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D. Haldar et al. / Tetrahedron 63 (2007) 6322–6330
(50 mL). The mixture was stirred at room temperature for
30 min. The solvent was then evaporated; the residue was
dissolved in methanol (30 mL) and heated to reflux for
45 min. Excess triethylamine was added. After evaporation
of the solvent, the solid residue was purified by silica gel
chromatography using CH2Cl2/EtOAc 98:2 vol/vol to afford
compound 7 in 62% yield (1.1 g, 1.43 mmol) as a white
solid. Mp 107–109 ꢂC. 1H NMR (CDCl3, 400 MHz):
d 1.53 (s, 9H), 4.49 (br, 2H), 5.14 (s, 2H), 5.18 (s, 2H), 5.28
(s, 2H), 5.91 (s, 1H), 7.42 (m, 22H), 7.63 (s, 1H), 7.83 (s,
1H), 8.03 (s, 2H), 10.22 (s, 1H), 10.25 (s, 1H). 13C NMR
(CDCl3, 100 MHz): 28.2, 69.9, 70.7, 81.1, 90.5, 92.1, 95.1,
196.2, 112.1, 128.2, 127.6, 128.6, 134.7, 135.9, 150.3,
151.6, 152.2, 158.2, 161.5, 167.7, 168.4. IR (liquid layer):
nmax 3366, 3315, 3034, 2979, 2932, 1729, 1694, 1613,
1582, 1532, 1447, 1392, 1368, 1348, 1335, 1291, 1233,
1170, 1058, 1047, 1028. MS calcd (C43H41N7O7), 767.31;
found (TOFMS ES+), 768.1 [M+H]+ 790.1 [M+Na]+.
phase was evaporated and dried under vacuum. The product
contaminated with some starting diester 9 was used without
further purification. Mp 159–161 ꢂC. 1H NMR (CDCl3,
400 MHz): d 4.00 (s, 3H), 4.01 (s, 3H), 7.83 (s, 1H), 7.87
(s, 1H). 13C NMR (CDCl3, 100 MHz): 53.1, 56.3, 115.6,
148.2, 164.2, 168.6. MS calcd (C9H9NO5), 211.05; found
(TOFMS ES+), 212.1 [M+H]+.
4.1.8. 2-Amino-6-benzyloxycarbonylamino-4-methoxy-
pyridine 13. To a solution of 4-methoxy-2,6-diaminopyri-
dine 12 (1.5 g, 10.8 mmol)20 in anhydrous THF (60 mL) at
ꢀ78 ꢂC, a 2 M solution of n-butyllithium in hexane (2.7 mL,
1 equiv) was added slowly. After 15 min, benzyl chlorofor-
mate (0.88 mL, 1 equiv) was added at once. The mixture
was stirred at ꢀ78 ꢂC for 5 h, then at room temperature for
12 h. The reaction was quenched with a small amount of
water. The solvent was evaporated, and the residue was dis-
solved in CH2Cl2. This solution was washed with water, dried
over MgSO4, filtered, and evaporated. The residue was puri-
fied by silica gel chromatography using CH2Cl2/EtOAc 96:4
vol/vol to afford compound 13 in 51% yield (1.5 g,
4.1.5. Heptamer 8. Compound 8 was prepared from 4-
benzyloxy pyridine-dicarboxilic acid17 (76 mg, 0.28 mmol,
1 equiv) and trimer 7 (0.47 g, 0.62 mmol, 2.2 equiv) using
the general procedure for coupling described above. The
product was purified by silica gel chromatography using
CH2Cl2/EtOAc 98:2 vol/vol to afford compound 8 in 71%
yield (354 mg, 0.2 mmol) as a white solid. Mp 141–
1
5.5 mmol) as an off-white solid. Mp 91–93 ꢂC. H NMR
(CDCl3, 400 MHz): d 1.57 (s, 3H), 3.79 (s, 3H), 4.21 (s, 2H),
5.19 (s, 2H), 5.71 (s, 1H), 6.99 (s, 1H), 7.37 (s, 3H). 13C NMR
(CDCl3, 100 MHz): 55.2, 66.9, 88.8, 89.3, 128.2, 128.5,
135.8, 151.6, 153.0, 158.5, 169.1. MS calcd (C14H15N3O3),
273.11; found (TOFMS ES+), 274.1 [M+H]+.
1
143 ꢂC. H NMR (DMSO-d6, 1 mM, single helix, 75 ꢂC,
400 MHz): d 1.32 (s, 18H), 5.12 (s, 4H), 5.21 (s, 4H), 5.38
(s, 4H), 5.50 (s, 2H), 7.10 (s 2H), 7.42 (br, 37H), 7.85 (s,
2H), 7.89 (s, 2H), 8.05 (s, 2H), 8.81 (s, 2H), 10.13 (s, 2H),
10.34 (s, 2H), 10.74 (s, 2H). 13C NMR (CDCl3, 100 MHz):
30.1, 67.9, 70.4, 81.3, 94.2, 97.0, 114.1, 128.9, 129.8,
133.5, 135.1, 141.0, 152.1, 152.6, 161.9, 172.3. IR (liquid
layer) nmax: 3312, 3033, 2923, 2852, 1733, 1699, 1609,
1580, 1511, 1435, 1377, 1220, 1169, 1123, 1058, 1046.
MS calcd (C100H89N15O17), 1771.65; found (TOFMS
ES+), 1772.17 [M+H]+.
4.1.9. Dimer ester 14. A solution of acid 11 (1 g, 4.74 mmol)
in thionyl chloride (5 mL) was heated to reflux for 30 min.
Excess thionyl chloride was distilled under reduced pressure,
and azeotroped with dry toluene. The residue was dissolved
in dry toluene (10 mL). To this solution at 0 ꢂC, a solution
of amine 13 (1.16 g, 4.27 mmol, 0.9 equiv) in dry toluene
(10 mL) was added, followed by distilled N,N-diisopropyl-
ethylamine (4 mL, 23.7 mmol, 5 equiv). The mixture was al-
lowed to warm to ambient temperature and stirred overnight.
The solvent was removed and the residue was purified by sil-
ica gel chromatography using CH2Cl2/EtOAc 96:4 vol/vol to
afford dimer 14 in 75% yield (1.65 g, 3.55 mmol) as a white
solid. Mp 171–173 ꢂC. 1H NMR (CDCl3, 400 MHz): d 1.55
(s, 3H), 3.91 (s, 3H), 3.99 (s, 3H), 4.02 (s, 3H), 5.22 (s,
2H), 7.40 (m, 5H), 7.71 (s, 1H), 7.77 (s, 1H), 7.93 (s, 1H),
10.20 (s, 1H). 13C NMR (CDCl3, 100 MHz): 53.0, 55.6,
56.1, 67.1, 94.4, 95.5, 110.6, 114.5, 128.1, 128. 6, 135.7,
150.2, 151.1, 152.8, 161.6, 168.1, 169.5. HRMS calcd for
C23H23N4O7: 467.1567; found (ESI), 467.1548 [M+H]+.
4.1.6. Heptamer 2. Diprotected heptamer 8 (250 mg,
0.14 mmol) was dissolved in CH2Cl2 (5 mL) and TFA
(2 mL) was added. After 2 h, the reaction mixture was
washed with saturated NaHCO3 solution and extracted with
chloroform (2ꢁ50 mL). The solvent was evaporated to
afford compound 2 in 99% yield (204 mg, 0.13 mmol) as
a white solid. Mp 278–280 ꢂC. 1H NMR (DMSO-d6,
2 mM, 65 ꢂC, single helix, 400 MHz): d 5.01 (s, 4H), 5.24
(s, 4H), 5.32 (s, 8H), 5.44 (s, 4H), 5.77 (s, 2H), 6.96 (s,
2H), 7.41 (br, 35H), 7.69 (s, 2H), 7.72 (s, 2H), 7.76 (s, 2H),
7.79 (s, 2H), 7.92 (s, 2H), 10.13 (s, 2H), 10.55 (s, 2H),
11.02 (s, 2H). 13C NMR (CDCl3, 100 MHz): 69.4, 70.4,
89.7, 91.7, 97.1, 111.2, 127.3, 127.5, 128.4, 128.5, 134.7,
135.5, 150.1, 150.4, 157.6, 161.4, 167.3. HRMS calcd for
C90H74N15O13: 1572.5591; found (ESI), 1572.5575 [M+H]+.
4.1.10. Dimer acid 15. Compound 15 was prepared from es-
ter 14 (1.5 g, 3.2 mmol) and NaOH (5 equiv) using a proce-
dure comparable to that of the preparation of 11. The product
was used without further purification (1.4 g, 3.1 mmol,
1
99%). Mp 245–247 ꢂC. H NMR (DMSO-d6, 400 MHz):
d 3.86 (s, 3H), 4.01 (s, 3H), 5.18 (s, 2H), 7.30 (s, 1H), 7.41
(m, 5H), 7.59 (s, 1H), 7.77 (s, 1H), 7.86 (s, 1H), 10.37 (s,
1H), 10.44 (s, 1H). 13C NMR (CDCl3, 100 MHz): 55.4,
56.3, 65.7, 66.9, 94.2, 94.8, 110.7, 113.5, 127.7, 127.3,
150.0, 152.2, 153.3, 165.0, 168.0, 168.4. MS calcd
(C22H20N4O7), 452.13; found (TOFMS ES+), 453.1
[M+H]+, 475.1 [M+Na]+.
4.1.7. 4-Methoxy-2,6-pyridine-dicarboxylic acid mono-
methyl ester 11. Dimethyl 4-methoxypyridine 2,6-dicarb-
oxylate 9 (2 g, 8.89 mmol)20 was dissolved in 1,4-dioxane
(32 mL) and methanol (8 mL) and the solution was cooled
to 0 ꢂC. Sodium hydroxide (355 mg, 8.89 mmol, 1 equiv)
was added and the mixture was stirred at 0 ꢂC for 2 h and an-
other 2 h at ambient temperature. The solution was neutral-
ized with acetic acid and poured into water (50 mL). The
product was extracted with CH2Cl2 (2ꢁ50 mL). The organic
4.1.11. Trimer 16. Compound 16 was prepared from amine
13 (0.4 g, 1.46 mmol, 1 equiv) and 4-methoxypyridine-2,6-