PAPER
A New Synthetic Approach for the Synthesis of N2-Modified Guanosines
1799
1 H, H-4¢), 4.42–4.46 (m, 1 H, H-3¢), 4.70–4.73 (t, 1 H, J = 5.8 Hz,
5¢-OH), 5.27–5.28 (d, 1 H, 3¢-OH), 6.12–6.16 (t, 1 H, J = 7.1 Hz, H-
1¢), 6.59–6.62 (t, 1 H, N2-H), 7.89 (s, 1 H, H-8), 10.72 (s, 1 H, N1-
H).
13C NMR (62.8 MHz, DMSO-d6): d = 15.9 (C-16), 22.2 (C-15),
27.8 (C-14), 36.1 (C-2¢), 38.6–40.4 (C-13 covered by DMSO), 61.9
(C-5¢), 70.8 (C-3¢), 85.1 (C-1¢), 87.5 (C-4¢), 117.6 (C-5), 120.5
(CN), 151.5 (C-4), 152.2 (C-2), 155.4 (C-6).
3¢,5¢-O-Di-tert-butyldimethylsilyl-2¢-deoxy-7-(p-iodobenzyl)-4-
desmethylwyosine (6)
The reaction was carried out in a dry flask under an argon atmo-
sphere. To a solution of 5 (3.65 g; 6.84 mmol) in anhyd DMF (40
mL) were added K2CO3 (1.23 g; 8.88 mmol) and p-iodobenzylbro-
mide (2.23 g; 7.52 mmol). After 30 min a precipitate formed; after
stirring for a further 2 h, the solvent was removed under reduced
pressure and column chromatography (CH2Cl2–i-PrOH, 40:1) of
the residue gave 1.93 g (57%) of 6.
1H NMR (250 MHz, CDCl3): d = –0.02 (s, 6 H, SiCH3), 0.00 (s, 6
H, SiCH3), 0.81 (s, 18 H, Si-t-Bu), 2.12 (s, 3 H, 8-CH3), 2.15–2.30
(m, 1 H, H-2¢), 2.35–2.50 (m, 1 H, H-2¢), 3.68–3.69 (m, 2 H, H-5¢),
3.87–3.89 (m, 1 H, H-4¢), 4.47–4.48 (m, 1 H, H-3¢), 5.12 (s, 2 H, 13-
CH2), 6.20–6.30 (t, 1 H, J = 6.5 Hz, H-1¢), 6.87 (d, 2 H, J = 8.3 Hz,
ArH-15/19), 7.32 (s, 1 H, H-9), 7.56 (d, 2 H, J = 8.3 Hz, Ar-H-16/
18), 7.87 (s, 1 H, H-2).
13C NMR (100.6 MHz, CDCl3): d = –5.5 (2 s, SiCH3), –4.8 (2 s,
SiCH3), 10.3 (8-CH3), 17.9 (SiC, quaternary), 18.4 (SiC, quaterna-
ry), 25.9 (2 s, Si-t-Bu), 41.1 (C-2¢), 45.3 (C-13), 62.9 (C-5¢), 71.9
(C-3¢), 83.6 (C-1¢), 87.6 (C-4¢), 93.6 (C-17), 104.0 (C-9), 116.9 (C-
12), 126.2 (C-8), 128.9 (C-15/19), 135.4 (C-14), 136.4 (C-2), 138.0
(C-16/18), 145.7 (C-6), 149.3 (C-4), 151.7 (C-11).
MS-ESI: m/z = 348.9 [M – H]+.
Anal. Calcd for C15H20N6O3: C, 54.21; H, 6.07; N, 25.29. Found: C,
54.40; H, 6.31; N, 25.18.
3¢,5¢-O-Di-tert-butyldimethylsilyl-2¢-deoxyguanosine (4)
The reaction was carried out in a dry flask under an argon atmo-
sphere. 2¢-Deoxyguanosine (5 g, 18.7 mmol) was suspended in an-
hyd DMF (23 mL). A TBS-solution (1 mol/L solution in THF; 75
mL, 4 equiv) and imidazole (8.9 g, 131 mmol, 7 equiv) was added
to the suspension. After 10 min the solution began to clear and the
product began to crystallize. The suspension was stirred overnight,
EtOH (30 mL) was added, and after stirring for 30 min the suspen-
sion was concentrated under reduced pressure. The crystals were
filtered off under vacuum and washed with cold EtOH. The residue
was dried under vacuum overnight and gave 8.36 g (90%) of 4.
MS-ESI: m/z = 750.3 [M – H]+.
Anal.Calcd for C32H48IN5O4Si2: C, 51.20; H, 6.41; N, 9.04. Found:
C, 51.18; H, 6.34; N, 8.77.
1H NMR (250 MHz, DMSO-d6): d = –0.06 (s, 6 H, SiCH3), 0.00 (s,
6 H, SiCH3), 0.77 (6 s, 18 H, Si-t-Bu), 2.05–2.20 (m, 1 H, H-2¢),
2.50–2.65 (m, 1 H, H-2¢), 3.50–3.62 (m, 2 H, H-5¢), 3.69–3.77 (m,
1 H, H-4¢), 4.38–4.40 (m, 1 H, H-3¢), 5.98–6.01 (t, 1 H, J = 6.0 Hz,
H-1¢), 6.43 (s, 2 H, NH2), 7.8 (s, 1 H, H-8), 10.57 (s, 1 H, NH).
13C NMR (62.8 MHz, DMSO-d6): d = –5.78 (2 s, SiCH3), –5.2 (2 s,
SiCH3), 17.3 (SiC, quaternary), 17.6 (s, SiC, quaternary), 25.4 (Si-
t-Bu), 39.2 (C-2¢), 62.6 (C-5¢), 71.9 (C-3¢), 82.1 (C-1¢), 86.8 (C-4¢),
116.6 (C-5), 134.5 (C-8), 150.7 (C-4), 153.5 (C-2), 156.3 (C-6).
3¢,5¢-O-Di-tert-butyldimethylsilyl-2-N-(p-iodobenzyl)-2¢-deoxy-
guanosine (7)
To a solution of 6 (1.53 g; 2.04 mmol) in THF (50 mL), H2O (20
mL) and NBS (0.45 g; 2.45 mmol) were added. After 40 min the re-
action was stopped by the addition of an aq solution of NH4OH
(32%; 10 mL). After stirring for 30 min the two phases were sepa-
rated and the aqueous phase was extracted with CH2Cl2 (2 × 100
mL). The combined organic phases were dried with Na2SO4, fil-
tered, and evaporated. Column chromatography (CH2Cl2–i-PrOH,
30:1) of the residue gave 1.06 g (73%) of 7.
1H NMR (250 MHz, CDCl3): d = –0.03 (s, 6 H, SiCH3), 0.00 (s, 6
H, SiCH3), 0.77 (2 s, 18 H, Si-t-Bu), 2.15–2.20 (m, 1 H, H-2¢), 2.21–
2.35 (m, 1 H, H-2¢), 3.64–3.66 (m, 2 H, H-5¢), 3.88–3.89 (m, 1 H,
H-4¢), 4.38–4.39 (m, 1 H, H-3¢), 4.46 (s, 2 H, N2-CH2), 6.07 (t, 1 H,
H-1¢), 7.03 (d, 2 H, J = 8.3 Hz, o-ArH), 7.39 (s, 1 H, H-8), 7.47 (d,
2 H, J = 8.3 Hz, m-Ar-H), 8.1 (s, 1 H, N2-H), 12.05 (s, 1 H, N1-H).
13C NMR (100.6 MHz, CDCl3): d = –5.5 (2 s, SiCH3), –4.8 (2 s,
SiCH3), 18.3 (SiC, quaternary), 18.4 (SiC, quaternary), 25.8 (s, Si-
t-Bu), 40.6 (C-2¢), 44.3 (C-10), 62.9 (C-5¢), 72.3 (C-3¢), 84.1 (C-1¢),
87.7 (C-4¢), 91.9 (C-14), 117.2 (C-5), 128.6 (C-12/16), 135.3 (C-8),
137.2 (C-13/15), 139.3 (C-2), 150.9 (C-4), 152.6 (C-11), 159.1 (C-
9).
MS-ESI: m/z = 496.4 [M – H]+
HRMS (ESI): m/z calcd for C30H41N5O4Si2 [M – H]+: 496.27698;
found: 496.27763.
3¢,5¢-O-Di-tert-butyldimethylsilyl-2¢-deoxy-4-desmethyl-
wyosine (5)
The reaction was carried out in a dry flask under an argon atmo-
sphere. By using a water bath (60 °C) 4 (4 g, 8.1 mmol) were dis-
solved in anhyd DMSO (80 mL). Subsequently NaH (95%; 224 mg;
8.9 mmol, 1.1 equiv) was added, which was accompanied by a ve-
hement reaction; the resulting solution was stirred for 1 h. Then bro-
moacetone (1.1 g, 8.1 mmol) was added dropwise, whereby the
solution changed color. The red solution was stirred overnight at r.t.
protected from light. The solvent was removed under reduced pres-
sure and column chromatography (CH2Cl2–MeOH, 40:1 → 20:1) of
the residue gave 3.7 g (85%) of 5.
1H NMR (250 MHz, DMSO-d6): d = –0.08 (s, 6 H, SiCH3), 0.00 (s,
6 H, Si-CH3), 0.75 (4 s, 18 H, Si-t-Bu), 2.14 (s, 3 H, 8-CH3), 2.15–
2.22 (m, 1 H, H-2¢), 2.55¢2.8 (m, 1 H, H-2¢), 3.50–3.65 (m, 2 H, H-
5¢), 3.70–3.80 (m, 1 H, H-4¢), 4.41–4.44 (m, 1 H, H-3¢), 6.11–6.17
(t, 1 H, J = 6.5 Hz, H-1¢), 7.24 (s, 1 H, H-9), 7.96 (s, 1 H, H-2), 12.20
(s, 1 H, NH).
13C NMR (100.6 MHz, DMSO-d6): d = –5.4 (2 s, SiCH3), –4.9 (2 s,
SiCH3), 10.5 (8-CH3), 17.7 (s, SiC, quaternary), 17.9 (s, SiC, qua-
ternary), 25.7 (Si-t-Bu), 39.7 (C-2¢), 62.7 (C-5¢), 71.9 (C-3¢), 82.4
(C-1¢), 86.9 (C-4¢), 103.3 (C-9), 115.5 (C-12), 125.9 (C-8), 136.4
(C-2), 145.6 (C-6), 149.6 (C-4), 151.1 (C-11).
MS-ESI: m/z = 534.3 [M – H]+
HRMS (ESI): m/z calcd for C32H42N5O4Si2 [M – H]+: 534.292634;
MS-ESI: m/z = 712.5 [M – H]+.
HRMS (ESI): m/z calcd for C36H45IN5O2 [M – H]+: 712.220578;
found: 712.22148
2-N-(p-Iodobenzyl)-2¢deoxyguanosine (8)
The reaction was carried out in a dry flask and under an argon atmo-
sphere. To a solution of 7 (1.05 g, 1.5 mmol) in anhyd THF (20 mL),
TBAF (1 M in THF; 3.1 mL, 3.1 mmol, 2.1 equiv) was added drop-
wise. After 20 min the reaction was complete. The solution was
evaporated and column chromatography (CH2Cl2–i-PrOH, 15:1) of
the residue gave 503 mg (71%) of 8.
1H NMR (250 MHz, DMSO-d6): d = 2.15–2.20 (m, 1 H, H-2¢),
2.50–2.65 (m, 1 H, H-2¢), 3.45–3.55 (m, 1 H, H-5¢), 3.75–3.85 (m,
1 H, H-5¢), 4,3 (s, 1 H, 5¢-OH), 4.44 (d, 2 H, J = 5.8 Hz, 10-CH2),
4.85 (s, 1 H, 3¢-OH), 5.26–5.27 (m, 1 H, H-4¢), 6.08–6.14 (m, 1 H,
found: 534.29285.
Synthesis 2005, No. 11, 1797–1800 © Thieme Stuttgart · New York