1328
S. Raeppel et al. / Bioorg. Med. Chem. Lett. 19 (2009) 1323–1328
Armand, J.-P.; Scigalla, P.; Raymond, E. J. Clin. Oncol. 2006, 24, 25; (d) Faivre, S.;
Compound 29, the lead molecule, shows an excellent in vitro
Demetri, G.; Sargent, W.; Raymond, E. Nat. Rev. Drug Discov. 2007, 6, 734.
8. (a) Christensen, J. G.; Schreck, R.; Burrows, J.; Kuruganti, P.; Chan, E.; Le, P.;
Chen, J.; Wang, X.; Ruslim, L.; Blake, R.; Lipson, K. E.; Ramphal, J.; Do, S.; Cui, J.
J.; Cherrington, J. M.; Mendel, D. B. Cancer Res. 2003, 63, 7345; (b) Ma, P. C.;
Schaefer, E.; Christensen, J. G.; Salgia, R. Clin. Cancer Res. 2005, 11, 2312; (c)
Smolen, G. A.; Sordella, R.; Muir, B.; Mohapatra, G.; Barmettler, A.; Archibald,
H.; Kim, W. J.; Okimoto, R. A.; Bell, D. W.; Sgroi, D. C.; Christensen, J. G.;
Settleman, J.; Haber, D. A. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 2316.
9. WO 2003/000660 A1.
profile and favorable pharmacokinetic characteristics and exhibits
significant in vivo efficacy in the MKN-45 human xenograft mouse
model. Efforts to further optimize pharmacokinetic characteristics
and physicochemical properties of N-(3-fluoro-4-(2-arylthie-
no[3,2-b]pyridin-7-yloxy)phenyl)-2-oxo-3-phenylimidazolidine-
1-carboxamides as well as attempts to expand this series of com-
pounds towards chemical entities with a different kinase inhibi-
tory profile is in progress.
10. WO 2005/030140 A2.
11. (a) WO 2006/010264 A1.; (b) US 2006/0287343 A1.; (c) US 2007/0004675 A1.;
(d) Claridge, S.; Raeppel, F.; Granger, M.-C.; Bernstein, N.; Saavedra, O.; Zhan, L.;
Llewellyn, D.; Wahhab, A.; Deziel, R.; Rahil, J.; Beaulieu, N.; Nguyen, H.;
Dupont, I.; Barsalou, A.; Beaulieu, C.; Chute, I.; Gravel, S.; Robert, M.-F.;
Lefebvre, S.; Dubay, M.; Pascal, R.; Gillespie, J.; Jin, Z.; Wang, J.; Besterman, J.;
Macleod, A. R.; Vaisburg, A. Bioorg. Med. Chem. Lett. 2008, 18, 2793.
12. The details for the synthesis and the characterization of all the new compounds
are described in US 2007/0004675 A1 and WO 2007/107005 A1.
13. The present work was first presented (poster session) at the International
Conference on Medicinal Chemistry. Drug Discovery and Selection. 43èmes
Rencontres internationales de Chimie Thérapeutique. July 4–6, 2007, Faculté
de Pharmacie, Lille, France.
14. In Vitro Kinase Assays (c-Met and VEGFR-2/KDR): Preparation of GST fusion
proteins: recombinant baculovirus containing the catalytic domain of c-Met
and of the VEGFR-2/KDR receptor fused to glutathione S-transferase (GST)
fusion genes were used to infect High five (c-Met) or Sf9 (VEGFR-2/KDR) cells
at a multiplicity of infection of 1 or 0.1, respectively. Cell lysates were prepared
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after ꢀ72 h of infection in 1% Triton X-100, 2
lg of leupeptin/mL, and 2 lg of
aprotinin/mL after ꢀ72 h of infection in phosphate-buffered saline, and the
fusion proteins were purified over glutathione agarose (Sigma) according to
the manufacturer’s instructions. Biochemical kinase assays for IC50
determination and kinetic studies: Inhibition of c-Met and VEGFR-2/KDR was
measured in a DELFIATM assay (Perkin Elmer). The substrate poly(Glu4,Tyr) was
immobilized onto black high-binding polystyrene 96-well plates (Nunc
Maxisorp). The c-Met kinase reaction was conducted in 25 mM Hepes pH 7.5
containing 20 mM NaCl, 10 mM MgCl2, 5 mM b-Mercaptoethanol, 0.1 mg/mL
bovine serum albumin (BSA) and 20 lM vanadate, while the VEGFR-2/KDR
reaction was conducted in 60 mM Hepes pH 7.5 containing 3 mM MgCl2, 3 mM
MnCl2, 1.2 mM b-Mercaptoethanol, 0.1 mg/mL BSA and 3 uM vanadate. ATP
concentrations in the assay were 10
lM for c-Met (5Â the Km) and 0.6 lM for
VEGFR-2/KDR (2Â the Km). Enzyme concentration was 25 nM (c-Met) or 5 nM
(VEGFR-2/KDR).The recombinant enzymes were pre-incubated with inhibitor
and Mg-ATP on ice in polypropylene 96-well plates for 4 min, and then
transferred to the substrate coated plates. The subsequent kinase reaction took
place at 30 °C for 30 min. (c-Met) or 10 min. (VEGFR-2/KDR). After incubation,
the kinase reactions were quenched with EDTA and the plates were washed.
Phosphorylated product was detected by incubation with Europium-labeled
anti-phosphotyrosine MoAb. After washing the plates, bound MoAb was
detected by time-resolved fluorescence in
a Gemini SpectraMax reader
(Molecular Devices). Inhibitors were tested at seven different concentrations
each in triplicate. IC50s were calculated in a four parameters equation curve
plotting inhibition (%).
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150 min and lysate samples from treatment wells were transferred to high
binding
white
polysterene
96-well
plates
(Corning).
TPR-Met
autophosphorylated levels were detected by ELISA using the primary
antibodies anti-phospho-Tyrosine (Millipore, 4G10) and a reporter antibody,
anti-mouse -horseradish peroxidase (Sigma). Plates were washed on a plate
washer (SkanWasher, Molecular Devises) and subsequently incubated with
chemiluminescent substrate solution (ECL, Roche). Luminescence signal was
captured on a Polar Star Optima apparatus (BMG LabTech). Average values of
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a 4-
parameter fit model. These curves were calculated using GraFit 5.0 software.
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