M.S. Surendra Babu et al. / Polyhedron 26 (2007) 572–580
573
electrophoresis, was purchased from Sigma–Aldrich, Calf
thymus DNA and plasmid pBR322 were purchased from
Genie Biolabs, Bangalore, India.
where ea, ef and eb are the apparent free and bound metal
complex extinction coefficients, respectively. A plot of
[DNA]/(ea ꢀ ef) versus [DNA] gave a slope of 1/(eb ꢀ ef)
and a Y-intercept equal to 1/Kb (ea ꢀ ef), Kb is the ratio
of the slope to the Y-intercept.
2.2. Instrumentation
2.4. Assay of nuclease activity
The elemental analyses were performed using a Perkin–
Elmer 2400 CHNS elemental analyzer. Magnetic moments
were determined in the polycrystalline state on a PAR
model-155 vibrating sample magnetometer operating at
field strength of 2–8 kG. High purity Ni metal (saturation
moment 55 emu/g) was used as standard. The molar con-
ductance of the complexes in DMF (10ꢀ3 M) solution
was measured at 28 2 ꢁC with a systronic model 303
direct-reading conductivity bridge. The electronic spectra
were recorded in DMF with a Schimadzu UV-160A spec-
trophotometer. FT-IR spectra were recorded in the range
4000–50 cmꢀ1 with a Bruker IFS 66V in KBr and polyeth-
ylene medium. ESR spectra were recorded on Varian E-122
X-band spectrophotometers at liquid nitrogen temperature
in DMF. The voltammetric measurements were performed
on Bio-Analytical Systems (BAS), CV-27 assembly in con-
junction with an X–Y recorder. Measurements were made
on the degassed (N2 bubbling for 5 min) solution in
DMF (10ꢀ3 M) containing 0.1 M tetraethyl ammonium
perchlorate as the supporting electrolyte. The three-
electrode system consisted of a glassy carbon (working),
platinum (auxiliary) and Ag/AgCl (reference) electrodes.
UV–Vis spectra were recorded on a Tech-Comp UV-8500
instrument.
A DMF solution containing the metal complexes (1 ll
of 1 mM) was taken in a clean eppendroff tube and plasmid
DNA (1 ll of 0.10 lg/ml) was added. The contents were
incubated for 2 h at 37 ꢁC and loaded on 1% agarose gel
after mixing 5 ll of loading buffer (0.25% bromophenol
blue + 25% xylenecyanol + 30% glycerol sterilized dis-
tilled). Electrophoresis was performed at constant voltage
(80 V) until the bromophenol blue reached to 3/4 of the
gel. Then the gel was stained for 10 min by immersing it
in ethidium bromide solution. The gel was then de-stained
for 10 min by keeping it in sterile distilled water and the
plasmid band was visualized by viewing the gel under a
transilluminator and photographed. The efficiency of the
DNA cleavage was measured by determining the ability
of the complex to form open circular (OC) or nicked circu-
lar (NC) DNA from its supercoiled (SC) form by quantita-
tively estimating the intensities of the bands using the
Vilber Lourmat (V 99.01) Gel Documentation System.
The reactions were carried out under hydrolytic conditions.
A control experiment was done in presences of hydroxyl
radical scavenger DMSO and singlet oxygen quencher
azide ion.
3. Preparation
2.3. DNA binding experiments
3.1. Preparation of ligands
A solution of CT DNA in 0.5 mM NaCl/5 mM Tris–
HCl (pH 7.0) gave a ratio of UV absorbance at 260 and
280 nm, A260/A280 of 1.8–1.9, indicating DNA was suffi-
ciently free of protein. A concentrated stock solution of
DNA was prepared in 5 mM Tris–HCl/50 mM NaCl in
water, pH 7.0 and the concentration of CT DNA were
determined by UV absorbance at 260 nm after 1:100 dilu-
tions (in 250 lM in NP). The molar absorption coefficient
was taken as 6600 Mꢀ1 [11]. Stock solutions were stored at
4 ꢁC and were used after no more than four days. Doubly
distilled water was used to prepare the buffer solutions.
Solution were prepared with the appropriate copper com-
plexes (35 lM of a 1.0 mM solution in DMF), CT DNA
(diluted from a 1 mg/ml solution), NaCl (final concentra-
tion 50 mM) and Tris–HCl buffer (pH 7.0, final concentra-
tion 50 mM) and diluted with H2O to a total volume of
1 ml. After equilibration (ca. 10 min), the spectra were
recorded against an analogous blank solution containing
the same concentration of DNA/NaCl and Tris–HCl
buffer.
Resactophenone oxime (RPO) and 2,4-dihydroxybenzo-
phenone oxime (DBO) ligands were prepared by the
reaction of hydroxylammoniumchloride (NH2OH Æ HCl)
with resacetophenone and 2,4-dihydroxybenzophenone,
respectively.
Hydroxylammoniumchloride (0.03 mol) and resaceto-
phenone (0.03 mol) were taken in 50% aqueous methanol
or 2,4-dihydroxybenzophenone (0.03 mol) in benzene sol-
vent. The resulting mixture was acidified with a few drops
of glacial acetic acid and refluxed for 2–3 h. The precipi-
tated compound was filtered, washed with cold water dried
under vacuum and recrystallized from aqueous ethanol.
The infra red spectrum of RPO and DBO shows strong
and broad bands due to hydrogen-bonded phenolic OH at
20-position in the region 3000–2800 cmꢀ1. They also exhibit
two separate OH bands due to oxime OH at 3237,
3137 cmꢀ1 and phenolic OH at 3400, 3350 cmꢀ1, respec-
tively, in addition to C@N stretching at 1598, 1588
cmꢀ1, respectively. The 1H NMR spectra of RPO and
DBO were recorded in DMSO-d6 solvent. RPO shows
signals at 2.22 (s, 3H), 6.42–7.21 (m, 3H), 9.15 (s, 1H)
10.85 (s, 1H) and 11.79 (s, 1H) assigned to –CH3, –C6H3,
The data were then fitted to Eq. (1) to obtain the intrin-
sic binding constant, Kb [12]
½DNAꢁ=ðea ꢀ ef Þ ¼ ½DNAꢁ=ðeb ꢀ ef Þ þ 1=Kbðea ꢀ ef Þ;
ð1Þ