Chiral DNA Gyrase Inhibitors
Journal of Medicinal Chemistry, 2005, Vol. 48, No. 4 1235
J ) 8, 6 Hz, 1H), 8.20 (d, J ) 2 Hz, 1H); 13C NMR (75.6 MHz,
CDCl3) δ 18.8, 34.1, 81.0, 114.9 (d, J ) 19 Hz), 118.4 (d, J )
18 Hz), 127.50, 127.56, 129.94, 130.00, 158.6; IR (neat) 3050,
2980, 2930, 1815, 1730, 1510, 1415, 1325, 1310 cm-1; MS (CI)
m/z 182 (M+ + H); calcd for C10H10F2N: 182.0781, found
182.0756.
with suction and dried under vacuum pressure overnight to a
light brown powder (240 mg, 0.83 mmol, 69% yield): 1H NMR
(300 MHz, TFA-d) δ 1.54 (d, J ) 4 Hz, 3H), 3.15 (br d, J ) 10
Hz, 1H), 3.65 (br d, J ) 10 Hz, 1H), 5.17 (m, 1H), 7.34 (br t, J
) 6 Hz, 1H), 7.78 (s, 1H), 7.88 (dd, J ) 4, 2 Hz, 1H), 9.24 (s,
1H); 13C NMR (125.8 MHz, TFA-d) δ 19.8, 34.1, 64.1, 112.1,
114.3, 114.6, 116.6, 118.6 (d, J ) 21.9 Hz), 118.9, 121.2 (d, J
) 19.0 Hz), 150.2, 152.0 (d, J ) 48.7 Hz), 152.8 (d, J ) 48.7
Hz), 170.7, 174.7; IR (KBr) 3390, 3000, 2940, 1685, 1610, 1490,
1410, 1290, 1250, 1190, 1140, 860 cm-1; MS (CI) m/z 292 (M+
+ H), 247; calcd for C15H12NO3F2: 292.0769, found 292.0785.
10-Fluoro-6-methyl-6,7,-dihydro-9-piperazinyl-2H-ben-
zo[a]quinolizin-2-one-3-carboxylic Acid (35). A mixture
of difluoride 34 (50 mg, 0.17 mmol), piperazine (1.5 equiv, 0.26
mmol, 22 mg), triethylamine (3 equiv, 0.51 mmol, 52 mg), and
acetonitrile (1.5 mL) was refluxed for 29.5 h. After cooling,
the volatiles were removed under reduced pressure. The
residue was triturated with Et2O and filtered with suction to
provide a dark brown solid (21 mg, 0.06 mmol, 35% yield): mp
216-217 °C (dec); 1H NMR (300 MHz, DMSO-d6) δ 1.12 (d, J
) 4 Hz, 3H), 2.74-2.88 (m, 9H), 3.01-3.10 (m, 1H), 4.39 (m,
1H), 6.93 (d, J ) 5 Hz, 1H), 7.26 (s, 1H), 7.86 (d, J ) 9 Hz,
1H), 8.76 (s, 1H); 13C NMR (125.8 MHz, TFA-d) δ 20.0, 34.4,
43.6, 46.7, 48.9, 49.0, 64.2, 113.0, 121.4, 121.9, 133.6, 145.1,
150.0, 153.4, 155.8, 157.8, 166.6, 171.0, 174.3; IR (KBr) 3520,
3440, 3370, 1620, 1600 cm-1; MS (CI) m/z 358 (M+ + H), 314,
292, 129, 128, 115, 87; calcd for C19H21FN3O3: 358.1541, found
358.1567.
Ethyl 2-Ethoxymethylene-3-trimethylsiloxy-3-buten-
oate (31). Fused zinc chloride (260 mg) was added to triethyl-
amine (2.2 equiv, 139 mmol, 14.10 g, 19.4 mL) and stirred for
1 h at room temperature under N2 until the salt was suspended
in the amine. To this was added ethyl (ethoxymethylene)-
acetoacetate (30, 11.79 g, 63.3 mmol) in benzene (14.2 mL)
and then chlorotrimethylsilane (2.0 equiv, 127 mmol, 13.80 g,
16.1 mL). After 30 min, the temperature was raised to 40 °C
and the reaction was stirred for 19.5 h. The mixture was
filtered with suction and then run through a plug of Celite
545 with the aid of Et2O. All remaining particulate matter was
removed by two gravity filtrations through three filter paper
circles, and the resulting solution was evaporated under
reduced pressure to a dark red oil (12.30 g, 47.6 mmol, 75%
yield): 1H NMR (300 MHz, CDCl3) δ 0.10 (s, 9H), 1.01-1.15
(m, 6H), 3.93-4.08 (m, 4H), 4.14 (d, J ) 2 Hz, 2H), 6.59 (s,
1H); 13C NMR (75.6 MHz, CDCl3) δ 0.0, 14.2, 15.2, 60.3, 70.3,
91.9, 97.6, 151.7, 153.1, 165.8; IR (neat) 2960, 2890, 1710, 1620,
1370, 1300, 1240, 1175, 1125, 1070, 1010, 840 cm-1; MS (CI)
m/z 259 (M+ + H), 207, 187, 145, 119; calcd for C12H23O4Si:
259.1368, found 259.1366.
Ethyl 9,10-Difluoro-6-methyl-1,6,7,11b-tetrahydro-2H-
benzo[a]quinolizin-2-one-3-carboxylate (32). To dihy-
droisoquinoline 28 (5.00 g, 27.6 mmol) in CH2Cl2 (80 mL) at
room temperature under N2 was added trifluoroacetic acid (1.0
equiv, 27.6 mmol, 3.15 g, 2.1 mL). After 5 min, boron trifluoride
diethyl etherate (1.0 equiv, 27.6 mmol, 3.92 g, 3.5 mL) was
added. After another 5 min, diene 31 (1.5 equiv, 41.4 mmol,
10.70 g) was added and the mixture was stirred at room
temperature for 2 h. The reaction was quenched by washing
with NaHCO3 (2 × 80 mL). The organic phase was separated,
dried (Na2SO4), filtered, and evaporated under reduced pres-
sure. The resulting dark oil was dissolved in MeOH (110 mL)
and stirred over anhyd Na2CO3 (2.76 g) at room temperature
for 1 h. The suspension was filtered and concentrated under
reduced pressure, and the residue was partitioned between
CH2Cl2 (100 mL) and H2O (100 mL). The organic phase was
dried (Na2SO4), filtered, and evaporated under reduced pres-
sure to a hard, dark brown residue (8.73 g, 27.2 mmol, 99%
yield) that was a complex mixture of diastereomers: 1H NMR
(300 MHz, CDCl3) δ 0.92-1.47 (m, 6H), 2.19-2.86 (m, 4H),
3.19-3.35 (m, 1H), 4.03-4.28 (m, 2H), 4.67-4.72 (m, 1H),
6.85-7.10 (m, 2H), 8.24 (s), 8.35 (s, 1H for both); MS (CI) m/z
322 (M+ + H), 276, 240, 194, 182, 127.
Ethyl9,10-Difluoro-6-methyl-6,7,-dihydro-2H-benzo[a]-
quinolizin-2-one-3-carboxylate (33). Dihydropyridone 32
(0.15 g, 0.47 mmol) and tetrachloro-1,4-benzoquinone (1.5
equiv, 0.71 mmol, 170 mg) in THF (2 mL) was refluxed for 23
h. The solvent was evaporated under reduced pressure, and
the crude product was purified by column chromatography (10:
1, MeOH-CHCl3) to give a dark brown residue (70 mg, 0.22
mmol, 47% yield): mp 134-135 °C (dec); 1H NMR (300 MHz,
CDCl3) δ 1.24-1.42 (m, overlapping d, 1.30, J ) 4 Hz, t, 1.36,
J ) 4 Hz, 6H), 2.82 (dd, J ) 1, 10 Hz), 1H), 3.37 (dd, J ) 2, 6
Hz, 1H), 4.29-4.50 (m, overlapping q, 4.29, J ) 4 Hz, m, 4.43,
3H), 6.86 (s, 1H), 7.09 (dd, J ) 5, 1 Hz, 1H), 7.52 (dd, J ) 8,
2 Hz, 1H), 8.24 (s, 1H); 13C NMR (75.6 MHz, CDCl3) δ 14.4,
19.9, 33.6, 57.0, 61.1, 114.9 (d, J ) 20 Hz), 118.1 (d, J ) 26
Hz), 123.7, 128.9, 141.5, 146.0, 148.0, 150.1, 151.2, 153.5,
164.6, 175.8; IR (KBr) 2970, 1720, 1625, 1500 cm-1; MS (CI)
m/z 320 (M+ + H), 247, 292; calcd for C17H16NO3F2: 320.1070,
found 320.1098.
10-Fluoro-6-methyl-6,7,-dihydro-9-(1,1-dimethylhydrazi-
nyl)-2H-benzo[a]quinolizin-2-one-3-carboxylic Acid (36).
A mixture of difluoride 34 (50 mg, 0.17 mmol) in 48%
tetrafluoroboric acid (1 mL) was heated at 90-100° for 19 h.
After being cooled to room temperature, the suspension was
poured into ice-water (5 mL) and filtered with suction. The
solid was washed with water and dried under vacuum pressure
to give a dark brown solid (55 mg). A mixture of this
intermediate boron difluoride chelate (55 mg, 0.16 mmol), 1,1-
dimethylhydrazine (1.5 equiv, 0.24 mmol, 25 mg, 19 µL),
triethylamine (3 equiv, 0.49 mmol, 50 mg, 69 µL), and
acetonitrile (1 mL) was refluxed for 24 h. After cooling, the
volatiles were removed under reduced pressure. The residue
was triturated with Et2O and filtered with suction to provide
a light brown solid (34 mg, 0.10 mmol, 64% yield): 1H NMR
(300 MHz, TFA-d) δ 1.70 (d, J ) 4 Hz, 3H), 3.28-3.90 (m,
8H), 5.33 (m, 1H), 7.43-7.56 (m, 1H), 7.93-8.38 (m, 3H); IR
(KBr) 3450 (br), 3400, 1695, 1625, 1605, 1300 cm-1; MS (CI)
m/z 332 (M+ + H), 329, 307, 289, 254, 232, 176, 154, 137; calcd
for C17H19N3O3F: 332.3487, found 332.341.
Acknowledgment. The authors gratefully acknowl-
edge partial financial support of this work by grants
from the NIH-AID Institute, USA, the Kansas Health
Foundation for a stipend to R.A.F., and the American
Foundation for Pharmaceutical Education for a stipend
to P.D.. We also thank Drs. Qun Li, Daniel T. W. Shu,
Jacob Plattner, and their associates at Abbott Labora-
tories for some of the microbiological evaluations.
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