ACS Chemical Biology
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excellent yield. The primary alcohol at C6 was converted to an
iodide under Appel conditions in quantitative yields, and the
elimination of hydrogen iodide with a base produced exo-
methylene derivative 8.
The elimination proved difficult under a variety of
conditions, giving undesired isomerization of the exo-
methylene 8 to the thermodynamically favored endo-alkene
9. Most commonly, DBU has been used in DMF at 70−80
°C,17,19−21 and while these conditions are reported to produce
the desired exo-methylene in good yields, our experience has
shown minimal success. At best, we were able to isolate the
desired product in a 44% yield; however, significant isomer-
ization was still observed. In one instance, we were able to
isolate a significant quantity of a second product, which was
confirmed by NMR and mass spectrometry to be a DBU
S27). Using fresh KOtBu in THF,22 we were able to achieve
very good yields quite rapidly under much milder conditions.
Note, however, that this reaction was highly sensitive to
moisture, making it difficult to reproduce.
The Ferrier II carbocyclization of compound 8 was carried
out with palladium chloride in aqueous dioxane, which
proceeded in a 75% yield and produced an inseparable mixture
of pseudo-α and -β diastereomers in a 3:1 ratio, consistent with
a previous report.17 The two isomers could be separated upon
conversion to the silyl ethers 11a and 11b; however,
degradation of the α-isomer was observed, resulting in a
different ratio of products. This degradation was also observed
when we performed this reaction with pure pseudo-α
diastereomer of 10.
Homologation of 11 at C5 using the Tebbe reagent
produced exo-methylene derivative 12 in good yields (Scheme
1). Interestingly, homologation under Wittig conditions
afforded only a 51% yield with the pseudo-α-isomer, resulting
in two elimination by-products being formed, with the loss of
either the C3-OBn (15%) or C1-OTBS (29%); this was not
observed with the pseudo-β isomer. Hydroboration-oxidation
of 12 led predominantly to the undesired ido configuration at
C5 (13) in contrast to results reported by Ko et al.17 Careful
inspection of both the 1H and 2D NMR spectra for 13a, which
matches that obtained by Ko, showed a small coupling
constant (5 Hz) of H4 to H5, suggesting that CH2OH is in the
axial orientation (Figure 2a) and not the equatorial orientation
as previously reported.17 We were able to convert this product
back to the desired gluco configuration (14) in three steps by
oxidation to the corresponding aldehyde, isomerization to the
low-energy isomer under basic conditions,22 and reduction
back to the alcohol. Examination of the NMR spectra of this
product showed a clear, large H4/H5 coupling constant of 11
Hz, indicative of the gluco configuration (Figure 2b).
Phosphorylation with diphenyl phosphoryl chloride afforded
C6P derivatives 15a and 16 in good yields. The TBS
protecting group of the β isomer was easily cleaved upon
acidic workup, while the TBS group of the α-isomer proved
difficult to deprotect under the same conditions. Interestingly,
the use of TBAF to deprotect the TBS group of 15a resulted in
fluorine substitution at phosphorus and not silyl deprotection,
Final deprotection of both the benzyl and phenyl groups
required two separate hydrogenolysis steps, with the diphenyl
phosphate deprotection proceeding in lower yields. Overall, α-
C6P and β-C6P were obtained in 7 and 1% yields, respectively,
in 14 steps.
Figure 1. (a) Kanosamine biosynthesis in B. subtilis. (b) Enolate
formation of 3oG6P when released into solution. (c) Mutarotation of
G6P and synthetic analogues as mimics of the various forms of G6P.
product. Additionally, we have not been able to synthesize this
compound, likely due to rapid degradation.
We seek a complete understanding of this unusual enzymatic
function, and unfortunately, we have been unable to generate a
crystal structure of NtdC (with or without G6P). The rapid
mutarotation of G6P in solution means that all forms of the
sugar are easily accessible on the time scale of the enzymatic
reaction (Figure 1c), meaning that we do not know the nature
of the substrate form recognized by the enzyme. Furthermore,
we have observed no activity with any substrates that bear
substitutions at C1, such as methyl or UDP glycosides,
suggesting this position is crucial for substrate binding to the
active site. This prompted us to synthesize carbocyclic
analogues of G6P (α- and β-carbaglucose 6-phosphate,
C6P), which can mimic the cyclic forms of the substrate, as
well as an acyclic analogue (sorbitol 6-phosphate, S6P) to
mimic the open chain form (Figure 1c). Additionally, since
these carbocyclic compounds cannot undergo the same ring
opening as G6P, the stereochemistry at the pseudo-anomeric
position remains fixed, allowing us to determine the anomeric
preference of NtdC.
RESULTS AND DISCUSSION
■
Synthesis of Sorbitol 6-Phosphate. S6P (1) was
synthesized in one step in an 80% yield from G6P using
NaBH4. After purification using anion exchange chromatog-
raphy, 11B NMR showed contaminating boric acid present in
the sample, which was then further removed as trimethyl
borate by stirring with methanol under vacuum.
Synthesis of α-C6P and β-C6P via Ferrier II
Rearrangement. We first chose to synthesize carbocyclic
analogues 2 and 3 using the well-known Ferrier-II carbocyc-
lization reaction and readily accessible glucose precursors,
similar to what Ko et al. reported to generate carbocyclic
glucose 1-phosphate.17 The Ferrier substrate was synthesized
in four steps starting from commercially available methyl 4,6-
O-benzylidene-α-D-glucopyranoside (4, Scheme 1). Benzyla-
tion at C2 and C3 and subsequent regioselective cleavage of
the 4,6-benzylidene18 afforded tri-O-benzyl derivative 6 in an
B
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