S. Hikishima et al. / Bioorg. Med. Chem. Lett. 17 (2007) 4173–4177
4177
C.; Montgomery, J. A.; Secrist, J. A., III Proc. Natl. Acad.
Sci. U.S.A. 1991, 88, 11540; (c) Elliott, R. D.; Niwes, S.;
Riordan, J. M.; Montgomery, J. A.; Sercrist, J. A.
Neucleoside Nucelotides 1992, 11, 97; (d) Kelly, J. L.;
McLean, E. W.; Crouch, R. C.; Averett, D. R.; Tuttle, J.
V. J. Med. Chem. 1995, 38, 1005.
3.66 (2H, td, JHF = 19.9 Hz, JHP = 7.2 Hz), 3.32, 3.09 (6H,
each s), 1.04 (6H, t, J = 8.6 Hz), 0.72 (9H, s); 31P NMR
(162 MHz, DMSO-d6) d 6.89 (1P, t, JPF = 101.5 Hz); 19F
NMR (376 MHz, DMSO-d6)
d
ꢀ47.28 (2F, dt,
JFP = 101.5 Hz, JFH = 19.9 Hz), ESI-MS m/z 729.1926
(calcd for C29H35F2N6O10PS: 729.1919). Compound 11b:
mp 192–194 °C; 1H NMR (400 MHz, DMSO-d6) d 8.59
(1H, s), 8.34 (1H, dd, J = 7.9, 1.4 Hz), 8.98 (1H, dd,
J = 7.9, 1.3 Hz), 8.01–7.92 (3H, m), 6.02 (2H, s), 4.23 (4H,
dq, JHH = JHP = 7.1 Hz), 3.18, 2.99 (6H, each s), 2.74 (2H,
t, J = 7.6 Hz), 2.40 (2H, m), 1.30 (6H, t, J = 7.1 Hz), 1.02
(9H, s); 31P NMR (162 MHz, DMSO-d6) d 7.44 (1P, t,
3. Halazy, S.; Ehrhard, A.; Danzin, C. J. Am. Chem. Soc.
1991, 113, 315.
4. (a) Yokomatsu, T.; Abe, H.; Sato, M.; Suemune, K.;
Kihara, T.; Soeda, S.; Shimeno, H.; Shibuya, S. Bioorg.
Med. Chem. 1998, 6, 2495; (b) Yokomatsu, T.; Hayakawa,
Y.; Suemune, K.; Kihara, T.; Soeda, S.; Shimeno, H.;
Shibuya, S. Bioorg. Med. Chem. Lett. 1999, 9, 2833; (c)
Yokomatsu, T.; Hayakawa, Y.; Kihara, T.; Koyanagi, S.;
Soeda, S.; Shimeno, H.; Shibuya, S. Bioorg. Med. Chem.
2000, 8, 2571; (d) Yokomatsu, T.; Yamagishi, T.; Sue-
mune, K.; Abe, H.; Kihara, T.; Soeda, S.; Shimeno, H.;
Shibuya, S. Tetrahedron 2000, 56, 7099; (e) Hikishima, S.;
Isobe, M.; Koyanagi, S.; Soeda, S.; Shimeno, H.; Shibuya,
S.; Yokomatsu, T. Bioorg. Med. Chem. 2006, 14, 1660.
5. Iwanow, M.; Magnowska, L.; Yokomatsu, T.; Shibuya,
S.; Bzowska, A. Nucleosides Nucleotides and Nucleic Acids
2003, 22, 1567.
JPF = 104.0 Hz); 19F NMR (376 MHz, DMSO-d6)
d
ꢀ50.74 (2F, dt, JFP = 104.0 Hz, JFH = 19.5 Hz); ESI-MS
m/z 743.2028 (calcd for C30H37F2N6O10PS: 743.2075).
Compound 11c: mp 115–121 °C; 1H NMR (400 MHz,
DMSO-d6) d 8.56 (1H, s), 8.32 (1H, dd, J = 7.9, 1.6 Hz),
8.10 (1H, dd, J = 7.7, 1.4 Hz), 8.00–7.91 (3H, m), 6.02
(2H, s), 4.19 (4H, dq, JHH = JHP = 7.2 Hz), 3.17, 2.99 (6H,
each s), 2.59 (2H, t, J = 6.8 Hz), 2.27 (2H, m), 1.80 (2H,
m), 1.27 (6H, t, J = 7.2 Hz), 1.02 (9H, s); 31P NMR
(162 MHz, DMSO-d6) d 7.90 (1P, t, JPF = 106.4 Hz); 19F
NMR (376 MHz, DMSO-d6)
d
ꢀ49.25 (2F, dt,
6. Luic, M.; Koellner, G.; Yokomatsu, T.; Shibuya, S.;
Bzowska, A. Acta Crystallogr. 2004, D60, 1417, PDB-
reference number for the PNP-DFPP-G complex: 1V48.
7. (a) Montgomery, J. A.; Niwas, S.; Rose, J. D.; Secrist, J. A.,
III; Babu, Y. S.; Bugg, C. E.; Erion, M. D.; Guida, W. C.;
Ealick, S. E. J. Med. Chem. 1993, 36, 55; (b) Erion, M. D.;
Niwas, S.; Rose, J. D.; Ananthan, S.; Allen, M.; Secrist, J.
A., III; Babu, Y. S.; Bugg, C. E.; Guida, W. C.; Ealick, S. E.;
Montgomery, J. A. J. Med. Chem. 1993, 36, 3771.
8. Kicska, G. A.; Tyler, P. C.; Evans, G. B.; Furneaux, R.
H.; Schramm, V. L.; Kim, K. J. Biol. Chem. 2002, 277,
3226.
9. Taylor, E. C.; Young, W. B. J. Org. Chem. 1995, 60, 7947.
10. Lwonard, P.; Wiglenda, T.; Seela, F. Nucleoside Nucleo-
tides Nucleic Acids 2001, 20, 1279.
11. For a review of Pd-mediated cross coupling reactions to
nuclosides: Agrofoglio, L. A.; Gillaizeau, I.; Saito, Y.
Chem. Rev. 2003, 103, 1875.
JFP = 106.4 Hz,JFH = 20.4 Hz); ESI-MS m/z 757.2220
(calcd for C31H39F2N6O10PS: 757.2232). nor-DFPP-DG:
mp >300 °C; 1H NMR (400 MHz, D2O, NaOD) d 7.17
(1H, s), 2.65 (2H, t, J = 7.2 Hz), 2.10 (2H, m), 1.87 (2H,
m); 31P NMR (162 MHz, D2O, NaOD) d 7.24 (1P, t,
JPF = 87.7 Hz); 19F NMR (376 MHz, D2O, NaOD)
ꢀ47.80 (2F, dt, JFP = 87.7 Hz, JFH = 21.4 Hz). ESI-MS
m/z 323.0717 (calcd for C10H13F2N4O4P: 323.0720); UV
0.1 N HCl 229 (23,000), 274 (13,600), pH 7.0 Hepes buffer
230 (23,100), 273 (10,500), 0.1 N NaOH 230 (24,600) 265
(7100), 287 (6200). DFPP-DG: mp >287 °C; 1H NMR
(400 MHz, D2O, NaOD) d 7.15 (1H, s), 2.62 (2H, t,
J = 7.0 Hz), 2.01 (2H, m), 1.69–1.62 (4H, m); 31P NMR
(162 MHz, D2O, NaOD) d 7.33 (1P, t, JPF = 87.7 Hz); 19
NMR (376 MHz, D2O, NaOD)
ꢀ47.96 (2F, dt,
F
d
JFP = 87.7 Hz, JFH = 21.4 Hz); ESI-MS m/z 337.0856
(calcd for C11H15F2N4O4P: 337.0877); UV 0.1 N HCl
230 (17,000), 274 (12,700), pH 7.0 Hepes buffer 231
(17,500), 273 (10,100), 0.1 N NaOH 231 (18,400), 267
(6800), 285 (6100); pKa1 = 5.1, pKa2 = 10.6 (from spectro-
photometric titrations). homo-DFPP-DG: mp >300 °C; 1H
NMR (400 MHz, D2O, NaOD) d 7.10 (1H, s), 2.56 (2H, t,
J = 7.4 Hz), 1.98 (2H, m), 1.64–1.55 (4H, m), 1.40 (2H, m);
31P NMR (162 MHz, D2O, NaOD) d 7.35 (1P, t,
JPF = 88.0 Hz); 19F NMR (376 MHz, D2O, NaOD) d
ꢀ47.80 (2F, dt, JFP = 88.0 Hz, JFH = 21.4 Hz). ESI-MS m/
z 351.1047 (calcd for C12H17F2N4O4P: 351.1033); UV, due
to poor solubility extinction coefficients for this analogue
were not determined; for calculation of the inhibitor
concentration, extinction coefficients obtained for DFPP-
DG were used.
12. Yokomatsu, T.; Ichimura, A.; Kato, J.; Shibuya, S.
Synlett 2001, 287.
13. For a review of fluorinated phosphonates: Romanenko,
V.; Kukhar, V. P. Chem. Rev. 2006, 106, 3868.
14. AcOH was necessary to induce a good yield; large
amounts of enyne products were produced in the absence
of AcOH.
15. (a) Berkowitzt, D. B.; Eggen, M.-J.; Shen, Q.; Sloss, D. G.
J. Org. Chem. 1993, 58, 6174; (b) Shen, Q.; Sloss, D. G.;
Berkowitz, D. B. Synth. Commun. 1994, 24, 1519, Berko-
witzt reported coupling reactions of LiCF2PO3Et2 with
triflates proceeded well in THF in the presence of HMPA.
However, yields of 7b and 7c were found to decrease upon
using HMPA as a co-solvent.
16. Zhang, H.; Larock, R. C. J. Org. Chem. 2002, 67, 7048.
17. All new compounds gave satisfactory spectroscopic and
analytical data. Compound 11a: mp 132–137 °C; 1H NMR
(400 MHz, DMSO-d6) d 9.86 (1H, s), 9.34 (1H, dd,
J = 9.6, 1.7 Hz). 9.29 (1H, dd, J = 9.4, 1.1 Hz), 9.18–9.07
(3H, m), 6.76 (2H, s), 4.61 (4H, dq, JHH = JHP = 8.6 Hz),
18. (a) Bzowska, A. Biochim. Biophys. Acta 2002, 1596, 293;
(b) Wierzchowski, J.; Bzowska, A.; Ste˛pniak, K.; Shugar,
D. Z. Naturforsch. 2004, 59c, 713; (c) Wielgus-Kutrowska,
B.; Bzowska, A. Biochim. Biophys. Acta 2006, 1764, 887.
ˇ
19. Glavas-Obrovac, L.; Suver, M.; Hikishima, S.; Yokoma-
tsu, T.; Bzowska, A. Nucleosides Nucleotides and Nucleic
Acids (in press).