, and then an equal volume of
Kinase-Glo reagent (50 μL) was added. As a control, the kinase
reaction was performed with the same samples in the absence of
peptide substrate (no pep8) and without TSSK1. Meanwhile,
staurosporine was chosen as a positive control at the concentra-
tion of 100 μM. Samples were then incubated for 10 min at room
temperature, and the luminescence developed was recorded by
a luminometer and expressed as RLU.
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4.8. LC-MS-Based Assay. The LC-MS-based TSSK1 assay,
an end-point assay that measures Pep8-P production, was per-
formed in a 0.5 mL Eppendorf tube with a reaction volume of 50
μL. All TSSK1 reactions were performed in a kinase buffer (40 mM
Tris-HCl buffer, 20 mM MgCl2, 0.1 mg/mL BSA, 2 mM DTT).
TSSK1 was resuspended in 25 μL of kinase buffer. The kinase
reaction was performed by adding 25 μL of a mixture containing
ATP and peptide substrate (Pep8) in kinase buffer. The final
reaction conditions were 75 ng/well TSSK1, 10 μM Pep8, and
25 μM ATP. The reaction was incubated for 90 min at 37 °C.
Enzyme reactions were quenched by addition of acetonitrile
(50 μL) and centrifuged (15000g ꢀ 10 min). A 60 μL volume of
quenched reaction mixture was subjected to HPLC-MS analysis.
4.9. Preparation of Individual 1,2,7-Trialkyl-1H-imidazo[4,5-
g]quinoxalin-6-one Compounds. To a stirred solution of DFDNB
(204 mg, 1.0 mmol) in THF (20 mL), DIPEA (4.0 mmol), and
NH2CH(R1)COOMe HCl (1.0 mmol) were added sequentially.
3
The reactions were then continued for 3 h at room temperature
with gentle stirring. Continuously, exactly 1.0 mmol of alkyl
primary amine was added and allowed to stand for an additional
18 h. The solvent was removed under reduced pressure to give
compound 11, which was dissolved in dichloromethane, washed
with water, and dried. Compound 11 was then dissolved in
a mixed solvent of THF (10 mL) and EtOH (10 mL), and 10%
Pd/C was added, followed by immediate addition of ammonium
formate (1.26 g). The suspensions were stirred continuously
at room temperature. When hydrogenation was complete, the
Pd/C was filtered and the solvent removed to give crude
compound 12. After purification, parallel synthesis was applied
to obtain compound 13. To each reaction tube in a 96-well H+P
parallel synthesizer, 0.16 mmol of compound 12 and 0.32 mmol
of aldehyde were added and dissolved in 6 mL dioxane, to which
300 μL of acetic acid was added. The suspensions were stirred at
77 °C for 8 h, after which the solvent was removed to give the
crude product. All reactions were monitored by LC-MS. All
the products were recrystallized or purified by preparative RP-
HPLC and were further characterized by LC/MS and 1H NMR.
Acknowledgment. This study was supported by the National
High Technology Research and Development Program of China
(National 863 Program, no. 2006AA020501). We thank Dr. Shu
Fang and Sun Xiaoqing (Shanghai Genomics, Inc.) for their nice
collaboration on TSSK1 expression and purification as well as
the assistance of TSSK1 peptide substrate identification.
Supporting Information Available: Protein sequence and
purification methods of TSSK1, screening results of 640 single